RNA–Protein interactions for RNA: ENST00000396352.8

HOXA3-202, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA3, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-202ENST00000396352 ST20-MTHFSA0A0A6YYL1 179 aa21.28■■□□□ 1
HOXA3-202ENST00000396352 HNRNPMP52272 730 aaKnown RBP eCLIP21.27■■□□□ 1
HOXA3-202ENST00000396352 CCDC141Q6ZP82 1450 aa21.27■□□□□ 0.99
HOXA3-202ENST00000396352 KDM2AQ9Y2K7 1162 aa21.26■□□□□ 0.99
HOXA3-202ENST00000396352 DCAF11Q8TEB1 546 aa21.25■□□□□ 0.99
HOXA3-202ENST00000396352 TMC1Q8TDI8 760 aa21.25■□□□□ 0.99
HOXA3-202ENST00000396352 KTN1Q86UP2 1357 aaKnown RBP21.25■□□□□ 0.99
HOXA3-202ENST00000396352 BRD4O60885 1362 aaPredicted RBP21.24■□□□□ 0.99
HOXA3-202ENST00000396352 MYBBP1AQ9BQG0 1328 aaKnown RBP21.23■□□□□ 0.99
HOXA3-202ENST00000396352 UNC13BO14795 1591 aa21.22■□□□□ 0.99
HOXA3-202ENST00000396352 PRAG1Q86YV5 1406 aa21.22■□□□□ 0.99
HOXA3-202ENST00000396352 SENP3-EIF4A1A0A087X0R7 540 aa21.21■□□□□ 0.99
HOXA3-202ENST00000396352 RALBP1Q15311 655 aa21.2■□□□□ 0.98
HOXA3-202ENST00000396352 MAST1Q9Y2H9 1570 aa21.19■□□□□ 0.98
HOXA3-202ENST00000396352 ERICH6Q7L0X2 663 aa21.19■□□□□ 0.98
HOXA3-202ENST00000396352 SYCP2Q9BX26 1530 aa21.18■□□□□ 0.98
HOXA3-202ENST00000396352 LAMC1P11047 1609 aa21.17■□□□□ 0.98
HOXA3-202ENST00000396352 PLA2R1Q13018 1463 aa21.17■□□□□ 0.98
HOXA3-202ENST00000396352 MYO5CQ9NQX4 1742 aa21.17■□□□□ 0.98
HOXA3-202ENST00000396352 CCDC144AA2RUR9 1427 aa21.16■□□□□ 0.98
HOXA3-202ENST00000396352 TTC37Q6PGP7 1564 aa21.16■□□□□ 0.98
HOXA3-202ENST00000396352 CCDC136Q96JN2 1154 aa21.16■□□□□ 0.98
HOXA3-202ENST00000396352 PARD3Q8TEW0 1356 aa21.15■□□□□ 0.98
HOXA3-202ENST00000396352 A2MP01023 1474 aa21.14■□□□□ 0.97
HOXA3-202ENST00000396352 GPRASP1Q5JY77 1395 aa21.14■□□□□ 0.97
HOXA3-202ENST00000396352 IQGAP3Q86VI3 1631 aa21.14■□□□□ 0.97
HOXA3-202ENST00000396352 PRDM15P57071 1507 aaPredicted RBP21.13■□□□□ 0.97
HOXA3-202ENST00000396352 PLXNC1O60486 1568 aa21.13■□□□□ 0.97
HOXA3-202ENST00000396352 RSPH4AQ5TD94 716 aa21.13■□□□□ 0.97
HOXA3-202ENST00000396352 COL17A1Q9UMD9 1497 aaPredicted RBP21.12■□□□□ 0.97
HOXA3-202ENST00000396352 BCL11AQ9H165 835 aa21.12■□□□□ 0.97
HOXA3-202ENST00000396352 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.11■□□□□ 0.97
HOXA3-202ENST00000396352 ARHGAP5Q13017 1502 aa21.1■□□□□ 0.97
HOXA3-202ENST00000396352 NBPF1Q3BBV0 1214 aa21.09■□□□□ 0.97
HOXA3-202ENST00000396352 PER1O15534 1290 aaPredicted RBP21.09■□□□□ 0.97
HOXA3-202ENST00000396352 NLRP13Q86W25 1043 aa21.09■□□□□ 0.97
HOXA3-202ENST00000396352 EIF2AK4Q9P2K8 1649 aaKnown RBP21.08■□□□□ 0.96
HOXA3-202ENST00000396352 CHD1O14646 1710 aa21.07■□□□□ 0.96
HOXA3-202ENST00000396352 RRP1P56182 461 aaKnown RBP21.06■□□□□ 0.96
HOXA3-202ENST00000396352 MAGI2Q86UL8 1455 aa21.06■□□□□ 0.96
HOXA3-202ENST00000396352 SHROOM2Q13796 1616 aa21.06■□□□□ 0.96
HOXA3-202ENST00000396352 DISP3Q9P2K9 1392 aa21.05■□□□□ 0.96
HOXA3-202ENST00000396352 RGL3Q3MIN7 710 aa21.05■□□□□ 0.96
HOXA3-202ENST00000396352 AEBP2Q6ZN18 517 aaPredicted RBP21.05■□□□□ 0.96
HOXA3-202ENST00000396352 PLEKHH2Q8IVE3 1493 aa21.04■□□□□ 0.96
HOXA3-202ENST00000396352 TESK2Q96S53 571 aa21.04■□□□□ 0.96
HOXA3-202ENST00000396352 RNF17Q9BXT8 1623 aaKnown RBP21.04■□□□□ 0.96
HOXA3-202ENST00000396352 ATP10AO60312 1499 aa21.04■□□□□ 0.96
HOXA3-202ENST00000396352 NOP58Q9Y2X3 529 aaKnown RBP21.04■□□□□ 0.96
HOXA3-202ENST00000396352 DUOX2Q9NRD8 1548 aa21.02■□□□□ 0.96
HOXA3-202ENST00000396352 ZMYM4Q5VZL5 1548 aa21.01■□□□□ 0.95
HOXA3-202ENST00000396352 RCAN3Q9UKA8 241 aa21.01■□□□□ 0.95
HOXA3-202ENST00000396352 ERBINQ96RT1 1412 aa21■□□□□ 0.95
HOXA3-202ENST00000396352 WASHC2CQ9Y4E1 1318 aa21■□□□□ 0.95
HOXA3-202ENST00000396352 BLMP54132 1417 aaPredicted RBP21■□□□□ 0.95
HOXA3-202ENST00000396352 PAK3O75914 559 aaPredicted RBP21■□□□□ 0.95
HOXA3-202ENST00000396352 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21■□□□□ 0.95
HOXA3-202ENST00000396352 PDE3BQ13370 1112 aa21■□□□□ 0.95
HOXA3-202ENST00000396352 INSRP06213 1382 aa20.99■□□□□ 0.95
HOXA3-202ENST00000396352 EXOC6Q8TAG9 804 aa20.99■□□□□ 0.95
HOXA3-202ENST00000396352 ABCC2Q92887 1545 aa20.98■□□□□ 0.95
HOXA3-202ENST00000396352 SALL2Q9Y467 1007 aaPredicted RBP20.97■□□□□ 0.95
HOXA3-202ENST00000396352 ERCC6L2Q5T890 1561 aa20.96■□□□□ 0.95
HOXA3-202ENST00000396352 MYT1LQ9UL68 1186 aa20.96■□□□□ 0.95
HOXA3-202ENST00000396352 CC2D1BQ5T0F9 858 aaKnown RBP20.95■□□□□ 0.94
HOXA3-202ENST00000396352 IPO9Q96P70 1041 aaKnown RBP20.94■□□□□ 0.94
HOXA3-202ENST00000396352 PANK3Q9H999 370 aa20.94■□□□□ 0.94
HOXA3-202ENST00000396352 CDCA7LQ96GN5 454 aa20.94■□□□□ 0.94
HOXA3-202ENST00000396352 ANP32AP39687 249 aaKnown RBP20.93■□□□□ 0.94
HOXA3-202ENST00000396352 IQGAP1P46940 1657 aa20.93■□□□□ 0.94
HOXA3-202ENST00000396352 MADDQ8WXG6 1647 aa20.93■□□□□ 0.94
HOXA3-202ENST00000396352 TMF1P82094 1093 aa20.91■□□□□ 0.94
HOXA3-202ENST00000396352 ABCC1P33527 1531 aa20.9■□□□□ 0.94
HOXA3-202ENST00000396352 WDR7Q9Y4E6 1490 aa20.89■□□□□ 0.93
HOXA3-202ENST00000396352 PLCH2O75038 1416 aa20.89■□□□□ 0.93
HOXA3-202ENST00000396352 SPHKAPQ2M3C7 1700 aa20.88■□□□□ 0.93
HOXA3-202ENST00000396352 ZCCHC11Q5TAX3 1644 aaKnown RBP20.88■□□□□ 0.93
HOXA3-202ENST00000396352 CEP152O94986 1710 aa20.87■□□□□ 0.93
HOXA3-202ENST00000396352 TCERG1O14776 1098 aaKnown RBP20.86■□□□□ 0.93
HOXA3-202ENST00000396352 TRPM2O94759 1503 aa20.85■□□□□ 0.93
HOXA3-202ENST00000396352 TRAPPC8Q9Y2L5 1435 aa20.84■□□□□ 0.93
HOXA3-202ENST00000396352 DEKP35659 375 aaKnown RBP20.83■□□□□ 0.93
HOXA3-202ENST00000396352 NBR1Q14596 966 aa20.83■□□□□ 0.93
HOXA3-202ENST00000396352 SYNMO15061 1565 aa20.83■□□□□ 0.92
HOXA3-202ENST00000396352 PLIN1O60240 522 aa20.82■□□□□ 0.92
HOXA3-202ENST00000396352 ZBTB47Q9UFB7 747 aaPredicted RBP20.82■□□□□ 0.92
HOXA3-202ENST00000396352 MYOM1P52179 1685 aa20.82■□□□□ 0.92
HOXA3-202ENST00000396352 DEPDC5O75140 1603 aa20.81■□□□□ 0.92
HOXA3-202ENST00000396352 CLTCL1P53675 1640 aa20.81■□□□□ 0.92
HOXA3-202ENST00000396352 ZFYVE16Q7Z3T8 1539 aa20.8■□□□□ 0.92
HOXA3-202ENST00000396352 MS4A1P11836 297 aa20.79■□□□□ 0.92
HOXA3-202ENST00000396352 PDE4AP27815 886 aa20.79■□□□□ 0.92
HOXA3-202ENST00000396352 ADAMTS8Q9UP79 889 aa20.79■□□□□ 0.92
HOXA3-202ENST00000396352 EFCAB2Q5VUJ9 269 aa20.79■□□□□ 0.92
HOXA3-202ENST00000396352 BACH2Q9BYV9 841 aa20.78■□□□□ 0.92
HOXA3-202ENST00000396352 PTPRTO14522 1441 aa20.78■□□□□ 0.92
HOXA3-202ENST00000396352 SCAPERQ9BY12 1400 aa20.78■□□□□ 0.92
HOXA3-202ENST00000396352 UHRF1BP1LA0JNW5 1464 aa20.78■□□□□ 0.92
HOXA3-202ENST00000396352 CRBNQ96SW2 442 aa20.77■□□□□ 0.92
HOXA3-202ENST00000396352 SCAF11Q99590 1463 aaKnown RBP20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 158 ms