RNA–Protein interactions for RNA: ENST00000410011.5

LIMS2-208, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-208ENST00000410011 MAST1Q9Y2H9 1570 aa22.59■■□□□ 1.21
LIMS2-208ENST00000410011 E9PCH4 1651 aa22.58■■□□□ 1.21
LIMS2-208ENST00000410011 ST20-MTHFSA0A0A6YYL1 179 aa22.58■■□□□ 1.2
LIMS2-208ENST00000410011 CDC42BPBQ9Y5S2 1711 aa22.58■■□□□ 1.2
LIMS2-208ENST00000410011 TMC1Q8TDI8 760 aa22.57■■□□□ 1.2
LIMS2-208ENST00000410011 B4GALNT3Q6L9W6 998 aa22.57■■□□□ 1.2
LIMS2-208ENST00000410011 DCAF11Q8TEB1 546 aa22.56■■□□□ 1.2
LIMS2-208ENST00000410011 MYBBP1AQ9BQG0 1328 aaKnown RBP22.56■■□□□ 1.2
LIMS2-208ENST00000410011 POLR3GLQ9BT43 218 aa22.54■■□□□ 1.2
LIMS2-208ENST00000410011 GPRASP1Q5JY77 1395 aa22.54■■□□□ 1.2
LIMS2-208ENST00000410011 PRAG1Q86YV5 1406 aa22.54■■□□□ 1.2
LIMS2-208ENST00000410011 UNC13BO14795 1591 aa22.53■■□□□ 1.2
LIMS2-208ENST00000410011 TRPM1Q7Z4N2 1603 aa22.52■■□□□ 1.2
LIMS2-208ENST00000410011 LAMC1P11047 1609 aa22.51■■□□□ 1.19
LIMS2-208ENST00000410011 CCDC144AA2RUR9 1427 aa22.51■■□□□ 1.19
LIMS2-208ENST00000410011 KDM2AQ9Y2K7 1162 aa22.51■■□□□ 1.19
LIMS2-208ENST00000410011 WASHC2CQ9Y4E1 1318 aa22.49■■□□□ 1.19
LIMS2-208ENST00000410011 PLEKHH2Q8IVE3 1493 aa22.48■■□□□ 1.19
LIMS2-208ENST00000410011 ATP10AO60312 1499 aa22.48■■□□□ 1.19
LIMS2-208ENST00000410011 PLXNC1O60486 1568 aa22.48■■□□□ 1.19
LIMS2-208ENST00000410011 PLA2R1Q13018 1463 aa22.47■■□□□ 1.19
LIMS2-208ENST00000410011 INSRP06213 1382 aa22.47■■□□□ 1.19
LIMS2-208ENST00000410011 PARD3Q8TEW0 1356 aa22.47■■□□□ 1.19
LIMS2-208ENST00000410011 IQGAP3Q86VI3 1631 aa22.45■■□□□ 1.18
LIMS2-208ENST00000410011 SYCP2Q9BX26 1530 aa22.44■■□□□ 1.18
LIMS2-208ENST00000410011 NLRP13Q86W25 1043 aa22.44■■□□□ 1.18
LIMS2-208ENST00000410011 SHROOM2Q13796 1616 aa22.44■■□□□ 1.18
LIMS2-208ENST00000410011 ZMYM4Q5VZL5 1548 aa22.43■■□□□ 1.18
LIMS2-208ENST00000410011 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.43■■□□□ 1.18
LIMS2-208ENST00000410011 PER1O15534 1290 aaPredicted RBP22.42■■□□□ 1.18
LIMS2-208ENST00000410011 PRDM15P57071 1507 aaPredicted RBP22.42■■□□□ 1.18
LIMS2-208ENST00000410011 PDE3BQ13370 1112 aa22.42■■□□□ 1.18
LIMS2-208ENST00000410011 A2MP01023 1474 aa22.42■■□□□ 1.18
LIMS2-208ENST00000410011 MAGI2Q86UL8 1455 aa22.42■■□□□ 1.18
LIMS2-208ENST00000410011 ARHGAP5Q13017 1502 aa22.41■■□□□ 1.18
LIMS2-208ENST00000410011 EIF2AK4Q9P2K8 1649 aaKnown RBP22.41■■□□□ 1.18
LIMS2-208ENST00000410011 TTC37Q6PGP7 1564 aa22.41■■□□□ 1.18
LIMS2-208ENST00000410011 COL17A1Q9UMD9 1497 aaPredicted RBP22.4■■□□□ 1.18
LIMS2-208ENST00000410011 CCDC136Q96JN2 1154 aa22.4■■□□□ 1.18
LIMS2-208ENST00000410011 DUOX2Q9NRD8 1548 aa22.4■■□□□ 1.18
LIMS2-208ENST00000410011 ERICH6Q7L0X2 663 aa22.39■■□□□ 1.17
LIMS2-208ENST00000410011 CNGB1Q14028 1251 aaPredicted RBP22.38■■□□□ 1.17
LIMS2-208ENST00000410011 ERBINQ96RT1 1412 aa22.38■■□□□ 1.17
LIMS2-208ENST00000410011 ABCC2Q92887 1545 aa22.37■■□□□ 1.17
LIMS2-208ENST00000410011 TESK2Q96S53 571 aa22.36■■□□□ 1.17
LIMS2-208ENST00000410011 MYO5CQ9NQX4 1742 aa22.36■■□□□ 1.17
LIMS2-208ENST00000410011 MYT1LQ9UL68 1186 aa22.35■■□□□ 1.17
LIMS2-208ENST00000410011 NBPF1Q3BBV0 1214 aa22.35■■□□□ 1.17
LIMS2-208ENST00000410011 RRP1P56182 461 aaKnown RBP22.31■■□□□ 1.16
LIMS2-208ENST00000410011 CHD1O14646 1710 aa22.31■■□□□ 1.16
LIMS2-208ENST00000410011 PLCH2O75038 1416 aa22.31■■□□□ 1.16
LIMS2-208ENST00000410011 RGL3Q3MIN7 710 aa22.3■■□□□ 1.16
LIMS2-208ENST00000410011 STAC3Q96MF2 364 aa22.29■■□□□ 1.16
LIMS2-208ENST00000410011 TMF1P82094 1093 aa22.28■■□□□ 1.16
LIMS2-208ENST00000410011 RCAN3Q9UKA8 241 aa22.28■■□□□ 1.16
LIMS2-208ENST00000410011 DISP3Q9P2K9 1392 aa22.28■■□□□ 1.16
LIMS2-208ENST00000410011 BLMP54132 1417 aaPredicted RBP22.28■■□□□ 1.16
LIMS2-208ENST00000410011 RNF17Q9BXT8 1623 aaKnown RBP22.28■■□□□ 1.16
LIMS2-208ENST00000410011 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.26■■□□□ 1.15
LIMS2-208ENST00000410011 UHRF1BP1LA0JNW5 1464 aa22.25■■□□□ 1.15
LIMS2-208ENST00000410011 EFCAB2Q5VUJ9 269 aa22.24■■□□□ 1.15
LIMS2-208ENST00000410011 PANK3Q9H999 370 aa22.23■■□□□ 1.15
LIMS2-208ENST00000410011 NOP58Q9Y2X3 529 aaKnown RBP22.23■■□□□ 1.15
LIMS2-208ENST00000410011 ABCC1P33527 1531 aa22.22■■□□□ 1.15
LIMS2-208ENST00000410011 RTEL1-TNFRSF6BF6WH68 1400 aa22.22■■□□□ 1.15
LIMS2-208ENST00000410011 ARAP3Q8WWN8 1544 aa22.2■■□□□ 1.14
LIMS2-208ENST00000410011 TCERG1O14776 1098 aaKnown RBP22.18■■□□□ 1.14
LIMS2-208ENST00000410011 ANP32AP39687 249 aaKnown RBP22.18■■□□□ 1.14
LIMS2-208ENST00000410011 IPO9Q96P70 1041 aaKnown RBP22.18■■□□□ 1.14
LIMS2-208ENST00000410011 ERCC6L2Q5T890 1561 aa22.17■■□□□ 1.14
LIMS2-208ENST00000410011 PTPRTO14522 1441 aa22.17■■□□□ 1.14
LIMS2-208ENST00000410011 SCAPERQ9BY12 1400 aa22.17■■□□□ 1.14
LIMS2-208ENST00000410011 EXOC6Q8TAG9 804 aa22.17■■□□□ 1.14
LIMS2-208ENST00000410011 MADDQ8WXG6 1647 aa22.16■■□□□ 1.14
LIMS2-208ENST00000410011 TRPM2O94759 1503 aa22.16■■□□□ 1.14
LIMS2-208ENST00000410011 WDR7Q9Y4E6 1490 aa22.16■■□□□ 1.14
LIMS2-208ENST00000410011 SENP3-EIF4A1A0A087X0R7 540 aa22.15■■□□□ 1.14
LIMS2-208ENST00000410011 CC2D1BQ5T0F9 858 aaKnown RBP22.15■■□□□ 1.14
LIMS2-208ENST00000410011 ZCCHC11Q5TAX3 1644 aaKnown RBP22.15■■□□□ 1.14
LIMS2-208ENST00000410011 IQGAP1P46940 1657 aa22.15■■□□□ 1.14
LIMS2-208ENST00000410011 CDCA8Q53HL2 280 aa22.14■■□□□ 1.14
LIMS2-208ENST00000410011 TRAPPC8Q9Y2L5 1435 aa22.14■■□□□ 1.14
LIMS2-208ENST00000410011 NEURL4Q96JN8 1562 aa22.13■■□□□ 1.13
LIMS2-208ENST00000410011 MS4A1P11836 297 aa22.13■■□□□ 1.13
LIMS2-208ENST00000410011 DEPDC5O75140 1603 aa22.11■■□□□ 1.13
LIMS2-208ENST00000410011 CDCA7LQ96GN5 454 aa22.11■■□□□ 1.13
LIMS2-208ENST00000410011 BCL11AQ9H165 835 aa22.11■■□□□ 1.13
LIMS2-208ENST00000410011 SPHKAPQ2M3C7 1700 aa22.11■■□□□ 1.13
LIMS2-208ENST00000410011 SCAF11Q99590 1463 aaKnown RBP22.11■■□□□ 1.13
LIMS2-208ENST00000410011 NPC1L1Q9UHC9 1359 aa22.1■■□□□ 1.13
LIMS2-208ENST00000410011 CEP152O94986 1710 aa22.1■■□□□ 1.13
LIMS2-208ENST00000410011 SYNMO15061 1565 aa22.1■■□□□ 1.13
LIMS2-208ENST00000410011 CLASP1Q7Z460 1538 aa22.09■■□□□ 1.13
LIMS2-208ENST00000410011 SPAG9O60271 1321 aaKnown RBP22.08■■□□□ 1.13
LIMS2-208ENST00000410011 ZFYVE16Q7Z3T8 1539 aa22.08■■□□□ 1.13
LIMS2-208ENST00000410011 SLC24A1O60721 1099 aa22.08■■□□□ 1.12
LIMS2-208ENST00000410011 SALL2Q9Y467 1007 aaPredicted RBP22.08■■□□□ 1.12
LIMS2-208ENST00000410011 PAK3O75914 559 aaPredicted RBP22.07■■□□□ 1.12
LIMS2-208ENST00000410011 KNSTRNQ9Y448 316 aa22.07■■□□□ 1.12
LIMS2-208ENST00000410011 AMER1Q5JTC6 1135 aaPredicted RBP22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms