RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 NISCHQ9Y2I1 1504 aa54.24■■■■■ 6.27
PTCD3-203ENST00000409783 CCDC180Q9P1Z9 1646 aa48.14■■■■■ 5.3
PTCD3-203ENST00000409783 ABCC9O60706 1549 aa46.87■■■■■ 5.09
PTCD3-203ENST00000409783 ZCCHC6Q5VYS8 1495 aaKnown RBP45.23■■■■■ 4.83
PTCD3-203ENST00000409783 NACADO15069 1562 aa45.19■■■■■ 4.82
PTCD3-203ENST00000409783 RB1CC1Q8TDY2 1594 aa45.17■■■■■ 4.82
PTCD3-203ENST00000409783 DCAF8L2P0C7V8 631 aa45.09■■■■■ 4.81
PTCD3-203ENST00000409783 MYO15BQ96JP2 1530 aa45.01■■■■■ 4.8
PTCD3-203ENST00000409783 DCAF1Q9Y4B6 1507 aa44.91■■■■■ 4.78
PTCD3-203ENST00000409783 UNC13AQ9UPW8 1703 aa44.26■■■■■ 4.68
PTCD3-203ENST00000409783 SCRIBQ14160 1630 aa43.91■■■■■ 4.62
PTCD3-203ENST00000409783 BICRAQ9NZM4 1560 aa43.9■■■■■ 4.62
PTCD3-203ENST00000409783 PABPN1Q86U42 306 aaKnown RBP eCLIP43.82■■■■■ 4.61
PTCD3-203ENST00000409783 SHROOM4Q9ULL8 1493 aa43.37■■■■■ 4.53
PTCD3-203ENST00000409783 DNAJC5BQ9UF47 199 aa42.91■■■■■ 4.46
PTCD3-203ENST00000409783 EIF4G1Q04637 1599 aaKnown RBP42.66■■■■■ 4.42
PTCD3-203ENST00000409783 CC2D2AQ9P2K1 1620 aa42.44■■■■■ 4.38
PTCD3-203ENST00000409783 CECR2Q9BXF3 1484 aa42.25■■■■■ 4.35
PTCD3-203ENST00000409783 SMARCA4P51532 1647 aa42.06■■■■■ 4.32
PTCD3-203ENST00000409783 BAZ1AQ9NRL2 1556 aaPredicted RBP41.99■■■■■ 4.31
PTCD3-203ENST00000409783 MROH2BQ7Z745 1585 aa41.82■■■■■ 4.29
PTCD3-203ENST00000409783 ATAD2BQ9ULI0 1458 aa41.76■■■■■ 4.28
PTCD3-203ENST00000409783 NCAPD3P42695 1498 aa41.72■■■■■ 4.27
PTCD3-203ENST00000409783 SMARCA2P51531 1590 aa41.68■■■■■ 4.26
PTCD3-203ENST00000409783 PEG3Q9GZU2 1588 aa41.66■■■■■ 4.26
PTCD3-203ENST00000409783 HMGXB3Q12766 1538 aa41.52■■■■■ 4.24
PTCD3-203ENST00000409783 RSF1Q96T23 1441 aaPredicted RBP41.4■■■■■ 4.22
PTCD3-203ENST00000409783 BAZ1BQ9UIG0 1483 aaKnown RBP41.38■■■■■ 4.21
PTCD3-203ENST00000409783 WIZO95785 1651 aa41.38■■■■■ 4.21
PTCD3-203ENST00000409783 TOP2AP11388 1531 aaKnown RBP40.93■■■■■ 4.14
PTCD3-203ENST00000409783 NESP48681 1621 aa40.66■■■■■ 4.1
PTCD3-203ENST00000409783 LAMC3Q9Y6N6 1575 aa40.56■■■■■ 4.08
PTCD3-203ENST00000409783 CADPSQ9ULU8 1353 aa40.48■■■■■ 4.07
PTCD3-203ENST00000409783 CCDC88BA6NC98 1476 aa40.45■■■■■ 4.07
PTCD3-203ENST00000409783 SUPT5HO00267 1087 aaKnown RBP40.4■■■■■ 4.06
PTCD3-203ENST00000409783 ERCC6Q03468 1493 aa40.32■■■■■ 4.04
PTCD3-203ENST00000409783 CFTRP13569 1480 aa40.31■■■■■ 4.04
PTCD3-203ENST00000409783 PDS5BQ9NTI5 1447 aa40.23■■■■■ 4.03
PTCD3-203ENST00000409783 KIF21AQ7Z4S6 1674 aa40.2■■■■■ 4.03
PTCD3-203ENST00000409783 PRDM2Q13029 1718 aa40.05■■■■■ 4
PTCD3-203ENST00000409783 THOC2Q8NI27 1593 aaKnown RBP40.02■■■■■ 4
PTCD3-203ENST00000409783 FANCD2Q9BXW9 1451 aa40.01■■■■■ 4
PTCD3-203ENST00000409783 CEP164Q9UPV0 1460 aa39.93■■■■□ 3.98
PTCD3-203ENST00000409783 CUX2O14529 1486 aa39.88■■■■□ 3.98
PTCD3-203ENST00000409783 MRC2Q9UBG0 1479 aa39.84■■■■□ 3.97
PTCD3-203ENST00000409783 WDR62O43379 1518 aa39.74■■■■□ 3.95
PTCD3-203ENST00000409783 URB2Q14146 1524 aaKnown RBP39.65■■■■□ 3.94
PTCD3-203ENST00000409783 TOPBP1Q92547 1522 aa39.42■■■■□ 3.9
PTCD3-203ENST00000409783 DNMBPQ6XZF7 1577 aa39.38■■■■□ 3.9
PTCD3-203ENST00000409783 ABCC8Q09428 1581 aa39.38■■■■□ 3.89
PTCD3-203ENST00000409783 CUX1P39880 1505 aa39.22■■■■□ 3.87
PTCD3-203ENST00000409783 POLA1P09884 1462 aaPredicted RBP39.1■■■■□ 3.85
PTCD3-203ENST00000409783 IFT140Q96RY7 1462 aa39.09■■■■□ 3.85
PTCD3-203ENST00000409783 FGD5Q6ZNL6 1462 aa39.02■■■■□ 3.84
PTCD3-203ENST00000409783 TARBP1Q13395 1621 aaKnown RBP39.01■■■■□ 3.84
PTCD3-203ENST00000409783 WRNQ14191 1432 aaPredicted RBP eCLIP38.98■■■■□ 3.83
PTCD3-203ENST00000409783 SYNJ1O43426 1573 aa38.94■■■■□ 3.82
PTCD3-203ENST00000409783 ZNF608Q9ULD9 1512 aaPredicted RBP38.94■■■■□ 3.82
PTCD3-203ENST00000409783 BIVM-ERCC5R4GMW8 1640 aa38.93■■■■□ 3.82
PTCD3-203ENST00000409783 TOP2BQ02880 1626 aa38.92■■■■□ 3.82
PTCD3-203ENST00000409783 RAD54L2Q9Y4B4 1467 aa38.92■■■■□ 3.82
PTCD3-203ENST00000409783 SOGA1O94964 1423 aa38.9■■■■□ 3.82
PTCD3-203ENST00000409783 EIF4G3O43432 1585 aaKnown RBP38.78■■■■□ 3.8
PTCD3-203ENST00000409783 WDR97A6NE52 1622 aa38.75■■■■□ 3.79
PTCD3-203ENST00000409783 AQRO60306 1485 aaKnown RBP eCLIP38.73■■■■□ 3.791e-7■■■■□ 20.9
PTCD3-203ENST00000409783 TDRD9Q8NDG6 1382 aaKnown RBP38.67■■■■□ 3.78
PTCD3-203ENST00000409783 ABCA10Q8WWZ4 1543 aa38.66■■■■□ 3.78
PTCD3-203ENST00000409783 ABCA5Q8WWZ7 1642 aa38.52■■■■□ 3.76
PTCD3-203ENST00000409783 GAPVD1Q14C86 1478 aa38.47■■■■□ 3.75
PTCD3-203ENST00000409783 GRIN2BQ13224 1484 aa38.43■■■■□ 3.74
PTCD3-203ENST00000409783 DNAJC5Q9H3Z4 198 aa38.43■■■■□ 3.74
PTCD3-203ENST00000409783 PBRM1Q86U86 1689 aa38.41■■■■□ 3.74
PTCD3-203ENST00000409783 SNAPC4Q5SXM2 1469 aa38.36■■■■□ 3.73
PTCD3-203ENST00000409783 MAGI1Q96QZ7 1491 aaPredicted RBP38.31■■■■□ 3.72
PTCD3-203ENST00000409783 CHD1O14646 1710 aa38.28■■■■□ 3.72
PTCD3-203ENST00000409783 OSCARQ8IYS5 282 aa38.23■■■■□ 3.71
PTCD3-203ENST00000409783 ERICH3Q5RHP9 1530 aa38.19■■■■□ 3.7
PTCD3-203ENST00000409783 SYNJ2O15056 1496 aa38.16■■■■□ 3.7
PTCD3-203ENST00000409783 TRIM41Q8WV44 630 aa38.13■■■■□ 3.69
PTCD3-203ENST00000409783 KIF27Q86VH2 1401 aa38.12■■■■□ 3.69
PTCD3-203ENST00000409783 FBLN2P98095 1184 aa38.12■■■■□ 3.69
PTCD3-203ENST00000409783 ADAMTS12P58397 1594 aa38.11■■■■□ 3.69
PTCD3-203ENST00000409783 CHMP7Q8WUX9 453 aaPredicted RBP38.07■■■■□ 3.68
PTCD3-203ENST00000409783 FHAD1B1AJZ9 1412 aa38.03■■■■□ 3.68
PTCD3-203ENST00000409783 IGF1RP08069 1367 aa38.01■■■■□ 3.68
PTCD3-203ENST00000409783 GRIN2AQ12879 1464 aa37.95■■■■□ 3.67
PTCD3-203ENST00000409783 RUSC2Q8N2Y8 1516 aa37.93■■■■□ 3.66
PTCD3-203ENST00000409783 CHIC1Q5VXU3 224 aa37.89■■■■□ 3.66
PTCD3-203ENST00000409783 CUL7Q14999 1698 aa37.88■■■■□ 3.65
PTCD3-203ENST00000409783 CLASP1Q7Z460 1538 aa37.87■■■■□ 3.65
PTCD3-203ENST00000409783 NUP160Q12769 1436 aa37.8■■■■□ 3.64
PTCD3-203ENST00000409783 CEP170Q5SW79 1584 aa37.79■■■■□ 3.64
PTCD3-203ENST00000409783 CARMIL1Q5VZK9 1371 aa37.75■■■■□ 3.63
PTCD3-203ENST00000409783 ARHGEF11O15085 1522 aa37.66■■■■□ 3.62
PTCD3-203ENST00000409783 RIMBP3CA6NJZ7 1639 aa37.66■■■■□ 3.62
PTCD3-203ENST00000409783 RIMBP3BA6NNM3 1639 aa37.66■■■■□ 3.62
PTCD3-203ENST00000409783 RIMBP3Q9UFD9 1639 aa37.66■■■■□ 3.62
PTCD3-203ENST00000409783 RAPGEF2Q9Y4G8 1499 aa37.55■■■■□ 3.6
PTCD3-203ENST00000409783 EEA1Q15075 1411 aa37.53■■■■□ 3.6
PTCD3-203ENST00000409783 SHROOM2Q13796 1616 aa37.52■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms