RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 CNTLNQ9NXG0 1405 aa34.13■■■■□ 3.05
PTCD3-203ENST00000409783 MROH1Q8NDA8 1641 aa34.13■■■■□ 3.05
PTCD3-203ENST00000409783 ITGAEP38570 1179 aa34.13■■■■□ 3.05
PTCD3-203ENST00000409783 MROH2AA6NES4 1674 aa34.12■■■■□ 3.05
PTCD3-203ENST00000409783 CLTCQ00610 1675 aaKnown RBP34.12■■■■□ 3.05
PTCD3-203ENST00000409783 C3P01024 1663 aa34.11■■■■□ 3.05
PTCD3-203ENST00000409783 FAM135AQ9P2D6 1515 aa34.08■■■■□ 3.05
PTCD3-203ENST00000409783 ESF1Q9H501 851 aaKnown RBP34.07■■■■□ 3.04
PTCD3-203ENST00000409783 DEPDC5O75140 1603 aa34.06■■■■□ 3.04
PTCD3-203ENST00000409783 CEBPAP49715 358 aaPredicted RBP34.06■■■■□ 3.04
PTCD3-203ENST00000409783 ANKRD50Q9ULJ7 1429 aa34.04■■■■□ 3.04
PTCD3-203ENST00000409783 KDM5DQ9BY66 1539 aa34.04■■■■□ 3.04
PTCD3-203ENST00000409783 ZMYM3Q14202 1370 aa34.02■■■■□ 3.04
PTCD3-203ENST00000409783 PRDM15P57071 1507 aaPredicted RBP34.02■■■■□ 3.04
PTCD3-203ENST00000409783 PLPPR3Q6T4P5 718 aa34.01■■■■□ 3.03
PTCD3-203ENST00000409783 ABCC3O15438 1527 aa33.99■■■■□ 3.03
PTCD3-203ENST00000409783 ZC3H13Q5T200 1668 aaKnown RBP33.98■■■■□ 3.03
PTCD3-203ENST00000409783 WASHC2CQ9Y4E1 1318 aa33.97■■■■□ 3.03
PTCD3-203ENST00000409783 CEP152O94986 1710 aa33.95■■■■□ 3.03
PTCD3-203ENST00000409783 VWDEQ8N2E2 1590 aa33.94■■■■□ 3.02
PTCD3-203ENST00000409783 SETD1BQ9UPS6 1966 aaKnown RBP33.92■■■■□ 3.02
PTCD3-203ENST00000409783 GCC2Q8IWJ2 1684 aa33.9■■■■□ 3.02
PTCD3-203ENST00000409783 NAIPQ13075 1403 aa33.89■■■■□ 3.02
PTCD3-203ENST00000409783 NPATQ14207 1427 aa33.89■■■■□ 3.02
PTCD3-203ENST00000409783 UNC13BO14795 1591 aa33.89■■■■□ 3.02
PTCD3-203ENST00000409783 CAMSAP1Q5T5Y3 1602 aa33.87■■■■□ 3.01
PTCD3-203ENST00000409783 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.87■■■■□ 3.018e-7■□□□□ 10.5
PTCD3-203ENST00000409783 PZPP20742 1482 aa33.87■■■■□ 3.01
PTCD3-203ENST00000409783 PREX1Q8TCU6 1659 aa33.87■■■■□ 3.01
PTCD3-203ENST00000409783 LMTK3Q96Q04 1460 aa33.86■■■■□ 3.01
PTCD3-203ENST00000409783 LMTK2Q8IWU2 1503 aa33.85■■■■□ 3.01
PTCD3-203ENST00000409783 HFM1A2PYH4 1435 aa33.85■■■■□ 3.01
PTCD3-203ENST00000409783 KANK1Q14678 1352 aa33.83■■■■□ 3.01
PTCD3-203ENST00000409783 FBXO31Q5XUX0 539 aaPredicted RBP33.79■■■■□ 3
PTCD3-203ENST00000409783 ARHGAP31Q2M1Z3 1444 aa33.79■■■■□ 3
PTCD3-203ENST00000409783 UHRF1BP1Q6BDS2 1440 aa33.74■■■□□ 2.99
PTCD3-203ENST00000409783 IQGAP3Q86VI3 1631 aa33.74■■■□□ 2.99
PTCD3-203ENST00000409783 SPATA31D1Q6ZQQ2 1576 aa33.73■■■□□ 2.99
PTCD3-203ENST00000409783 CFAP65Q6ZU64 1925 aaKnown RBP33.73■■■□□ 2.99
PTCD3-203ENST00000409783 EFCAB6Q5THR3 1501 aa33.73■■■□□ 2.99
PTCD3-203ENST00000409783 MYO3AQ8NEV4 1616 aa33.72■■■□□ 2.99
PTCD3-203ENST00000409783 TET3O43151 1660 aa33.71■■■□□ 2.99
PTCD3-203ENST00000409783 ERVK-7P63135 1459 aa33.71■■■□□ 2.99
PTCD3-203ENST00000409783 TNRQ92752 1358 aa33.7■■■□□ 2.98
PTCD3-203ENST00000409783 NUP155O75694 1391 aa33.68■■■□□ 2.98
PTCD3-203ENST00000409783 ZNF142P52746 1687 aaPredicted RBP33.68■■■□□ 2.98
PTCD3-203ENST00000409783 HSPA2P54652 639 aa33.65■■■□□ 2.98
PTCD3-203ENST00000409783 CEP170BQ9Y4F5 1589 aaPredicted RBP33.63■■■□□ 2.97
PTCD3-203ENST00000409783 RPRD2Q5VT52 1461 aaKnown RBP33.61■■■□□ 2.97
PTCD3-203ENST00000409783 E9PCH4 1651 aa33.61■■■□□ 2.97
PTCD3-203ENST00000409783 A2ML1A8K2U0 1454 aa33.59■■■□□ 2.97
PTCD3-203ENST00000409783 NOS1P29475 1434 aa33.58■■■□□ 2.97
PTCD3-203ENST00000409783 NLRP1Q9C000 1473 aa33.57■■■□□ 2.97
PTCD3-203ENST00000409783 SETD5Q9C0A6 1442 aa33.57■■■□□ 2.96
PTCD3-203ENST00000409783 SYNMO15061 1565 aa33.55■■■□□ 2.96
PTCD3-203ENST00000409783 STRCQ7RTU9 1775 aa33.49■■■□□ 2.95
PTCD3-203ENST00000409783 TRIM52Q96A61 297 aa33.49■■■□□ 2.95
PTCD3-203ENST00000409783 RAB3GAP2Q9H2M9 1393 aa33.47■■■□□ 2.95
PTCD3-203ENST00000409783 UGGT1Q9NYU2 1555 aa33.46■■■□□ 2.95
PTCD3-203ENST00000409783 PIK3C2BO00750 1634 aa33.44■■■□□ 2.94
PTCD3-203ENST00000409783 UBR1Q8IWV7 1749 aa33.44■■■□□ 2.94
PTCD3-203ENST00000409783 PLA2R1Q13018 1463 aa33.43■■■□□ 2.94
PTCD3-203ENST00000409783 IDI1Q13907 227 aa33.41■■■□□ 2.94
PTCD3-203ENST00000409783 SPHKAPQ2M3C7 1700 aa33.39■■■□□ 2.94
PTCD3-203ENST00000409783 PTPRTO14522 1441 aa33.38■■■□□ 2.93
PTCD3-203ENST00000409783 SLC52A1Q9NWF4 448 aa33.38■■■□□ 2.93
PTCD3-203ENST00000409783 KDM5AP29375 1690 aaKnown RBP33.38■■■□□ 2.93
PTCD3-203ENST00000409783 ACIN1Q9UKV3 1341 aaKnown RBP33.37■■■□□ 2.93
PTCD3-203ENST00000409783 SLC4A1APQ9BWU0 796 aaKnown RBP33.37■■■□□ 2.93
PTCD3-203ENST00000409783 PKD2Q13563 968 aa33.36■■■□□ 2.93
PTCD3-203ENST00000409783 THEMISQ8N1K5 641 aaPredicted RBP33.36■■■□□ 2.93
PTCD3-203ENST00000409783 HRCP23327 699 aa33.33■■■□□ 2.93
PTCD3-203ENST00000409783 MPHOSPH9Q99550 1183 aa33.31■■■□□ 2.92
PTCD3-203ENST00000409783 ADGRB3O60242 1522 aa33.31■■■□□ 2.92
PTCD3-203ENST00000409783 NCKAP5LQ9HCH0 1330 aa33.29■■■□□ 2.92
PTCD3-203ENST00000409783 POLR1AO95602 1720 aaPredicted RBP33.29■■■□□ 2.92
PTCD3-203ENST00000409783 ARHGAP23Q9P227 1491 aa33.29■■■□□ 2.92
PTCD3-203ENST00000409783 TRPM2O94759 1503 aa33.28■■■□□ 2.92
PTCD3-203ENST00000409783 MYO5BQ9ULV0 1848 aa33.28■■■□□ 2.92
PTCD3-203ENST00000409783 TMEM131LA2VDJ0 1609 aa33.28■■■□□ 2.92
PTCD3-203ENST00000409783 SLIT1O75093 1534 aa33.28■■■□□ 2.92
PTCD3-203ENST00000409783 NEURL4Q96JN8 1562 aa33.26■■■□□ 2.92
PTCD3-203ENST00000409783 TRIM26Q12899 539 aaPredicted RBP33.26■■■□□ 2.91
PTCD3-203ENST00000409783 CLTCL1P53675 1640 aa33.24■■■□□ 2.91
PTCD3-203ENST00000409783 FOXD1Q16676 465 aa33.23■■■□□ 2.91
PTCD3-203ENST00000409783 DMRT2Q9Y5R5 561 aa33.22■■■□□ 2.91
PTCD3-203ENST00000409783 TMEM2Q9UHN6 1383 aa33.21■■■□□ 2.91
PTCD3-203ENST00000409783 ANKLE2Q86XL3 938 aa33.21■■■□□ 2.91
PTCD3-203ENST00000409783 STAG3Q9UJ98 1225 aa33.21■■■□□ 2.91
PTCD3-203ENST00000409783 MED14O60244 1454 aa33.18■■■□□ 2.9
PTCD3-203ENST00000409783 LTKP29376 864 aa33.16■■■□□ 2.9
PTCD3-203ENST00000409783 SCAF11Q99590 1463 aaKnown RBP33.15■■■□□ 2.9
PTCD3-203ENST00000409783 ZFYVE9O95405 1425 aa33.12■■■□□ 2.89
PTCD3-203ENST00000409783 TXNDC2Q86VQ3 553 aa33.11■■■□□ 2.89
PTCD3-203ENST00000409783 KIF1BO60333 1816 aa33.11■■■□□ 2.89
PTCD3-203ENST00000409783 NPHP4O75161 1426 aaPredicted RBP33.11■■■□□ 2.89
PTCD3-203ENST00000409783 CHGAP10645 457 aaKnown RBP33.1■■■□□ 2.89
PTCD3-203ENST00000409783 IQGAP1P46940 1657 aa33.1■■■□□ 2.89
PTCD3-203ENST00000409783 RIMS2Q9UQ26 1411 aa33.07■■■□□ 2.88
PTCD3-203ENST00000409783 EID1Q9Y6B2 187 aa33.06■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms