RNA–Protein interactions for RNA: ENST00000413642.7

VEGFA-207, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,197 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-207ENST00000413642 SHANK2Q9UPX8 1470 aa40.78■■■■■ 4.12
VEGFA-207ENST00000413642 FAM50AQ14320 339 aaKnown RBP40.78■■■■■ 4.12
VEGFA-207ENST00000413642 DNMT1P26358 1616 aaKnown RBP40.76■■■■■ 4.12
VEGFA-207ENST00000413642 KIF15Q9NS87 1388 aa40.75■■■■■ 4.11
VEGFA-207ENST00000413642 FBXO31Q5XUX0 539 aaPredicted RBP40.74■■■■■ 4.11
VEGFA-207ENST00000413642 KDM5DQ9BY66 1539 aa40.73■■■■■ 4.11
VEGFA-207ENST00000413642 CROCC2H7BZ55 1655 aa40.73■■■■■ 4.11
VEGFA-207ENST00000413642 DUOX2Q9NRD8 1548 aa40.72■■■■■ 4.11
VEGFA-207ENST00000413642 ILDR1Q86SU0 546 aaPredicted RBP40.68■■■■■ 4.1
VEGFA-207ENST00000413642 RNF17Q9BXT8 1623 aaKnown RBP40.66■■■■■ 4.1
VEGFA-207ENST00000413642 FAM135AQ9P2D6 1515 aa40.64■■■■■ 4.1
VEGFA-207ENST00000413642 EIF2AK4Q9P2K8 1649 aaKnown RBP40.64■■■■■ 4.1
VEGFA-207ENST00000413642 ANKRD30AQ9BXX3 1397 aa40.62■■■■■ 4.09
VEGFA-207ENST00000413642 STRCQ7RTU9 1775 aa40.62■■■■■ 4.09
VEGFA-207ENST00000413642 PZPP20742 1482 aa40.62■■■■■ 4.09
VEGFA-207ENST00000413642 MROH1Q8NDA8 1641 aa40.61■■■■■ 4.09
VEGFA-207ENST00000413642 MYO3AQ8NEV4 1616 aa40.6■■■■■ 4.09
VEGFA-207ENST00000413642 ABCC3O15438 1527 aa40.6■■■■■ 4.09
VEGFA-207ENST00000413642 NCOA1Q15788 1441 aa40.59■■■■■ 4.09
VEGFA-207ENST00000413642 ERBINQ96RT1 1412 aa40.59■■■■■ 4.09
VEGFA-207ENST00000413642 TNRQ92752 1358 aa40.58■■■■■ 4.09
VEGFA-207ENST00000413642 GRWD1Q9BQ67 446 aaKnown RBP eCLIP40.55■■■■■ 4.081e-14■■■□□ 16.5
VEGFA-207ENST00000413642 DMRT2Q9Y5R5 561 aa40.55■■■■■ 4.08
VEGFA-207ENST00000413642 CAMSAP1Q5T5Y3 1602 aa40.54■■■■■ 4.08
VEGFA-207ENST00000413642 CEP170BQ9Y4F5 1589 aaPredicted RBP40.53■■■■■ 4.08
VEGFA-207ENST00000413642 NCKAP5LQ9HCH0 1330 aa40.51■■■■■ 4.08
VEGFA-207ENST00000413642 ADGRL2O95490 1459 aa40.5■■■■■ 4.07
VEGFA-207ENST00000413642 A2ML1A8K2U0 1454 aa40.48■■■■■ 4.07
VEGFA-207ENST00000413642 ZNF142P52746 1687 aaPredicted RBP40.47■■■■■ 4.07
VEGFA-207ENST00000413642 PTPRTO14522 1441 aa40.45■■■■■ 4.07
VEGFA-207ENST00000413642 ZC3H13Q5T200 1668 aaKnown RBP40.44■■■■■ 4.06
VEGFA-207ENST00000413642 PRDM15P57071 1507 aaPredicted RBP40.43■■■■■ 4.06
VEGFA-207ENST00000413642 CEP152O94986 1710 aa40.42■■■■■ 4.06
VEGFA-207ENST00000413642 ITGAEP38570 1179 aa40.41■■■■■ 4.06
VEGFA-207ENST00000413642 ERVK-7P63135 1459 aa40.38■■■■■ 4.05
VEGFA-207ENST00000413642 PLA2R1Q13018 1463 aa40.38■■■■■ 4.05
VEGFA-207ENST00000413642 CERKQ8TCT0 537 aa40.37■■■■■ 4.05
VEGFA-207ENST00000413642 DEPDC5O75140 1603 aa40.36■■■■■ 4.05
VEGFA-207ENST00000413642 KANK1Q14678 1352 aa40.35■■■■■ 4.05
VEGFA-207ENST00000413642 ANKRD50Q9ULJ7 1429 aa40.35■■■■■ 4.05
VEGFA-207ENST00000413642 FBXO41Q8TF61 875 aa40.35■■■■■ 4.05
VEGFA-207ENST00000413642 SPATA31D1Q6ZQQ2 1576 aa40.35■■■■■ 4.05
VEGFA-207ENST00000413642 PKD2Q13563 968 aa40.34■■■■■ 4.05
VEGFA-207ENST00000413642 NLRP1Q9C000 1473 aa40.32■■■■■ 4.05
VEGFA-207ENST00000413642 ARHGAP31Q2M1Z3 1444 aa40.3■■■■■ 4.04
VEGFA-207ENST00000413642 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP40.28■■■■■ 4.043e-7■■□□□ 14.3
VEGFA-207ENST00000413642 VWDEQ8N2E2 1590 aa40.27■■■■■ 4.04
VEGFA-207ENST00000413642 THEMISQ8N1K5 641 aaPredicted RBP40.25■■■■■ 4.03
VEGFA-207ENST00000413642 ROCK1Q13464 1354 aa40.24■■■■■ 4.03
VEGFA-207ENST00000413642 UGGT1Q9NYU2 1555 aa40.24■■■■■ 4.03
VEGFA-207ENST00000413642 LMTK2Q8IWU2 1503 aa40.22■■■■■ 4.03
VEGFA-207ENST00000413642 CFAP65Q6ZU64 1925 aaKnown RBP40.18■■■■■ 4.02
VEGFA-207ENST00000413642 RRBP1Q9P2E9 1410 aaKnown RBP40.17■■■■■ 4.02
VEGFA-207ENST00000413642 ANKLE2Q86XL3 938 aa40.17■■■■■ 4.02
VEGFA-207ENST00000413642 ZNF335Q9H4Z2 1342 aaPredicted RBP40.16■■■■■ 4.02
VEGFA-207ENST00000413642 LTBP4Q8N2S1 1624 aa40.15■■■■■ 4.02
VEGFA-207ENST00000413642 NEURL4Q96JN8 1562 aa40.12■■■■■ 4.01
VEGFA-207ENST00000413642 EFCAB6Q5THR3 1501 aa40.1■■■■■ 4.01
VEGFA-207ENST00000413642 IDI1Q13907 227 aa40.05■■■■■ 4
VEGFA-207ENST00000413642 NOS1P29475 1434 aa40.04■■■■■ 4
VEGFA-207ENST00000413642 UNC13BO14795 1591 aa40.03■■■■■ 4
VEGFA-207ENST00000413642 POLR1AO95602 1720 aaPredicted RBP40.02■■■■■ 4
VEGFA-207ENST00000413642 UBR1Q8IWV7 1749 aa40.02■■■■■ 4
VEGFA-207ENST00000413642 NPHP4O75161 1426 aaPredicted RBP40.01■■■■■ 4
VEGFA-207ENST00000413642 SYNMO15061 1565 aa40.01■■■■□ 3.99
VEGFA-207ENST00000413642 PIK3C2BO00750 1634 aa39.98■■■■□ 3.99
VEGFA-207ENST00000413642 NUP155O75694 1391 aa39.97■■■■□ 3.99
VEGFA-207ENST00000413642 MED14O60244 1454 aa39.97■■■■□ 3.99
VEGFA-207ENST00000413642 LTKP29376 864 aa39.97■■■■□ 3.99
VEGFA-207ENST00000413642 STAG3Q9UJ98 1225 aa39.97■■■■□ 3.99
VEGFA-207ENST00000413642 TET3O43151 1660 aa39.94■■■■□ 3.98
VEGFA-207ENST00000413642 TXNDC2Q86VQ3 553 aa39.93■■■■□ 3.98
VEGFA-207ENST00000413642 RPRD2Q5VT52 1461 aaKnown RBP39.93■■■■□ 3.98
VEGFA-207ENST00000413642 ARHGAP23Q9P227 1491 aa39.93■■■■□ 3.98
VEGFA-207ENST00000413642 SLC52A1Q9NWF4 448 aa39.89■■■■□ 3.98
VEGFA-207ENST00000413642 SLIT1O75093 1534 aa39.89■■■■□ 3.98
VEGFA-207ENST00000413642 SCAF11Q99590 1463 aaKnown RBP39.88■■■■□ 3.98
VEGFA-207ENST00000413642 TMEM2Q9UHN6 1383 aa39.88■■■■□ 3.97
VEGFA-207ENST00000413642 IQGAP3Q86VI3 1631 aa39.87■■■■□ 3.97
VEGFA-207ENST00000413642 NAIPQ13075 1403 aa39.86■■■■□ 3.97
VEGFA-207ENST00000413642 EID1Q9Y6B2 187 aa39.84■■■■□ 3.97
VEGFA-207ENST00000413642 IQGAP1P46940 1657 aa39.83■■■■□ 3.97
VEGFA-207ENST00000413642 GCC2Q8IWJ2 1684 aa39.83■■■■□ 3.97
VEGFA-207ENST00000413642 IQSEC2Q5JU85 1478 aa39.81■■■■□ 3.96
VEGFA-207ENST00000413642 E9PCH4 1651 aa39.81■■■■□ 3.96
VEGFA-207ENST00000413642 ADGRB3O60242 1522 aa39.78■■■■□ 3.96
VEGFA-207ENST00000413642 KDM5AP29375 1690 aaKnown RBP39.73■■■■□ 3.95
VEGFA-207ENST00000413642 HFM1A2PYH4 1435 aa39.73■■■■□ 3.95
VEGFA-207ENST00000413642 CHGAP10645 457 aaKnown RBP39.72■■■■□ 3.95
VEGFA-207ENST00000413642 CPS1P31327 1500 aa39.71■■■■□ 3.95
VEGFA-207ENST00000413642 UBAP1LF5GYI3 381 aa39.69■■■■□ 3.94
VEGFA-207ENST00000413642 SENP3Q9H4L4 574 aaPredicted RBP39.69■■■■□ 3.94
VEGFA-207ENST00000413642 TRIM52Q96A61 297 aa39.66■■■■□ 3.94
VEGFA-207ENST00000413642 TMEM131LA2VDJ0 1609 aa39.63■■■■□ 3.93
VEGFA-207ENST00000413642 SLC26A8Q96RN1 970 aa39.63■■■■□ 3.93
VEGFA-207ENST00000413642 ZFYVE9O95405 1425 aa39.61■■■■□ 3.93
VEGFA-207ENST00000413642 RIMS2Q9UQ26 1411 aa39.61■■■■□ 3.93
VEGFA-207ENST00000413642 STRCP1A6NGW2 1772 aa39.61■■■■□ 3.93
VEGFA-207ENST00000413642 NUTM2DQ5VT03 806 aaPredicted RBP39.58■■■■□ 3.93
VEGFA-207ENST00000413642 BCANQ96GW7 911 aa39.58■■■■□ 3.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms