RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 PTPN23Q9H3S7 1636 aa14.2□□□□□ -0.14
SMC1A-203ENST00000428014 EIF2AK4Q9P2K8 1649 aaKnown RBP14.19□□□□□ -0.14
SMC1A-203ENST00000428014 DNMT1P26358 1616 aaKnown RBP14.19□□□□□ -0.14
SMC1A-203ENST00000428014 CROCC2H7BZ55 1655 aa14.17□□□□□ -0.14
SMC1A-203ENST00000428014 ABCC5O15440 1437 aa14.16□□□□□ -0.14
SMC1A-203ENST00000428014 DUOX2Q9NRD8 1548 aa14.16□□□□□ -0.14
SMC1A-203ENST00000428014 ESF1Q9H501 851 aaKnown RBP14.16□□□□□ -0.14
SMC1A-203ENST00000428014 ADGRL2O95490 1459 aa14.16□□□□□ -0.14
SMC1A-203ENST00000428014 LMTK3Q96Q04 1460 aa14.16□□□□□ -0.14
SMC1A-203ENST00000428014 ERBINQ96RT1 1412 aa14.15□□□□□ -0.14
SMC1A-203ENST00000428014 KDM5DQ9BY66 1539 aa14.15□□□□□ -0.14
SMC1A-203ENST00000428014 RNF17Q9BXT8 1623 aaKnown RBP14.15□□□□□ -0.14
SMC1A-203ENST00000428014 DAPK1P53355 1430 aa14.15□□□□□ -0.14
SMC1A-203ENST00000428014 PREX1Q8TCU6 1659 aa14.14□□□□□ -0.15
SMC1A-203ENST00000428014 ZMYM3Q14202 1370 aa14.12□□□□□ -0.15
SMC1A-203ENST00000428014 ANKRD30AQ9BXX3 1397 aa14.12□□□□□ -0.15
SMC1A-203ENST00000428014 C3P01024 1663 aa14.12□□□□□ -0.15
SMC1A-203ENST00000428014 ZC3H13Q5T200 1668 aaKnown RBP14.12□□□□□ -0.15
SMC1A-203ENST00000428014 MLECQ14165 292 aa14.12□□□□□ -0.15
SMC1A-203ENST00000428014 NCOA1Q15788 1441 aa14.11□□□□□ -0.15
SMC1A-203ENST00000428014 ROCK1Q13464 1354 aa14.1□□□□□ -0.15
SMC1A-203ENST00000428014 UHRF1BP1Q6BDS2 1440 aa14.1□□□□□ -0.15
SMC1A-203ENST00000428014 KIF15Q9NS87 1388 aa14.09□□□□□ -0.15
SMC1A-203ENST00000428014 PTPRKQ15262 1439 aa14.08□□□□□ -0.15
SMC1A-203ENST00000428014 ARHGAP31Q2M1Z3 1444 aa14.08□□□□□ -0.15
SMC1A-203ENST00000428014 PZPP20742 1482 aa14.08□□□□□ -0.16
SMC1A-203ENST00000428014 KIF3BO15066 747 aa14.08□□□□□ -0.16
SMC1A-203ENST00000428014 PRDM15P57071 1507 aaPredicted RBP14.08□□□□□ -0.16
SMC1A-203ENST00000428014 DEPDC5O75140 1603 aa14.07□□□□□ -0.16
SMC1A-203ENST00000428014 RRBP1Q9P2E9 1410 aaKnown RBP14.07□□□□□ -0.16
SMC1A-203ENST00000428014 GGT6Q6P531 493 aa14.06□□□□□ -0.16
SMC1A-203ENST00000428014 LMTK2Q8IWU2 1503 aa14.05□□□□□ -0.16
SMC1A-203ENST00000428014 CLTCQ00610 1675 aaKnown RBP14.05□□□□□ -0.16
SMC1A-203ENST00000428014 MROH1Q8NDA8 1641 aa14.04□□□□□ -0.16
SMC1A-203ENST00000428014 ZNF142P52746 1687 aaPredicted RBP14.04□□□□□ -0.16
SMC1A-203ENST00000428014 WASHC2CQ9Y4E1 1318 aa14.04□□□□□ -0.16
SMC1A-203ENST00000428014 PLA2R1Q13018 1463 aa14.04□□□□□ -0.16
SMC1A-203ENST00000428014 NLRP1Q9C000 1473 aa14.03□□□□□ -0.16
SMC1A-203ENST00000428014 ABCC3O15438 1527 aa14.03□□□□□ -0.16
SMC1A-203ENST00000428014 VWDEQ8N2E2 1590 aa14.03□□□□□ -0.16
SMC1A-203ENST00000428014 CEBPAP49715 358 aaPredicted RBP14.02□□□□□ -0.17
SMC1A-203ENST00000428014 SPATA31D1Q6ZQQ2 1576 aa14□□□□□ -0.17
SMC1A-203ENST00000428014 ANKRD50Q9ULJ7 1429 aa14□□□□□ -0.17
SMC1A-203ENST00000428014 KANK1Q14678 1352 aa14□□□□□ -0.17
SMC1A-203ENST00000428014 A2ML1A8K2U0 1454 aa13.99□□□□□ -0.17
SMC1A-203ENST00000428014 PTPRTO14522 1441 aa13.99□□□□□ -0.17
SMC1A-203ENST00000428014 RPRD2Q5VT52 1461 aaKnown RBP13.99□□□□□ -0.17
SMC1A-203ENST00000428014 FAM50AQ14320 339 aaKnown RBP13.98□□□□□ -0.17
SMC1A-203ENST00000428014 MYO3AQ8NEV4 1616 aa13.97□□□□□ -0.17
SMC1A-203ENST00000428014 CEP170BQ9Y4F5 1589 aaPredicted RBP13.97□□□□□ -0.17
SMC1A-203ENST00000428014 ACIN1Q9UKV3 1341 aaKnown RBP13.97□□□□□ -0.17
SMC1A-203ENST00000428014 RRP7BPQ9NSQ0 103 aa13.97□□□□□ -0.17
SMC1A-203ENST00000428014 TNRQ92752 1358 aa13.96□□□□□ -0.17
SMC1A-203ENST00000428014 PKD2Q13563 968 aa13.96□□□□□ -0.17
SMC1A-203ENST00000428014 CAMSAP1Q5T5Y3 1602 aa13.95□□□□□ -0.18
SMC1A-203ENST00000428014 KDM5AP29375 1690 aaKnown RBP13.95□□□□□ -0.18
SMC1A-203ENST00000428014 ERVK-7P63135 1459 aa13.94□□□□□ -0.18
SMC1A-203ENST00000428014 UNC13BO14795 1591 aa13.94□□□□□ -0.18
SMC1A-203ENST00000428014 POTEDQ86YR6 584 aa13.94□□□□□ -0.18
SMC1A-203ENST00000428014 STRCQ7RTU9 1775 aa13.94□□□□□ -0.18
SMC1A-203ENST00000428014 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
SMC1A-203ENST00000428014 EFCAB6Q5THR3 1501 aa13.92□□□□□ -0.18
SMC1A-203ENST00000428014 HSPA2P54652 639 aa13.91□□□□□ -0.18
SMC1A-203ENST00000428014 THEMISQ8N1K5 641 aaPredicted RBP13.91□□□□□ -0.18
SMC1A-203ENST00000428014 CHIC2Q9UKJ5 165 aa13.91□□□□□ -0.18
SMC1A-203ENST00000428014 NOS1P29475 1434 aa13.9□□□□□ -0.18
SMC1A-203ENST00000428014 TET3O43151 1660 aa13.9□□□□□ -0.18
SMC1A-203ENST00000428014 CEP152O94986 1710 aa13.9□□□□□ -0.18
SMC1A-203ENST00000428014 HFM1A2PYH4 1435 aa13.9□□□□□ -0.19
SMC1A-203ENST00000428014 MED14O60244 1454 aa13.89□□□□□ -0.19
SMC1A-203ENST00000428014 SLC52A1Q9NWF4 448 aa13.89□□□□□ -0.19
SMC1A-203ENST00000428014 UGGT1Q9NYU2 1555 aa13.88□□□□□ -0.19
SMC1A-203ENST00000428014 FBXO31Q5XUX0 539 aaPredicted RBP13.88□□□□□ -0.19
SMC1A-203ENST00000428014 IQGAP3Q86VI3 1631 aa13.88□□□□□ -0.19
SMC1A-203ENST00000428014 IQSEC2Q5JU85 1478 aa13.87□□□□□ -0.19
SMC1A-203ENST00000428014 GCC2Q8IWJ2 1684 aa13.87□□□□□ -0.19
SMC1A-203ENST00000428014 ARHGAP23Q9P227 1491 aa13.86□□□□□ -0.19
SMC1A-203ENST00000428014 SLIT1O75093 1534 aa13.85□□□□□ -0.19
SMC1A-203ENST00000428014 NAIPQ13075 1403 aa13.85□□□□□ -0.19
SMC1A-203ENST00000428014 ANKLE2Q86XL3 938 aa13.83□□□□□ -0.2
SMC1A-203ENST00000428014 POLR1AO95602 1720 aaPredicted RBP13.82□□□□□ -0.2
SMC1A-203ENST00000428014 UBR1Q8IWV7 1749 aa13.82□□□□□ -0.2
SMC1A-203ENST00000428014 PIK3C2BO00750 1634 aa13.8□□□□□ -0.2
SMC1A-203ENST00000428014 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.8□□□□□ -0.25e-8■■■□□ 18.3
SMC1A-203ENST00000428014 NUP155O75694 1391 aa13.8□□□□□ -0.2
SMC1A-203ENST00000428014 SYNMO15061 1565 aa13.79□□□□□ -0.2
SMC1A-203ENST00000428014 NEURL4Q96JN8 1562 aa13.79□□□□□ -0.2
SMC1A-203ENST00000428014 LTBP4Q8N2S1 1624 aa13.79□□□□□ -0.2
SMC1A-203ENST00000428014 TMEM2Q9UHN6 1383 aa13.78□□□□□ -0.2
SMC1A-203ENST00000428014 E9PCH4 1651 aa13.77□□□□□ -0.21
SMC1A-203ENST00000428014 ADGRB3O60242 1522 aa13.77□□□□□ -0.21
SMC1A-203ENST00000428014 HDGFP51858 240 aaKnown RBP13.77□□□□□ -0.21
SMC1A-203ENST00000428014 IDI1Q13907 227 aa13.77□□□□□ -0.21
SMC1A-203ENST00000428014 FBXO41Q8TF61 875 aa13.77□□□□□ -0.21
SMC1A-203ENST00000428014 SCAF11Q99590 1463 aaKnown RBP13.77□□□□□ -0.21
SMC1A-203ENST00000428014 CPS1P31327 1500 aa13.76□□□□□ -0.21
SMC1A-203ENST00000428014 NPHP4O75161 1426 aaPredicted RBP13.76□□□□□ -0.21
SMC1A-203ENST00000428014 ZBTB22O15209 634 aa13.76□□□□□ -0.21
SMC1A-203ENST00000428014 HRCP23327 699 aa13.76□□□□□ -0.21
SMC1A-203ENST00000428014 CERKQ8TCT0 537 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms