RNA–Protein interactions for RNA: ENST00000405240.5

RTN4-209, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,061 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-209ENST00000405240 USP47Q96K76 1375 aa5.36□□□□□ -1.55
RTN4-209ENST00000405240 PLEKHH2Q8IVE3 1493 aa5.36□□□□□ -1.55
RTN4-209ENST00000405240 RSPH4AQ5TD94 716 aa5.36□□□□□ -1.55
RTN4-209ENST00000405240 DUOX2Q9NRD8 1548 aa5.36□□□□□ -1.55
RTN4-209ENST00000405240 RNF123Q5XPI4 1314 aa5.36□□□□□ -1.55
RTN4-209ENST00000405240 ERCC6L2Q5T890 1561 aa5.36□□□□□ -1.55
RTN4-209ENST00000405240 ABCC1P33527 1531 aa5.36□□□□□ -1.55
RTN4-209ENST00000405240 KTN1Q86UP2 1357 aaKnown RBP5.36□□□□□ -1.55
RTN4-209ENST00000405240 SPHKAPQ2M3C7 1700 aa5.36□□□□□ -1.55
RTN4-209ENST00000405240 SMG6Q86US8 1419 aaKnown RBP5.36□□□□□ -1.55
RTN4-209ENST00000405240 PRAG1Q86YV5 1406 aa5.36□□□□□ -1.55
RTN4-209ENST00000405240 VWDEQ8N2E2 1590 aa5.35□□□□□ -1.55
RTN4-209ENST00000405240 KIAA1210Q9ULL0 1709 aa5.35□□□□□ -1.55
RTN4-209ENST00000405240 PLEKHD1A6NEE1 506 aa5.35□□□□□ -1.55
RTN4-209ENST00000405240 LRPPRCP42704 1394 aaKnown RBP5.35□□□□□ -1.55
RTN4-209ENST00000405240 KIF15Q9NS87 1388 aa5.35□□□□□ -1.55
RTN4-209ENST00000405240 ERBINQ96RT1 1412 aa5.35□□□□□ -1.55
RTN4-209ENST00000405240 PKD2Q13563 968 aa5.35□□□□□ -1.55
RTN4-209ENST00000405240 INSRP06213 1382 aa5.35□□□□□ -1.55
RTN4-209ENST00000405240 ARID3CA6NKF2 412 aa5.35□□□□□ -1.55
RTN4-209ENST00000405240 ABCA9Q8IUA7 1624 aa5.34□□□□□ -1.55
RTN4-209ENST00000405240 MADDQ8WXG6 1647 aa5.34□□□□□ -1.55
RTN4-209ENST00000405240 IFT172Q9UG01 1749 aa5.34□□□□□ -1.55
RTN4-209ENST00000405240 A2MP01023 1474 aa5.34□□□□□ -1.55
RTN4-209ENST00000405240 NUP155O75694 1391 aa5.34□□□□□ -1.55
RTN4-209ENST00000405240 INO80Q9ULG1 1556 aaPredicted RBP5.34□□□□□ -1.56
RTN4-209ENST00000405240 COL17A1Q9UMD9 1497 aaPredicted RBP5.33□□□□□ -1.56
RTN4-209ENST00000405240 PLCH2O75038 1416 aa5.33□□□□□ -1.56
RTN4-209ENST00000405240 HNRNPUQ00839 825 aaKnown RBP eCLIP5.33□□□□□ -1.563e-6■□□□□ 10
RTN4-209ENST00000405240 TET3O43151 1660 aa5.33□□□□□ -1.56
RTN4-209ENST00000405240 ARHGAP5Q13017 1502 aa5.33□□□□□ -1.56
RTN4-209ENST00000405240 TRPM2O94759 1503 aa5.32□□□□□ -1.56
RTN4-209ENST00000405240 MYOM1P52179 1685 aa5.32□□□□□ -1.56
RTN4-209ENST00000405240 RTEL1-TNFRSF6BF6WH68 1400 aa5.32□□□□□ -1.56
RTN4-209ENST00000405240 ZFYVE16Q7Z3T8 1539 aa5.32□□□□□ -1.56
RTN4-209ENST00000405240 NEFLP07196 543 aa5.32□□□□□ -1.56
RTN4-209ENST00000405240 PARD3Q8TEW0 1356 aa5.32□□□□□ -1.56
RTN4-209ENST00000405240 MROH1Q8NDA8 1641 aa5.31□□□□□ -1.56
RTN4-209ENST00000405240 PTPRTO14522 1441 aa5.31□□□□□ -1.56
RTN4-209ENST00000405240 RBM19Q9Y4C8 960 aaKnown RBP5.31□□□□□ -1.56
RTN4-209ENST00000405240 BRD4O60885 1362 aaPredicted RBP5.31□□□□□ -1.56
RTN4-209ENST00000405240 WDR7Q9Y4E6 1490 aa5.31□□□□□ -1.56
RTN4-209ENST00000405240 PNISRQ8TF01 805 aaKnown RBP5.31□□□□□ -1.56
RTN4-209ENST00000405240 HNRNPMP52272 730 aaKnown RBP eCLIP5.31□□□□□ -1.567e-7■■■■□ 22.8
RTN4-209ENST00000405240 MYO3AQ8NEV4 1616 aa5.31□□□□□ -1.56
RTN4-209ENST00000405240 FANCIQ9NVI1 1328 aa5.3□□□□□ -1.56
RTN4-209ENST00000405240 PPP4R2Q9NY27 417 aa5.3□□□□□ -1.56
RTN4-209ENST00000405240 CLTCL1P53675 1640 aa5.3□□□□□ -1.56
RTN4-209ENST00000405240 TSPY4P0CV99 314 aa5.3□□□□□ -1.56
RTN4-209ENST00000405240 TSPY10P0CW01 314 aa5.3□□□□□ -1.56
RTN4-209ENST00000405240 ANP32EQ9BTT0 268 aa5.3□□□□□ -1.56
RTN4-209ENST00000405240 MRS2Q9HD23 443 aa5.3□□□□□ -1.56
RTN4-209ENST00000405240 SYNMO15061 1565 aa5.3□□□□□ -1.56
RTN4-209ENST00000405240 BCANQ96GW7 911 aa5.29□□□□□ -1.56
RTN4-209ENST00000405240 ZNF777Q9ULD5 760 aaPredicted RBP5.29□□□□□ -1.56
RTN4-209ENST00000405240 CCDC144AA2RUR9 1427 aa5.29□□□□□ -1.56
RTN4-209ENST00000405240 SCAPERQ9BY12 1400 aa5.29□□□□□ -1.56
RTN4-209ENST00000405240 WASHC2CQ9Y4E1 1318 aa5.29□□□□□ -1.56
RTN4-209ENST00000405240 BLMP54132 1417 aaPredicted RBP5.29□□□□□ -1.56
RTN4-209ENST00000405240 PER1O15534 1290 aaPredicted RBP5.29□□□□□ -1.56
RTN4-209ENST00000405240 ZC3H13Q5T200 1668 aaKnown RBP5.29□□□□□ -1.56
RTN4-209ENST00000405240 RALBP1Q15311 655 aa5.29□□□□□ -1.56
RTN4-209ENST00000405240 LMTK2Q8IWU2 1503 aa5.28□□□□□ -1.56
RTN4-209ENST00000405240 TESK2Q96S53 571 aa5.28□□□□□ -1.56
RTN4-209ENST00000405240 MYBBP1AQ9BQG0 1328 aaKnown RBP5.28□□□□□ -1.56
RTN4-209ENST00000405240 FBLN2P98095 1184 aa5.28□□□□□ -1.56
RTN4-209ENST00000405240 NUDCQ9Y266 331 aa5.28□□□□□ -1.56
RTN4-209ENST00000405240 NRXN1Q9ULB1 1477 aa5.28□□□□□ -1.56
RTN4-209ENST00000405240 KIDINS220Q9ULH0 1771 aa5.27□□□□□ -1.57
RTN4-209ENST00000405240 KIF1BO60333 1816 aa5.27□□□□□ -1.57
RTN4-209ENST00000405240 TRAPPC8Q9Y2L5 1435 aa5.27□□□□□ -1.57
RTN4-209ENST00000405240 ST20-MTHFSA0A0A6YYL1 179 aa5.27□□□□□ -1.57
RTN4-209ENST00000405240 CARD11Q9BXL7 1154 aa5.27□□□□□ -1.57
RTN4-209ENST00000405240 MROH2AA6NES4 1674 aa5.27□□□□□ -1.57
RTN4-209ENST00000405240 ATP7AQ04656 1500 aa5.27□□□□□ -1.57
RTN4-209ENST00000405240 MAP3K4Q9Y6R4 1608 aa5.27□□□□□ -1.57
RTN4-209ENST00000405240 MYOM2P54296 1465 aa5.27□□□□□ -1.57
RTN4-209ENST00000405240 MSH5O43196 834 aa5.26□□□□□ -1.57
RTN4-209ENST00000405240 PLPPR3Q6T4P5 718 aa5.26□□□□□ -1.57
RTN4-209ENST00000405240 FAM9BQ8IZU0 186 aa5.26□□□□□ -1.57
RTN4-209ENST00000405240 KDM5AP29375 1690 aaKnown RBP5.26□□□□□ -1.57
RTN4-209ENST00000405240 ABCA6Q8N139 1617 aa5.26□□□□□ -1.57
RTN4-209ENST00000405240 DISP3Q9P2K9 1392 aa5.26□□□□□ -1.57
RTN4-209ENST00000405240 DCAF11Q8TEB1 546 aa5.26□□□□□ -1.57
RTN4-209ENST00000405240 PPLO60437 1756 aa5.26□□□□□ -1.57
RTN4-209ENST00000405240 STAC3Q96MF2 364 aa5.26□□□□□ -1.57
RTN4-209ENST00000405240 SETBP1Q9Y6X0 1596 aa5.26□□□□□ -1.57
RTN4-209ENST00000405240 PPRC1Q5VV67 1664 aaKnown RBP5.25□□□□□ -1.57
RTN4-209ENST00000405240 EFCAB6Q5THR3 1501 aa5.25□□□□□ -1.57
RTN4-209ENST00000405240 CFAP74Q9C0B2 1584 aa5.25□□□□□ -1.57
RTN4-209ENST00000405240 USP32Q8NFA0 1604 aa5.25□□□□□ -1.57
RTN4-209ENST00000405240 NPC1L1Q9UHC9 1359 aa5.25□□□□□ -1.57
RTN4-209ENST00000405240 NBPF1Q3BBV0 1214 aa5.24□□□□□ -1.57
RTN4-209ENST00000405240 SCAF11Q99590 1463 aaKnown RBP5.24□□□□□ -1.57
RTN4-209ENST00000405240 ADGRB3O60242 1522 aa5.24□□□□□ -1.57
RTN4-209ENST00000405240 PIK3C2BO00750 1634 aa5.24□□□□□ -1.57
RTN4-209ENST00000405240 PDE3BQ13370 1112 aa5.23□□□□□ -1.57
RTN4-209ENST00000405240 NLRP13Q86W25 1043 aa5.23□□□□□ -1.57
RTN4-209ENST00000405240 FRMPD1Q5SYB0 1578 aa5.23□□□□□ -1.57
RTN4-209ENST00000405240 IRX6P78412 446 aaPredicted RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms