RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 EPRSP07814 1512 aaKnown RBP10.74□□□□□ -0.69
HPS4-205ENST00000429411 UGGT2Q9NYU1 1516 aa10.74□□□□□ -0.69
HPS4-205ENST00000429411 DHX37Q8IY37 1157 aaKnown RBP10.74□□□□□ -0.69
HPS4-205ENST00000429411 NUDCQ9Y266 331 aa10.74□□□□□ -0.69
HPS4-205ENST00000429411 NOP58Q9Y2X3 529 aaKnown RBP10.72□□□□□ -0.69
HPS4-205ENST00000429411 CEBPAP49715 358 aaPredicted RBP10.72□□□□□ -0.69
HPS4-205ENST00000429411 LAS1LQ9Y4W2 734 aaKnown RBP10.72□□□□□ -0.69
HPS4-205ENST00000429411 NUP153P49790 1475 aaKnown RBP10.72□□□□□ -0.69
HPS4-205ENST00000429411 SAMD9Q5K651 1589 aa10.71□□□□□ -0.69
HPS4-205ENST00000429411 PLIN1O60240 522 aa10.71□□□□□ -0.69
HPS4-205ENST00000429411 WDR7Q9Y4E6 1490 aa10.71□□□□□ -0.7
HPS4-205ENST00000429411 ANKRD30AQ9BXX3 1397 aa10.71□□□□□ -0.7
HPS4-205ENST00000429411 ANO8Q9HCE9 1232 aaPredicted RBP10.71□□□□□ -0.7
HPS4-205ENST00000429411 ADCY10Q96PN6 1610 aa10.7□□□□□ -0.7
HPS4-205ENST00000429411 ROCK2O75116 1388 aaKnown RBP10.7□□□□□ -0.7
HPS4-205ENST00000429411 DAPK1P53355 1430 aa10.7□□□□□ -0.7
HPS4-205ENST00000429411 CHGAP10645 457 aaKnown RBP10.7□□□□□ -0.7
HPS4-205ENST00000429411 ANKRD30BQ9BXX2 1392 aa10.69□□□□□ -0.7
HPS4-205ENST00000429411 EXOC6Q8TAG9 804 aa10.69□□□□□ -0.7
HPS4-205ENST00000429411 SPAG9O60271 1321 aaKnown RBP10.69□□□□□ -0.7
HPS4-205ENST00000429411 ABCC10Q5T3U5 1492 aa10.69□□□□□ -0.7
HPS4-205ENST00000429411 MAGI3Q5TCQ9 1506 aa10.68□□□□□ -0.7
HPS4-205ENST00000429411 DEKP35659 375 aaKnown RBP10.68□□□□□ -0.7
HPS4-205ENST00000429411 SCAPERQ9BY12 1400 aa10.68□□□□□ -0.7
HPS4-205ENST00000429411 KIF3BO15066 747 aa10.68□□□□□ -0.7
HPS4-205ENST00000429411 ABCC5O15440 1437 aa10.68□□□□□ -0.7
HPS4-205ENST00000429411 PAK3O75914 559 aaPredicted RBP10.67□□□□□ -0.7
HPS4-205ENST00000429411 FANCIQ9NVI1 1328 aa10.67□□□□□ -0.7
HPS4-205ENST00000429411 CHMP4AQ9BY43 222 aa10.67□□□□□ -0.7
HPS4-205ENST00000429411 RCAN3Q9UKA8 241 aa10.67□□□□□ -0.7
HPS4-205ENST00000429411 WDR43Q15061 677 aaKnown RBP eCLIP10.67□□□□□ -0.7
HPS4-205ENST00000429411 ERICH6BQ5W0A0 696 aa10.67□□□□□ -0.7
HPS4-205ENST00000429411 KDM6BO15054 1643 aa10.66□□□□□ -0.7
HPS4-205ENST00000429411 NBPF1Q3BBV0 1214 aa10.66□□□□□ -0.7
HPS4-205ENST00000429411 CDCA7LQ96GN5 454 aa10.66□□□□□ -0.7
HPS4-205ENST00000429411 NCOA1Q15788 1441 aa10.66□□□□□ -0.7
HPS4-205ENST00000429411 HECW1Q76N89 1606 aa10.65□□□□□ -0.7
HPS4-205ENST00000429411 MIA2Q96PC5 1412 aa10.65□□□□□ -0.7
HPS4-205ENST00000429411 HSPA2P54652 639 aa10.65□□□□□ -0.7
HPS4-205ENST00000429411 SKAP1Q86WV1 359 aa10.65□□□□□ -0.7
HPS4-205ENST00000429411 ANKRD50Q9ULJ7 1429 aa10.65□□□□□ -0.7
HPS4-205ENST00000429411 CANXP27824 592 aaKnown RBP10.64□□□□□ -0.71
HPS4-205ENST00000429411 ARHGAP5Q13017 1502 aa10.64□□□□□ -0.71
HPS4-205ENST00000429411 TNNT2P45379 298 aaPredicted RBP10.64□□□□□ -0.71
HPS4-205ENST00000429411 PNISRQ8TF01 805 aaKnown RBP10.64□□□□□ -0.71
HPS4-205ENST00000429411 NEUROD2Q15784 382 aa10.63□□□□□ -0.71
HPS4-205ENST00000429411 SHROOM2Q13796 1616 aa10.63□□□□□ -0.71
HPS4-205ENST00000429411 RGS3P49796 1198 aa10.63□□□□□ -0.71
HPS4-205ENST00000429411 STAG3Q9UJ98 1225 aa10.63□□□□□ -0.71
HPS4-205ENST00000429411 KDM5BQ9UGL1 1544 aa10.63□□□□□ -0.71
HPS4-205ENST00000429411 PANK3Q9H999 370 aa10.63□□□□□ -0.71
HPS4-205ENST00000429411 FANCAO15360 1455 aa10.62□□□□□ -0.71
HPS4-205ENST00000429411 TROQ12816 1431 aaPredicted RBP10.62□□□□□ -0.71
HPS4-205ENST00000429411 KNSTRNQ9Y448 316 aa10.62□□□□□ -0.71
HPS4-205ENST00000429411 KTN1Q86UP2 1357 aaKnown RBP10.62□□□□□ -0.71
HPS4-205ENST00000429411 RPRD2Q5VT52 1461 aaKnown RBP10.62□□□□□ -0.71
HPS4-205ENST00000429411 COL17A1Q9UMD9 1497 aaPredicted RBP10.62□□□□□ -0.71
HPS4-205ENST00000429411 MYBBP1AQ9BQG0 1328 aaKnown RBP10.62□□□□□ -0.71
HPS4-205ENST00000429411 KIF15Q9NS87 1388 aa10.61□□□□□ -0.71
HPS4-205ENST00000429411 RAPGEF6Q8TEU7 1601 aa10.61□□□□□ -0.71
HPS4-205ENST00000429411 NLRP13Q86W25 1043 aa10.61□□□□□ -0.71
HPS4-205ENST00000429411 RRP1P56182 461 aaKnown RBP10.61□□□□□ -0.71
HPS4-205ENST00000429411 RALBP1Q15311 655 aa10.6□□□□□ -0.71
HPS4-205ENST00000429411 CCDC146Q8IYE0 955 aa10.6□□□□□ -0.71
HPS4-205ENST00000429411 BCL11BQ9C0K0 894 aaPredicted RBP10.6□□□□□ -0.71
HPS4-205ENST00000429411 KIAA1107Q9UPP5 1409 aa10.6□□□□□ -0.71
HPS4-205ENST00000429411 TMF1P82094 1093 aa10.6□□□□□ -0.71
HPS4-205ENST00000429411 ADGRL1O94910 1474 aa10.59□□□□□ -0.71
HPS4-205ENST00000429411 NEFMP07197 916 aa10.59□□□□□ -0.71
HPS4-205ENST00000429411 IPO9Q96P70 1041 aaKnown RBP10.59□□□□□ -0.71
HPS4-205ENST00000429411 ZCCHC11Q5TAX3 1644 aaKnown RBP10.59□□□□□ -0.71
HPS4-205ENST00000429411 SLC4A3P48751 1232 aa10.59□□□□□ -0.71
HPS4-205ENST00000429411 WASHC2CQ9Y4E1 1318 aa10.58□□□□□ -0.72
HPS4-205ENST00000429411 CAMSAP2Q08AD1 1489 aa10.58□□□□□ -0.72
HPS4-205ENST00000429411 CCDC144AA2RUR9 1427 aa10.57□□□□□ -0.72
HPS4-205ENST00000429411 ABCA8O94911 1581 aa10.57□□□□□ -0.72
HPS4-205ENST00000429411 DENND4BO75064 1496 aaPredicted RBP10.57□□□□□ -0.72
HPS4-205ENST00000429411 ROCK1Q13464 1354 aa10.57□□□□□ -0.72
HPS4-205ENST00000429411 KDM4FA0A1W2PPD8 638 aa10.57□□□□□ -0.72
HPS4-205ENST00000429411 CRBNQ96SW2 442 aa10.57□□□□□ -0.72
HPS4-205ENST00000429411 NUTM2DQ5VT03 806 aaPredicted RBP10.57□□□□□ -0.72
HPS4-205ENST00000429411 UHRF1BP1LA0JNW5 1464 aa10.56□□□□□ -0.72
HPS4-205ENST00000429411 LRRIQ1Q96JM4 1722 aa10.56□□□□□ -0.72
HPS4-205ENST00000429411 TEX14Q8IWB6 1497 aa10.56□□□□□ -0.72
HPS4-205ENST00000429411 C9orf84Q5VXU9 1444 aa10.55□□□□□ -0.72
HPS4-205ENST00000429411 PDE4AP27815 886 aa10.55□□□□□ -0.72
HPS4-205ENST00000429411 TCOF1Q13428 1488 aaKnown RBP10.55□□□□□ -0.72
HPS4-205ENST00000429411 YEATS2Q9ULM3 1422 aa10.54□□□□□ -0.72
HPS4-205ENST00000429411 A0A0U1RQG5 324 aaPredicted RBP10.54□□□□□ -0.72
HPS4-205ENST00000429411 SMG6Q86US8 1419 aaKnown RBP10.54□□□□□ -0.72
HPS4-205ENST00000429411 FRAT1Q92837 279 aaPredicted RBP10.54□□□□□ -0.72
HPS4-205ENST00000429411 TRAPPC8Q9Y2L5 1435 aa10.54□□□□□ -0.72
HPS4-205ENST00000429411 ADAMTS8Q9UP79 889 aa10.53□□□□□ -0.72
HPS4-205ENST00000429411 DIP2BQ9P265 1576 aa10.53□□□□□ -0.72
HPS4-205ENST00000429411 FBXO31Q5XUX0 539 aaPredicted RBP10.53□□□□□ -0.72
HPS4-205ENST00000429411 GPATCH8Q9UKJ3 1502 aaKnown RBP10.52□□□□□ -0.72
HPS4-205ENST00000429411 DHX29Q7Z478 1369 aaKnown RBP10.52□□□□□ -0.72
HPS4-205ENST00000429411 PLCH2O75038 1416 aa10.52□□□□□ -0.73
HPS4-205ENST00000429411 TCERG1O14776 1098 aaKnown RBP10.51□□□□□ -0.73
HPS4-205ENST00000429411 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms