RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 CCDC144AA2RUR9 1427 aa28.12■■■□□ 2.09
USP39-204ENST00000409766 CNTLNQ9NXG0 1405 aa28.12■■■□□ 2.09
USP39-204ENST00000409766 NPM1P06748 294 aaKnown RBP eCLIP28.11■■■□□ 2.09
USP39-204ENST00000409766 KDM5CP41229 1560 aa28.09■■■□□ 2.09
USP39-204ENST00000409766 USP47Q96K76 1375 aa28.08■■■□□ 2.09
USP39-204ENST00000409766 INO80Q9ULG1 1556 aaPredicted RBP28.08■■■□□ 2.09
USP39-204ENST00000409766 ATP10AO60312 1499 aa28.07■■■□□ 2.08
USP39-204ENST00000409766 ADGRL1O94910 1474 aa28.06■■■□□ 2.08
USP39-204ENST00000409766 KIF7Q2M1P5 1343 aa28.06■■■□□ 2.08
USP39-204ENST00000409766 DCAF11Q8TEB1 546 aa28.06■■■□□ 2.08
USP39-204ENST00000409766 ATP7AQ04656 1500 aa28.05■■■□□ 2.08
USP39-204ENST00000409766 SCAPERQ9BY12 1400 aa28.03■■■□□ 2.08
USP39-204ENST00000409766 RIMBP3CA6NJZ7 1639 aa28.03■■■□□ 2.08
USP39-204ENST00000409766 RIMBP3BA6NNM3 1639 aa28.03■■■□□ 2.08
USP39-204ENST00000409766 RIMBP3Q9UFD9 1639 aa28.03■■■□□ 2.08
USP39-204ENST00000409766 KDM2AQ9Y2K7 1162 aa28.02■■■□□ 2.08
USP39-204ENST00000409766 DEPDC5O75140 1603 aa28.02■■■□□ 2.08
USP39-204ENST00000409766 BCORL1Q5H9F3 1711 aa28.02■■■□□ 2.08
USP39-204ENST00000409766 CARD11Q9BXL7 1154 aa27.97■■■□□ 2.07
USP39-204ENST00000409766 E9PCH4 1651 aa27.96■■■□□ 2.07
USP39-204ENST00000409766 PRAG1Q86YV5 1406 aa27.96■■■□□ 2.07
USP39-204ENST00000409766 A2MP01023 1474 aa27.96■■■□□ 2.07
USP39-204ENST00000409766 CYB5RLQ6IPT4 315 aa27.95■■■□□ 2.06
USP39-204ENST00000409766 TRPM1Q7Z4N2 1603 aa27.95■■■□□ 2.06
USP39-204ENST00000409766 ARID4BQ4LE39 1312 aaPredicted RBP27.93■■■□□ 2.06
USP39-204ENST00000409766 EIF2AK4Q9P2K8 1649 aaKnown RBP27.93■■■□□ 2.06
USP39-204ENST00000409766 RGL3Q3MIN7 710 aa27.92■■■□□ 2.06
USP39-204ENST00000409766 VWDEQ8N2E2 1590 aa27.91■■■□□ 2.06
USP39-204ENST00000409766 KIDINS220Q9ULH0 1771 aa27.91■■■□□ 2.06
USP39-204ENST00000409766 CD109Q6YHK3 1445 aa27.9■■■□□ 2.06
USP39-204ENST00000409766 DHX29Q7Z478 1369 aaKnown RBP27.9■■■□□ 2.06
USP39-204ENST00000409766 CFAP74Q9C0B2 1584 aa27.9■■■□□ 2.06
USP39-204ENST00000409766 ROCK2O75116 1388 aaKnown RBP27.9■■■□□ 2.06
USP39-204ENST00000409766 TET3O43151 1660 aa27.89■■■□□ 2.06
USP39-204ENST00000409766 ZNF518AQ6AHZ1 1483 aa27.89■■■□□ 2.06
USP39-204ENST00000409766 PRKRIP1Q9H875 184 aaPredicted RBP27.88■■■□□ 2.05
USP39-204ENST00000409766 TRPM2O94759 1503 aa27.87■■■□□ 2.05
USP39-204ENST00000409766 SPHKAPQ2M3C7 1700 aa27.86■■■□□ 2.05
USP39-204ENST00000409766 MYT1LQ9UL68 1186 aa27.85■■■□□ 2.05
USP39-204ENST00000409766 PRDM15P57071 1507 aaPredicted RBP27.85■■■□□ 2.05
USP39-204ENST00000409766 PTPRTO14522 1441 aa27.85■■■□□ 2.05
USP39-204ENST00000409766 MROH1Q8NDA8 1641 aa27.85■■■□□ 2.05
USP39-204ENST00000409766 KANK1Q14678 1352 aa27.84■■■□□ 2.05
USP39-204ENST00000409766 GPRASP1Q5JY77 1395 aa27.84■■■□□ 2.05
USP39-204ENST00000409766 ST20-MTHFSA0A0A6YYL1 179 aa27.84■■■□□ 2.05
USP39-204ENST00000409766 KIF3BO15066 747 aa27.84■■■□□ 2.05
USP39-204ENST00000409766 LAMC1P11047 1609 aa27.83■■■□□ 2.05
USP39-204ENST00000409766 POGZQ7Z3K3 1410 aa27.81■■■□□ 2.04
USP39-204ENST00000409766 CEP152O94986 1710 aa27.8■■■□□ 2.04
USP39-204ENST00000409766 NBPF1Q3BBV0 1214 aa27.79■■■□□ 2.04
USP39-204ENST00000409766 CLTCL1P53675 1640 aa27.77■■■□□ 2.04
USP39-204ENST00000409766 MLH3Q9UHC1 1453 aa27.76■■■□□ 2.03
USP39-204ENST00000409766 CCDC184Q52MB2 194 aa27.75■■■□□ 2.03
USP39-204ENST00000409766 POLR3GLQ9BT43 218 aa27.75■■■□□ 2.03
USP39-204ENST00000409766 HECW2Q9P2P5 1572 aa27.73■■■□□ 2.03
USP39-204ENST00000409766 NEO1Q92859 1461 aa27.72■■■□□ 2.03
USP39-204ENST00000409766 RNF17Q9BXT8 1623 aaKnown RBP27.72■■■□□ 2.03
USP39-204ENST00000409766 EFCAB6Q5THR3 1501 aa27.71■■■□□ 2.03
USP39-204ENST00000409766 MADDQ8WXG6 1647 aa27.7■■■□□ 2.02
USP39-204ENST00000409766 MAP3K4Q9Y6R4 1608 aa27.69■■■□□ 2.02
USP39-204ENST00000409766 LMTK2Q8IWU2 1503 aa27.69■■■□□ 2.02
USP39-204ENST00000409766 GLI2P10070 1586 aa27.69■■■□□ 2.02
USP39-204ENST00000409766 FRMPD1Q5SYB0 1578 aa27.69■■■□□ 2.02
USP39-204ENST00000409766 NEURL4Q96JN8 1562 aa27.68■■■□□ 2.02
USP39-204ENST00000409766 SUPT16HQ9Y5B9 1047 aaKnown RBP27.68■■■□□ 2.02
USP39-204ENST00000409766 STAC3Q96MF2 364 aa27.67■■■□□ 2.02
USP39-204ENST00000409766 PPRC1Q5VV67 1664 aaKnown RBP27.66■■■□□ 2.02
USP39-204ENST00000409766 MRS2Q9HD23 443 aa27.66■■■□□ 2.02
USP39-204ENST00000409766 HNRNPUQ00839 825 aaKnown RBP eCLIP27.65■■■□□ 2.02
USP39-204ENST00000409766 ABCA6Q8N139 1617 aa27.65■■■□□ 2.02
USP39-204ENST00000409766 TESK2Q96S53 571 aa27.62■■■□□ 2.01
USP39-204ENST00000409766 DIP2BQ9P265 1576 aa27.61■■■□□ 2.01
USP39-204ENST00000409766 COL17A1Q9UMD9 1497 aaPredicted RBP27.6■■■□□ 2.01
USP39-204ENST00000409766 UGGT1Q9NYU2 1555 aa27.59■■■□□ 2.01
USP39-204ENST00000409766 KIF1BO60333 1816 aa27.58■■■□□ 2.01
USP39-204ENST00000409766 RAPGEF3O95398 923 aa27.58■■■□□ 2.01
USP39-204ENST00000409766 IQGAP1P46940 1657 aa27.57■■■□□ 2
USP39-204ENST00000409766 RICTORQ6R327 1708 aa27.57■■■□□ 2
USP39-204ENST00000409766 FAM9BQ8IZU0 186 aa27.56■■■□□ 2
USP39-204ENST00000409766 FAM69CQ0P6D2 419 aa27.55■■■□□ 2
USP39-204ENST00000409766 DISP3Q9P2K9 1392 aa27.54■■■□□ 2
USP39-204ENST00000409766 KIAA1210Q9ULL0 1709 aa27.54■■■□□ 2
USP39-204ENST00000409766 DIP2CQ9Y2E4 1556 aa27.53■■■□□ 2
USP39-204ENST00000409766 KTN1Q86UP2 1357 aaKnown RBP27.51■■□□□ 1.99
USP39-204ENST00000409766 NPATQ14207 1427 aa27.51■■□□□ 1.99
USP39-204ENST00000409766 GGT6Q6P531 493 aa27.51■■□□□ 1.99
USP39-204ENST00000409766 IFT172Q9UG01 1749 aa27.51■■□□□ 1.99
USP39-204ENST00000409766 MYOM2P54296 1465 aa27.51■■□□□ 1.99
USP39-204ENST00000409766 CNGB1Q14028 1251 aaPredicted RBP27.5■■□□□ 1.99
USP39-204ENST00000409766 MROH2AA6NES4 1674 aa27.5■■□□□ 1.99
USP39-204ENST00000409766 ABCC3O15438 1527 aa27.49■■□□□ 1.99
USP39-204ENST00000409766 TMF1P82094 1093 aa27.48■■□□□ 1.99
USP39-204ENST00000409766 SCAF11Q99590 1463 aaKnown RBP27.48■■□□□ 1.99
USP39-204ENST00000409766 ADGRB3O60242 1522 aa27.45■■□□□ 1.99
USP39-204ENST00000409766 RALBP1Q15311 655 aa27.45■■□□□ 1.99
USP39-204ENST00000409766 CFAP65Q6ZU64 1925 aaKnown RBP27.45■■□□□ 1.98
USP39-204ENST00000409766 WASHC2CQ9Y4E1 1318 aa27.45■■□□□ 1.98
USP39-204ENST00000409766 PER1O15534 1290 aaPredicted RBP27.45■■□□□ 1.98
USP39-204ENST00000409766 CAMSAP1Q5T5Y3 1602 aa27.44■■□□□ 1.98
USP39-204ENST00000409766 ZBED9Q6R2W3 1325 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms