RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 LRRC7Q96NW7 1537 aa16.14■□□□□ 0.18
SMPD4-208ENST00000439029 GPATCH8Q9UKJ3 1502 aaKnown RBP16.14■□□□□ 0.18
SMPD4-208ENST00000439029 INO80Q9ULG1 1556 aaPredicted RBP16.14■□□□□ 0.17
SMPD4-208ENST00000439029 STRCP1A6NGW2 1772 aa16.13■□□□□ 0.17
SMPD4-208ENST00000439029 CFDP1Q9UEE9 299 aaPredicted RBP16.13■□□□□ 0.17
SMPD4-208ENST00000439029 THEMISQ8N1K5 641 aaPredicted RBP16.12■□□□□ 0.17
SMPD4-208ENST00000439029 CCDC18Q5T9S5 1454 aa16.1■□□□□ 0.17
SMPD4-208ENST00000439029 ZNF644Q9H582 1327 aaPredicted RBP16.1■□□□□ 0.17
SMPD4-208ENST00000439029 SETD1AO15047 1707 aaKnown RBP16.09■□□□□ 0.17
SMPD4-208ENST00000439029 KIF3BO15066 747 aa16.09■□□□□ 0.17
SMPD4-208ENST00000439029 CHIC1Q5VXU3 224 aa16.09■□□□□ 0.17
SMPD4-208ENST00000439029 CASKIN1Q8WXD9 1431 aa16.09■□□□□ 0.17
SMPD4-208ENST00000439029 RNF17Q9BXT8 1623 aaKnown RBP16.08■□□□□ 0.17
SMPD4-208ENST00000439029 KIAA1107Q9UPP5 1409 aa16.08■□□□□ 0.16
SMPD4-208ENST00000439029 MED14O60244 1454 aa16.08■□□□□ 0.16
SMPD4-208ENST00000439029 WASHC2CQ9Y4E1 1318 aa16.07■□□□□ 0.16
SMPD4-208ENST00000439029 PZPP20742 1482 aa16.07■□□□□ 0.16
SMPD4-208ENST00000439029 UGGT1Q9NYU2 1555 aa16.07■□□□□ 0.16
SMPD4-208ENST00000439029 IQGAP1P46940 1657 aa16.07■□□□□ 0.16
SMPD4-208ENST00000439029 ADGBQ8N7X0 1667 aa16.07■□□□□ 0.16
SMPD4-208ENST00000439029 FAM135AQ9P2D6 1515 aa16.06■□□□□ 0.16
SMPD4-208ENST00000439029 MIA2Q96PC5 1412 aa16.06■□□□□ 0.16
SMPD4-208ENST00000439029 PLEKHH2Q8IVE3 1493 aa16.05■□□□□ 0.16
SMPD4-208ENST00000439029 CCNB3Q8WWL7 1395 aa16.05■□□□□ 0.16
SMPD4-208ENST00000439029 DHX29Q7Z478 1369 aaKnown RBP16.04■□□□□ 0.16
SMPD4-208ENST00000439029 DEPDC5O75140 1603 aa16.04■□□□□ 0.16
SMPD4-208ENST00000439029 KDM5DQ9BY66 1539 aa16.02■□□□□ 0.15
SMPD4-208ENST00000439029 NLRP1Q9C000 1473 aa16.02■□□□□ 0.15
SMPD4-208ENST00000439029 SYNMO15061 1565 aa16.01■□□□□ 0.15
SMPD4-208ENST00000439029 RBM33Q96EV2 1170 aaKnown RBP15.98■□□□□ 0.15
SMPD4-208ENST00000439029 MBD5Q9P267 1494 aa15.97■□□□□ 0.15
SMPD4-208ENST00000439029 XIRP1Q702N8 1843 aaKnown RBP15.96■□□□□ 0.15
SMPD4-208ENST00000439029 UPF1Q92900 1129 aaKnown RBP eCLIP15.96■□□□□ 0.15
SMPD4-208ENST00000439029 FYCO1Q9BQS8 1478 aa15.96■□□□□ 0.14
SMPD4-208ENST00000439029 ZC3H13Q5T200 1668 aaKnown RBP15.95■□□□□ 0.14
SMPD4-208ENST00000439029 RTEL1-TNFRSF6BF6WH68 1400 aa15.95■□□□□ 0.14
SMPD4-208ENST00000439029 FAM135BQ49AJ0 1406 aa15.95■□□□□ 0.14
SMPD4-208ENST00000439029 LTKP29376 864 aa15.95■□□□□ 0.14
SMPD4-208ENST00000439029 TRIM52Q96A61 297 aa15.95■□□□□ 0.14
SMPD4-208ENST00000439029 TXNDC2Q86VQ3 553 aa15.94■□□□□ 0.14
SMPD4-208ENST00000439029 MTUS2Q5JR59 1369 aa15.93■□□□□ 0.14
SMPD4-208ENST00000439029 SCAF11Q99590 1463 aaKnown RBP15.92■□□□□ 0.14
SMPD4-208ENST00000439029 CFAP65Q6ZU64 1925 aaKnown RBP15.92■□□□□ 0.14
SMPD4-208ENST00000439029 TMEM94Q12767 1356 aa15.91■□□□□ 0.14
SMPD4-208ENST00000439029 ROBO1Q9Y6N7 1651 aa15.9■□□□□ 0.14
SMPD4-208ENST00000439029 TIAM1Q13009 1591 aa15.9■□□□□ 0.14
SMPD4-208ENST00000439029 ERVK-7P63135 1459 aa15.89■□□□□ 0.13
SMPD4-208ENST00000439029 NCOA2Q15596 1464 aa15.88■□□□□ 0.13
SMPD4-208ENST00000439029 CCDC141Q6ZP82 1450 aa15.87■□□□□ 0.13
SMPD4-208ENST00000439029 PROSER2Q86WR7 435 aaPredicted RBP15.87■□□□□ 0.13
SMPD4-208ENST00000439029 UBR1Q8IWV7 1749 aa15.87■□□□□ 0.13
SMPD4-208ENST00000439029 ABCC3O15438 1527 aa15.87■□□□□ 0.13
SMPD4-208ENST00000439029 MEX3CQ5U5Q3 659 aaKnown RBP15.85■□□□□ 0.13
SMPD4-208ENST00000439029 EID1Q9Y6B2 187 aa15.85■□□□□ 0.13
SMPD4-208ENST00000439029 SLC26A8Q96RN1 970 aa15.84■□□□□ 0.13
SMPD4-208ENST00000439029 JCADQ9P266 1359 aa15.84■□□□□ 0.13
SMPD4-208ENST00000439029 PHLPP1O60346 1717 aa15.82■□□□□ 0.12
SMPD4-208ENST00000439029 KCNA6P17658 529 aa15.82■□□□□ 0.12
SMPD4-208ENST00000439029 CAMSAP2Q08AD1 1489 aa15.82■□□□□ 0.12
SMPD4-208ENST00000439029 ARHGAP23Q9P227 1491 aa15.82■□□□□ 0.12
SMPD4-208ENST00000439029 MAP3K1Q13233 1512 aa15.82■□□□□ 0.12
SMPD4-208ENST00000439029 LRP6O75581 1613 aa15.81■□□□□ 0.12
SMPD4-208ENST00000439029 SLIT1O75093 1534 aa15.8■□□□□ 0.12
SMPD4-208ENST00000439029 TSPY4P0CV99 314 aa15.8■□□□□ 0.12
SMPD4-208ENST00000439029 TSPY10P0CW01 314 aa15.8■□□□□ 0.12
SMPD4-208ENST00000439029 SLAIN2Q9P270 581 aa15.8■□□□□ 0.12
SMPD4-208ENST00000439029 ZNF772Q68DY9 489 aaPredicted RBP15.79■□□□□ 0.12
SMPD4-208ENST00000439029 STAG3Q9UJ98 1225 aa15.79■□□□□ 0.12
SMPD4-208ENST00000439029 CEP152O94986 1710 aa15.79■□□□□ 0.12
SMPD4-208ENST00000439029 RXRBP28702 533 aa15.78■□□□□ 0.12
SMPD4-208ENST00000439029 RSPH4AQ5TD94 716 aa15.78■□□□□ 0.12
SMPD4-208ENST00000439029 LRRC9Q6ZRR7 1453 aa15.78■□□□□ 0.12
SMPD4-208ENST00000439029 EHBP1L1Q8N3D4 1523 aa15.77■□□□□ 0.11
SMPD4-208ENST00000439029 CEP162Q5TB80 1403 aa15.77■□□□□ 0.11
SMPD4-208ENST00000439029 MSH6P52701 1360 aa15.76■□□□□ 0.11
SMPD4-208ENST00000439029 TMEM2Q9UHN6 1383 aa15.76■□□□□ 0.11
SMPD4-208ENST00000439029 BCANQ96GW7 911 aa15.76■□□□□ 0.11
SMPD4-208ENST00000439029 NUTM2BA6NNL0 878 aaPredicted RBP15.75■□□□□ 0.11
SMPD4-208ENST00000439029 NUTM2EB1AL46 878 aaPredicted RBP15.75■□□□□ 0.11
SMPD4-208ENST00000439029 NUTM2AQ8IVF1 878 aaPredicted RBP15.75■□□□□ 0.11
SMPD4-208ENST00000439029 MROH1Q8NDA8 1641 aa15.75■□□□□ 0.11
SMPD4-208ENST00000439029 PIK3C2BO00750 1634 aa15.74■□□□□ 0.11
SMPD4-208ENST00000439029 PRDM15P57071 1507 aaPredicted RBP15.73■□□□□ 0.11
SMPD4-208ENST00000439029 COL16A1Q07092 1604 aaPredicted RBP15.73■□□□□ 0.11
SMPD4-208ENST00000439029 SPATA31A6Q5VVP1 1343 aa15.72■□□□□ 0.11
SMPD4-208ENST00000439029 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.72■□□□□ 0.118e-7■■□□□ 14.1
SMPD4-208ENST00000439029 ARHGEF5Q12774 1597 aa15.7■□□□□ 0.1
SMPD4-208ENST00000439029 IDI1Q13907 227 aa15.7■□□□□ 0.1
SMPD4-208ENST00000439029 C14orf37Q86TY3 774 aa15.69■□□□□ 0.1
SMPD4-208ENST00000439029 TET3O43151 1660 aa15.69■□□□□ 0.1
SMPD4-208ENST00000439029 SRCAPQ6ZRS2 3230 aa15.68■□□□□ 0.1
SMPD4-208ENST00000439029 NKTRP30414 1462 aaKnown RBP15.68■□□□□ 0.1
SMPD4-208ENST00000439029 EFCAB6Q5THR3 1501 aa15.68■□□□□ 0.1
SMPD4-208ENST00000439029 AFF2P51816 1311 aa15.68■□□□□ 0.1
SMPD4-208ENST00000439029 NUTM2DQ5VT03 806 aaPredicted RBP15.67■□□□□ 0.1
SMPD4-208ENST00000439029 EIF2AK4Q9P2K8 1649 aaKnown RBP15.67■□□□□ 0.1
SMPD4-208ENST00000439029 FGD6Q6ZV73 1430 aa15.67■□□□□ 0.1
SMPD4-208ENST00000439029 NWD1Q149M9 1564 aa15.66■□□□□ 0.1
SMPD4-208ENST00000439029 ARHGAP31Q2M1Z3 1444 aa15.65■□□□□ 0.1
SMPD4-208ENST00000439029 RGS12O14924 1447 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms