RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 NISCHQ9Y2I1 1504 aa15.79■□□□□ 0.12
HPS4-205ENST00000429411 DCAF8L2P0C7V8 631 aa14.52□□□□□ -0.09
HPS4-205ENST00000429411 ABCC9O60706 1549 aa14.2□□□□□ -0.14
HPS4-205ENST00000429411 SHROOM4Q9ULL8 1493 aa14.12□□□□□ -0.15
HPS4-205ENST00000429411 SUPT5HO00267 1087 aaKnown RBP13.99□□□□□ -0.17
HPS4-205ENST00000429411 CCDC180Q9P1Z9 1646 aa13.66□□□□□ -0.22
HPS4-205ENST00000429411 PABPN1Q86U42 306 aaKnown RBP eCLIP13.62□□□□□ -0.23
HPS4-205ENST00000429411 SLC24A1O60721 1099 aa13.38□□□□□ -0.27
HPS4-205ENST00000429411 PCGF6Q9BYE7 350 aa13.29□□□□□ -0.28
HPS4-205ENST00000429411 EHMT2Q96KQ7 1210 aa13.24□□□□□ -0.29
HPS4-205ENST00000429411 CHIC1Q5VXU3 224 aa13.2□□□□□ -0.3
HPS4-205ENST00000429411 ZCCHC6Q5VYS8 1495 aaKnown RBP13.12□□□□□ -0.31
HPS4-205ENST00000429411 RB1CC1Q8TDY2 1594 aa13.11□□□□□ -0.31
HPS4-205ENST00000429411 LOC105371045A0A1W2PR82 267 aa13.1□□□□□ -0.31
HPS4-205ENST00000429411 FAM9AQ8IZU1 332 aaPredicted RBP13.07□□□□□ -0.32
HPS4-205ENST00000429411 DNAJC5BQ9UF47 199 aa13.07□□□□□ -0.32
HPS4-205ENST00000429411 SCRIBQ14160 1630 aa13.05□□□□□ -0.32
HPS4-205ENST00000429411 PPARGC1BQ86YN6 1023 aaKnown RBP13.03□□□□□ -0.32
HPS4-205ENST00000429411 HRCP23327 699 aa13.01□□□□□ -0.33
HPS4-205ENST00000429411 NACADO15069 1562 aa12.99□□□□□ -0.33
HPS4-205ENST00000429411 MYO15BQ96JP2 1530 aa12.97□□□□□ -0.33
HPS4-205ENST00000429411 DCAF1Q9Y4B6 1507 aa12.92□□□□□ -0.34
HPS4-205ENST00000429411 TRIM41Q8WV44 630 aa12.85□□□□□ -0.35
HPS4-205ENST00000429411 TTBK1Q5TCY1 1321 aaPredicted RBP12.79□□□□□ -0.36
HPS4-205ENST00000429411 TRIM26Q12899 539 aaPredicted RBP12.71□□□□□ -0.37
HPS4-205ENST00000429411 MYT1Q01538 1121 aa12.65□□□□□ -0.38
HPS4-205ENST00000429411 PELP1Q8IZL8 1130 aaKnown RBP12.65□□□□□ -0.38
HPS4-205ENST00000429411 BICRAQ9NZM4 1560 aa12.6□□□□□ -0.39
HPS4-205ENST00000429411 CECR2Q9BXF3 1484 aa12.59□□□□□ -0.39
HPS4-205ENST00000429411 PRKCSHP14314 528 aaPredicted RBP12.52□□□□□ -0.4
HPS4-205ENST00000429411 UNC13AQ9UPW8 1703 aa12.52□□□□□ -0.41
HPS4-205ENST00000429411 CCER1Q8TC90 406 aaPredicted RBP12.49□□□□□ -0.41
HPS4-205ENST00000429411 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.46□□□□□ -0.42
HPS4-205ENST00000429411 ZEB1P37275 1124 aaPredicted RBP12.46□□□□□ -0.42
HPS4-205ENST00000429411 RANGAP1P46060 587 aaPredicted RBP12.46□□□□□ -0.42
HPS4-205ENST00000429411 EIF4G1Q04637 1599 aaKnown RBP12.44□□□□□ -0.42
HPS4-205ENST00000429411 CC2D2AQ9P2K1 1620 aa12.42□□□□□ -0.42
HPS4-205ENST00000429411 RSF1Q96T23 1441 aaPredicted RBP12.41□□□□□ -0.42
HPS4-205ENST00000429411 UBTFP17480 764 aaKnown RBP12.38□□□□□ -0.43
HPS4-205ENST00000429411 MROH2BQ7Z745 1585 aa12.33□□□□□ -0.44
HPS4-205ENST00000429411 BAZ1BQ9UIG0 1483 aaKnown RBP12.29□□□□□ -0.44
HPS4-205ENST00000429411 ERICH6Q7L0X2 663 aa12.28□□□□□ -0.44
HPS4-205ENST00000429411 DAXXQ9UER7 740 aaPredicted RBP12.27□□□□□ -0.45
HPS4-205ENST00000429411 ERCC6Q03468 1493 aa12.26□□□□□ -0.45
HPS4-205ENST00000429411 ATAD2BQ9ULI0 1458 aa12.26□□□□□ -0.45
HPS4-205ENST00000429411 YTHDC1Q96MU7 727 aaKnown RBP12.24□□□□□ -0.45
HPS4-205ENST00000429411 BAZ1AQ9NRL2 1556 aaPredicted RBP12.22□□□□□ -0.45
HPS4-205ENST00000429411 HNRNPUL2Q1KMD3 747 aaKnown RBP12.21□□□□□ -0.45
HPS4-205ENST00000429411 NESP48681 1621 aa12.19□□□□□ -0.46
HPS4-205ENST00000429411 APLP2Q06481 763 aa12.19□□□□□ -0.46
HPS4-205ENST00000429411 SMARCA4P51532 1647 aa12.16□□□□□ -0.46
HPS4-205ENST00000429411 FBLN2P98095 1184 aa12.15□□□□□ -0.46
HPS4-205ENST00000429411 DIEXFQ68CQ4 756 aaKnown RBP12.14□□□□□ -0.47
HPS4-205ENST00000429411 WIZO95785 1651 aa12.14□□□□□ -0.47
HPS4-205ENST00000429411 SCAF1Q9H7N4 1312 aaKnown RBP12.13□□□□□ -0.47
HPS4-205ENST00000429411 NCAPD3P42695 1498 aa12.12□□□□□ -0.47
HPS4-205ENST00000429411 SMARCA2P51531 1590 aa12.11□□□□□ -0.47
HPS4-205ENST00000429411 CENPBP07199 599 aaPredicted RBP12.1□□□□□ -0.47
HPS4-205ENST00000429411 PLPPR3Q6T4P5 718 aa12.06□□□□□ -0.48
HPS4-205ENST00000429411 CSRNP3Q8WYN3 585 aa12.06□□□□□ -0.48
HPS4-205ENST00000429411 GTF3C3Q9Y5Q9 886 aa12.04□□□□□ -0.48
HPS4-205ENST00000429411 NEUROD1Q13562 356 aa12.03□□□□□ -0.48
HPS4-205ENST00000429411 CADPSQ9ULU8 1353 aa12.02□□□□□ -0.49
HPS4-205ENST00000429411 ITGAEP38570 1179 aa12.01□□□□□ -0.49
HPS4-205ENST00000429411 ABCC8Q09428 1581 aa12□□□□□ -0.49
HPS4-205ENST00000429411 ACIN1Q9UKV3 1341 aaKnown RBP11.99□□□□□ -0.49
HPS4-205ENST00000429411 SOGA1O94964 1423 aa11.97□□□□□ -0.49
HPS4-205ENST00000429411 CCDC88BA6NC98 1476 aa11.97□□□□□ -0.49
HPS4-205ENST00000429411 PDS5BQ9NTI5 1447 aa11.96□□□□□ -0.49
HPS4-205ENST00000429411 CEP162Q5TB80 1403 aa11.95□□□□□ -0.5
HPS4-205ENST00000429411 ATP1B4Q9UN42 357 aaPredicted RBP11.95□□□□□ -0.5
HPS4-205ENST00000429411 ZNF316A6NFI3 1004 aaPredicted RBP11.92□□□□□ -0.5
HPS4-205ENST00000429411 PEG3Q9GZU2 1588 aa11.89□□□□□ -0.51
HPS4-205ENST00000429411 RTN4Q9NQC3 1192 aaKnown RBP11.89□□□□□ -0.51
HPS4-205ENST00000429411 FANCD2Q9BXW9 1451 aa11.88□□□□□ -0.51
HPS4-205ENST00000429411 HMGXB3Q12766 1538 aa11.87□□□□□ -0.51
HPS4-205ENST00000429411 RUSC2Q8N2Y8 1516 aa11.87□□□□□ -0.51
HPS4-205ENST00000429411 TOP2AP11388 1531 aaKnown RBP11.85□□□□□ -0.51
HPS4-205ENST00000429411 TDRD9Q8NDG6 1382 aaKnown RBP11.84□□□□□ -0.51
HPS4-205ENST00000429411 CEP164Q9UPV0 1460 aa11.84□□□□□ -0.51
HPS4-205ENST00000429411 MIER1Q8N108 512 aa11.83□□□□□ -0.52
HPS4-205ENST00000429411 TNIKQ9UKE5 1360 aa11.81□□□□□ -0.52
HPS4-205ENST00000429411 CHMP7Q8WUX9 453 aaPredicted RBP11.8□□□□□ -0.52
HPS4-205ENST00000429411 WRNQ14191 1432 aaPredicted RBP eCLIP11.79□□□□□ -0.529e-6■■■■■ 50.1
HPS4-205ENST00000429411 EIF5BO60841 1220 aaKnown RBP11.78□□□□□ -0.52
HPS4-205ENST00000429411 CLIP1P30622 1438 aa11.77□□□□□ -0.52
HPS4-205ENST00000429411 GOLGA3Q08378 1498 aa11.76□□□□□ -0.53
HPS4-205ENST00000429411 CFTRP13569 1480 aa11.75□□□□□ -0.53
HPS4-205ENST00000429411 P3H3Q8IVL6 736 aa11.73□□□□□ -0.53
HPS4-205ENST00000429411 RAD54L2Q9Y4B4 1467 aa11.72□□□□□ -0.53
HPS4-205ENST00000429411 AQRO60306 1485 aaKnown RBP eCLIP11.71□□□□□ -0.533e-8■■■■□ 23.3
HPS4-205ENST00000429411 MRC2Q9UBG0 1479 aa11.7□□□□□ -0.54
HPS4-205ENST00000429411 NCBP3Q53F19 620 aaKnown RBP11.7□□□□□ -0.54
HPS4-205ENST00000429411 FAM50AQ14320 339 aaKnown RBP11.69□□□□□ -0.54
HPS4-205ENST00000429411 CYB5RLQ6IPT4 315 aa11.69□□□□□ -0.54
HPS4-205ENST00000429411 OSCARQ8IYS5 282 aa11.69□□□□□ -0.54
HPS4-205ENST00000429411 ARID3CA6NKF2 412 aa11.69□□□□□ -0.54
HPS4-205ENST00000429411 LAMC3Q9Y6N6 1575 aa11.69□□□□□ -0.54
HPS4-205ENST00000429411 EEA1Q15075 1411 aa11.68□□□□□ -0.54
HPS4-205ENST00000429411 URB2Q14146 1524 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms