RNA–Protein interactions for RNA: ENST00000434453.1

LMBR1-209, Transcript of limb development membrane protein 1, human

TSL 5

Gene LMBR1, Length 2,229 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMBR1-209	ENST00000434453	ERICH6B	Q5W0A0	696 aa		34.01	■■■■□ 3.03
LMBR1-209	ENST00000434453	MYO5C	Q9NQX4	1742 aa		34.01	■■■■□ 3.03
LMBR1-209	ENST00000434453	ABCC2	Q92887	1545 aa		34	■■■■□ 3.03
LMBR1-209	ENST00000434453	ST20-MTHFS	A0A0A6YYL1	179 aa		34	■■■■□ 3.03
LMBR1-209	ENST00000434453	CNGB1	Q14028	1251 aa	Predicted RBP	33.99	■■■■□ 3.03
LMBR1-209	ENST00000434453	PLA2R1	Q13018	1463 aa		33.98	■■■■□ 3.03
LMBR1-209	ENST00000434453	TRPM1	Q7Z4N2	1603 aa		33.97	■■■■□ 3.03
LMBR1-209	ENST00000434453	PLXNC1	O60486	1568 aa		33.97	■■■■□ 3.03
LMBR1-209	ENST00000434453		E9PCH4	1651 aa		33.97	■■■■□ 3.03
LMBR1-209	ENST00000434453	PRAG1	Q86YV5	1406 aa		33.94	■■■■□ 3.02
LMBR1-209	ENST00000434453	CCDC144A	A2RUR9	1427 aa		33.93	■■■■□ 3.02
LMBR1-209	ENST00000434453	IQGAP3	Q86VI3	1631 aa		33.92	■■■■□ 3.02
LMBR1-209	ENST00000434453	PPP4R2	Q9NY27	417 aa		33.91	■■■■□ 3.02
LMBR1-209	ENST00000434453	PLEKHH2	Q8IVE3	1493 aa		33.89	■■■■□ 3.02
LMBR1-209	ENST00000434453	SMG6	Q86US8	1419 aa	Known RBP	33.88	■■■■□ 3.01
LMBR1-209	ENST00000434453	PNISR	Q8TF01	805 aa	Known RBP	33.87	■■■■□ 3.01
LMBR1-209	ENST00000434453	A2M	P01023	1474 aa		33.86	■■■■□ 3.01
LMBR1-209	ENST00000434453	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	33.83	■■■■□ 3.01	1e-8	■■■□□ 15.2
LMBR1-209	ENST00000434453	MAGI2	Q86UL8	1455 aa		33.83	■■■■□ 3.01
LMBR1-209	ENST00000434453	DUOX2	Q9NRD8	1548 aa		33.82	■■■■□ 3.01
LMBR1-209	ENST00000434453	ZCCHC11	Q5TAX3	1644 aa	Known RBP	33.82	■■■■□ 3
LMBR1-209	ENST00000434453	ANP32E	Q9BTT0	268 aa		33.81	■■■■□ 3
LMBR1-209	ENST00000434453	GPRASP1	Q5JY77	1395 aa		33.81	■■■■□ 3
LMBR1-209	ENST00000434453	RGL3	Q3MIN7	710 aa		33.8	■■■■□ 3
LMBR1-209	ENST00000434453	NBPF1	Q3BBV0	1214 aa		33.8	■■■■□ 3
LMBR1-209	ENST00000434453	PLCH2	O75038	1416 aa		33.78	■■■■□ 3
LMBR1-209	ENST00000434453	LAMC1	P11047	1609 aa		33.77	■■■■□ 3
LMBR1-209	ENST00000434453	TMC1	Q8TDI8	760 aa		33.77	■■■■□ 3
LMBR1-209	ENST00000434453	LRPPRC	P42704	1394 aa	Known RBP	33.76	■■■■□ 3
LMBR1-209	ENST00000434453	ATP10A	O60312	1499 aa		33.76	■■■■□ 3
LMBR1-209	ENST00000434453	KTN1	Q86UP2	1357 aa	Known RBP	33.76	■■■□□ 2.99
LMBR1-209	ENST00000434453	ERBIN	Q96RT1	1412 aa		33.75	■■■□□ 2.99
LMBR1-209	ENST00000434453	NUDC	Q9Y266	331 aa		33.75	■■■□□ 2.99
LMBR1-209	ENST00000434453	PRDM15	P57071	1507 aa	Predicted RBP	33.74	■■■□□ 2.99
LMBR1-209	ENST00000434453	CLASP1	Q7Z460	1538 aa		33.74	■■■□□ 2.99
LMBR1-209	ENST00000434453	BRD4	O60885	1362 aa	Predicted RBP	33.74	■■■□□ 2.99
LMBR1-209	ENST00000434453	MYBBP1A	Q9BQG0	1328 aa	Known RBP	33.74	■■■□□ 2.99
LMBR1-209	ENST00000434453	ABCC1	P33527	1531 aa		33.73	■■■□□ 2.99
LMBR1-209	ENST00000434453	RALBP1	Q15311	655 aa		33.72	■■■□□ 2.99
LMBR1-209	ENST00000434453	B4GALNT3	Q6L9W6	998 aa		33.72	■■■□□ 2.99
LMBR1-209	ENST00000434453	RNF123	Q5XPI4	1314 aa		33.71	■■■□□ 2.99
LMBR1-209	ENST00000434453	UHRF1BP1L	A0JNW5	1464 aa		33.71	■■■□□ 2.99
LMBR1-209	ENST00000434453	SENP3-EIF4A1	A0A087X0R7	540 aa		33.68	■■■□□ 2.98
LMBR1-209	ENST00000434453	TRAPPC8	Q9Y2L5	1435 aa		33.68	■■■□□ 2.98
LMBR1-209	ENST00000434453	COL17A1	Q9UMD9	1497 aa	Predicted RBP	33.67	■■■□□ 2.98
LMBR1-209	ENST00000434453	EIF2AK4	Q9P2K8	1649 aa	Known RBP	33.67	■■■□□ 2.98
LMBR1-209	ENST00000434453	EFCAB2	Q5VUJ9	269 aa		33.65	■■■□□ 2.98
LMBR1-209	ENST00000434453	TESK2	Q96S53	571 aa		33.65	■■■□□ 2.98
LMBR1-209	ENST00000434453	PARD3	Q8TEW0	1356 aa		33.65	■■■□□ 2.98
LMBR1-209	ENST00000434453	PER1	O15534	1290 aa	Predicted RBP	33.64	■■■□□ 2.98
LMBR1-209	ENST00000434453	DISP3	Q9P2K9	1392 aa		33.62	■■■□□ 2.97
LMBR1-209	ENST00000434453	RNF17	Q9BXT8	1623 aa	Known RBP	33.6	■■■□□ 2.97
LMBR1-209	ENST00000434453	MSH5	O43196	834 aa		33.58	■■■□□ 2.97
LMBR1-209	ENST00000434453	FANCI	Q9NVI1	1328 aa		33.56	■■■□□ 2.96
LMBR1-209	ENST00000434453	NLRP13	Q86W25	1043 aa		33.55	■■■□□ 2.96
LMBR1-209	ENST00000434453	ZFYVE16	Q7Z3T8	1539 aa		33.53	■■■□□ 2.96
LMBR1-209	ENST00000434453	ARAP3	Q8WWN8	1544 aa		33.52	■■■□□ 2.96
LMBR1-209	ENST00000434453	MADD	Q8WXG6	1647 aa		33.49	■■■□□ 2.95
LMBR1-209	ENST00000434453	RTEL1-TNFRSF6B	F6WH68	1400 aa		33.49	■■■□□ 2.95
LMBR1-209	ENST00000434453	AFAP1	Q8N556	730 aa		33.48	■■■□□ 2.95
LMBR1-209	ENST00000434453	SPAG9	O60271	1321 aa	Known RBP	33.48	■■■□□ 2.95
LMBR1-209	ENST00000434453	DEPDC5	O75140	1603 aa		33.47	■■■□□ 2.95
LMBR1-209	ENST00000434453	TRPM2	O94759	1503 aa		33.46	■■■□□ 2.95
LMBR1-209	ENST00000434453	WASHC2C	Q9Y4E1	1318 aa		33.46	■■■□□ 2.95
LMBR1-209	ENST00000434453	CEP152	O94986	1710 aa		33.45	■■■□□ 2.95
LMBR1-209	ENST00000434453	SPHKAP	Q2M3C7	1700 aa		33.45	■■■□□ 2.95
LMBR1-209	ENST00000434453	PANK3	Q9H999	370 aa		33.44	■■■□□ 2.94
LMBR1-209	ENST00000434453	IQGAP1	P46940	1657 aa		33.44	■■■□□ 2.94
LMBR1-209	ENST00000434453	TMF1	P82094	1093 aa		33.42	■■■□□ 2.94
LMBR1-209	ENST00000434453	PTPRT	O14522	1441 aa		33.41	■■■□□ 2.94
LMBR1-209	ENST00000434453	CLTCL1	P53675	1640 aa		33.41	■■■□□ 2.94
LMBR1-209	ENST00000434453	CC2D1B	Q5T0F9	858 aa	Known RBP	33.41	■■■□□ 2.94
LMBR1-209	ENST00000434453	ABCA9	Q8IUA7	1624 aa		33.39	■■■□□ 2.94
LMBR1-209	ENST00000434453	TET3	O43151	1660 aa		33.38	■■■□□ 2.93
LMBR1-209	ENST00000434453	INO80	Q9ULG1	1556 aa	Predicted RBP	33.38	■■■□□ 2.93
LMBR1-209	ENST00000434453	WDR7	Q9Y4E6	1490 aa		33.36	■■■□□ 2.93
LMBR1-209	ENST00000434453	VWDE	Q8N2E2	1590 aa		33.35	■■■□□ 2.93
LMBR1-209	ENST00000434453	ATP7A	Q04656	1500 aa		33.34	■■■□□ 2.93
LMBR1-209	ENST00000434453	CCDC136	Q96JN2	1154 aa		33.34	■■■□□ 2.93
LMBR1-209	ENST00000434453	FANCA	O15360	1455 aa		33.32	■■■□□ 2.92
LMBR1-209	ENST00000434453	BLM	P54132	1417 aa	Predicted RBP	33.32	■■■□□ 2.92
LMBR1-209	ENST00000434453	SALL2	Q9Y467	1007 aa	Predicted RBP	33.32	■■■□□ 2.92
LMBR1-209	ENST00000434453	ZMYM4	Q5VZL5	1548 aa		33.31	■■■□□ 2.92
LMBR1-209	ENST00000434453	INSR	P06213	1382 aa		33.31	■■■□□ 2.92
LMBR1-209	ENST00000434453	RRP1	P56182	461 aa	Known RBP	33.28	■■■□□ 2.92
LMBR1-209	ENST00000434453	PDE3B	Q13370	1112 aa		33.28	■■■□□ 2.92
LMBR1-209	ENST00000434453	SCAPER	Q9BY12	1400 aa		33.28	■■■□□ 2.92
LMBR1-209	ENST00000434453	RCAN3	Q9UKA8	241 aa		33.26	■■■□□ 2.91
LMBR1-209	ENST00000434453	MROH1	Q8NDA8	1641 aa		33.25	■■■□□ 2.91
LMBR1-209	ENST00000434453	SCAF11	Q99590	1463 aa	Known RBP	33.25	■■■□□ 2.91
LMBR1-209	ENST00000434453	CDCA7L	Q96GN5	454 aa		33.24	■■■□□ 2.91
LMBR1-209	ENST00000434453	STAC3	Q96MF2	364 aa		33.23	■■■□□ 2.91
LMBR1-209	ENST00000434453	KIAA1210	Q9ULL0	1709 aa		33.21	■■■□□ 2.91
LMBR1-209	ENST00000434453	SYNM	O15061	1565 aa		33.2	■■■□□ 2.91
LMBR1-209	ENST00000434453	ADGRL1	O94910	1474 aa		33.2	■■■□□ 2.91
LMBR1-209	ENST00000434453	MYOM1	P52179	1685 aa		33.2	■■■□□ 2.91
LMBR1-209	ENST00000434453	NEURL4	Q96JN8	1562 aa		33.19	■■■□□ 2.9
LMBR1-209	ENST00000434453	KIF3B	O15066	747 aa		33.18	■■■□□ 2.9
LMBR1-209	ENST00000434453	KANK1	Q14678	1352 aa		33.18	■■■□□ 2.9
LMBR1-209	ENST00000434453	AMER1	Q5JTC6	1135 aa	Predicted RBP	33.16	■■■□□ 2.9

Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms