RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ANKRD30AQ9BXX3 1397 aa10.86□□□□□ -0.67
LIMA1-202ENST00000394943 ABCC3O15438 1527 aa10.85□□□□□ -0.67
LIMA1-202ENST00000394943 C3P01024 1663 aa10.85□□□□□ -0.67
LIMA1-202ENST00000394943 PIK3C2BO00750 1634 aa10.85□□□□□ -0.67
LIMA1-202ENST00000394943 HNRNPMP52272 730 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMA1-202ENST00000394943 SPAG9O60271 1321 aaKnown RBP10.84□□□□□ -0.67
LIMA1-202ENST00000394943 CNTLNQ9NXG0 1405 aa10.84□□□□□ -0.67
LIMA1-202ENST00000394943 SPATA31D1Q6ZQQ2 1576 aa10.84□□□□□ -0.67
LIMA1-202ENST00000394943 EFCAB6Q5THR3 1501 aa10.84□□□□□ -0.67
LIMA1-202ENST00000394943 MADDQ8WXG6 1647 aa10.84□□□□□ -0.67
LIMA1-202ENST00000394943 CEP152O94986 1710 aa10.84□□□□□ -0.67
LIMA1-202ENST00000394943 RPRD2Q5VT52 1461 aaKnown RBP10.84□□□□□ -0.67
LIMA1-202ENST00000394943 RAPGEF3O95398 923 aa10.83□□□□□ -0.67
LIMA1-202ENST00000394943 AFAP1Q8N556 730 aa10.83□□□□□ -0.67
LIMA1-202ENST00000394943 CLTCQ00610 1675 aaKnown RBP10.83□□□□□ -0.68
LIMA1-202ENST00000394943 KIF15Q9NS87 1388 aa10.82□□□□□ -0.68
LIMA1-202ENST00000394943 E9PCH4 1651 aa10.81□□□□□ -0.68
LIMA1-202ENST00000394943 PREX1Q8TCU6 1659 aa10.81□□□□□ -0.68
LIMA1-202ENST00000394943 NPATQ14207 1427 aa10.81□□□□□ -0.68
LIMA1-202ENST00000394943 ANKRD50Q9ULJ7 1429 aa10.8□□□□□ -0.68
LIMA1-202ENST00000394943 PZPP20742 1482 aa10.79□□□□□ -0.68
LIMA1-202ENST00000394943 RIMS1Q86UR5 1692 aaKnown RBP10.79□□□□□ -0.68
LIMA1-202ENST00000394943 SPHKAPQ2M3C7 1700 aa10.78□□□□□ -0.68
LIMA1-202ENST00000394943 PTPRTO14522 1441 aa10.77□□□□□ -0.68
LIMA1-202ENST00000394943 TSPY4P0CV99 314 aa10.77□□□□□ -0.69
LIMA1-202ENST00000394943 TSPY10P0CW01 314 aa10.77□□□□□ -0.69
LIMA1-202ENST00000394943 NOS1P29475 1434 aa10.76□□□□□ -0.69
LIMA1-202ENST00000394943 MYO3AQ8NEV4 1616 aa10.76□□□□□ -0.69
LIMA1-202ENST00000394943 SYNMO15061 1565 aa10.75□□□□□ -0.69
LIMA1-202ENST00000394943 SETD5Q9C0A6 1442 aa10.75□□□□□ -0.69
LIMA1-202ENST00000394943 TRPM2O94759 1503 aa10.75□□□□□ -0.69
LIMA1-202ENST00000394943 PTPRMP28827 1452 aa10.74□□□□□ -0.69
LIMA1-202ENST00000394943 IFT172Q9UG01 1749 aa10.73□□□□□ -0.69
LIMA1-202ENST00000394943 ZNF777Q9ULD5 760 aaPredicted RBP10.73□□□□□ -0.69
LIMA1-202ENST00000394943 ERVK-7P63135 1459 aa10.72□□□□□ -0.69
LIMA1-202ENST00000394943 UBR1Q8IWV7 1749 aa10.71□□□□□ -0.69
LIMA1-202ENST00000394943 NLRP1Q9C000 1473 aa10.69□□□□□ -0.7
LIMA1-202ENST00000394943 TMEM131LA2VDJ0 1609 aa10.69□□□□□ -0.7
LIMA1-202ENST00000394943 KDM4FA0A1W2PPD8 638 aa10.68□□□□□ -0.7
LIMA1-202ENST00000394943 SETD1BQ9UPS6 1966 aaKnown RBP10.68□□□□□ -0.7
LIMA1-202ENST00000394943 TRIM26Q12899 539 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-202ENST00000394943 PLA2R1Q13018 1463 aa10.68□□□□□ -0.7
LIMA1-202ENST00000394943 UGGT1Q9NYU2 1555 aa10.68□□□□□ -0.7
LIMA1-202ENST00000394943 ADGRB3O60242 1522 aa10.67□□□□□ -0.7
LIMA1-202ENST00000394943 SLIT1O75093 1534 aa10.67□□□□□ -0.7
LIMA1-202ENST00000394943 FAM50AQ14320 339 aaKnown RBP10.67□□□□□ -0.7
LIMA1-202ENST00000394943 CLTCL1P53675 1640 aa10.67□□□□□ -0.7
LIMA1-202ENST00000394943 RAB3GAP2Q9H2M9 1393 aa10.66□□□□□ -0.7
LIMA1-202ENST00000394943 ARHGAP23Q9P227 1491 aa10.66□□□□□ -0.7
LIMA1-202ENST00000394943 CEP170BQ9Y4F5 1589 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-202ENST00000394943 ZMYM3Q14202 1370 aa10.65□□□□□ -0.7
LIMA1-202ENST00000394943 POLR1AO95602 1720 aaPredicted RBP10.65□□□□□ -0.7
LIMA1-202ENST00000394943 A2ML1A8K2U0 1454 aa10.65□□□□□ -0.7
LIMA1-202ENST00000394943 KANK1Q14678 1352 aa10.64□□□□□ -0.71
LIMA1-202ENST00000394943 KIF1BO60333 1816 aa10.64□□□□□ -0.71
LIMA1-202ENST00000394943 RRP7BPQ9NSQ0 103 aa10.64□□□□□ -0.71
LIMA1-202ENST00000394943 PPLO60437 1756 aa10.64□□□□□ -0.71
LIMA1-202ENST00000394943 LMTK3Q96Q04 1460 aa10.63□□□□□ -0.71
LIMA1-202ENST00000394943 SETD1AO15047 1707 aaKnown RBP10.63□□□□□ -0.71
LIMA1-202ENST00000394943 MED14O60244 1454 aa10.62□□□□□ -0.71
LIMA1-202ENST00000394943 STRCQ7RTU9 1775 aa10.62□□□□□ -0.71
LIMA1-202ENST00000394943 NRXN1Q9ULB1 1477 aa10.62□□□□□ -0.71
LIMA1-202ENST00000394943 PRAG1Q86YV5 1406 aa10.61□□□□□ -0.71
LIMA1-202ENST00000394943 MYO5BQ9ULV0 1848 aa10.61□□□□□ -0.71
LIMA1-202ENST00000394943 PPARGC1BQ86YN6 1023 aaKnown RBP10.61□□□□□ -0.71
LIMA1-202ENST00000394943 KIAA1210Q9ULL0 1709 aa10.6□□□□□ -0.71
LIMA1-202ENST00000394943 KIF3BO15066 747 aa10.6□□□□□ -0.71
LIMA1-202ENST00000394943 ZFYVE9O95405 1425 aa10.6□□□□□ -0.71
LIMA1-202ENST00000394943 SPATA31E1Q6ZUB1 1445 aa10.59□□□□□ -0.71
LIMA1-202ENST00000394943 ANKRD30BQ9BXX2 1392 aa10.59□□□□□ -0.71
LIMA1-202ENST00000394943 NEXMIFQ5QGS0 1516 aa10.59□□□□□ -0.71
LIMA1-202ENST00000394943 DIP2AQ14689 1571 aa10.59□□□□□ -0.71
LIMA1-202ENST00000394943 NRXN3Q9Y4C0 1643 aa10.58□□□□□ -0.72
LIMA1-202ENST00000394943 SETBP1Q9Y6X0 1596 aa10.58□□□□□ -0.72
LIMA1-202ENST00000394943 CHIC2Q9UKJ5 165 aa10.57□□□□□ -0.72
LIMA1-202ENST00000394943 NUP155O75694 1391 aa10.57□□□□□ -0.72
LIMA1-202ENST00000394943 MYOM2P54296 1465 aa10.57□□□□□ -0.72
LIMA1-202ENST00000394943 LAMC1P11047 1609 aa10.57□□□□□ -0.72
LIMA1-202ENST00000394943 CLSPNQ9HAW4 1339 aa10.57□□□□□ -0.72
LIMA1-202ENST00000394943 DHX57Q6P158 1386 aaKnown RBP10.56□□□□□ -0.72
LIMA1-202ENST00000394943 TNRQ92752 1358 aa10.56□□□□□ -0.72
LIMA1-202ENST00000394943 NWD1Q149M9 1564 aa10.55□□□□□ -0.72
LIMA1-202ENST00000394943 KNDC1Q76NI1 1749 aa10.54□□□□□ -0.72
LIMA1-202ENST00000394943 WASHC2CQ9Y4E1 1318 aa10.53□□□□□ -0.72
LIMA1-202ENST00000394943 UHRF1BP1Q6BDS2 1440 aa10.53□□□□□ -0.72
LIMA1-202ENST00000394943 MPHOSPH9Q99550 1183 aa10.53□□□□□ -0.72
LIMA1-202ENST00000394943 SLC52A1Q9NWF4 448 aa10.53□□□□□ -0.72
LIMA1-202ENST00000394943 IQGAP1P46940 1657 aa10.52□□□□□ -0.72
LIMA1-202ENST00000394943 XRN1Q8IZH2 1706 aaKnown RBP10.5□□□□□ -0.73
LIMA1-202ENST00000394943 GGT6Q6P531 493 aa10.49□□□□□ -0.73
LIMA1-202ENST00000394943 CHD2O14647 1828 aaKnown RBP10.49□□□□□ -0.73
LIMA1-202ENST00000394943 STAC3Q96MF2 364 aa10.48□□□□□ -0.73
LIMA1-202ENST00000394943 RPGRIP1LQ68CZ1 1315 aa10.48□□□□□ -0.73
LIMA1-202ENST00000394943 ARID4BQ4LE39 1312 aaPredicted RBP10.47□□□□□ -0.73
LIMA1-202ENST00000394943 TRPM1Q7Z4N2 1603 aa10.47□□□□□ -0.73
LIMA1-202ENST00000394943 TMEM2Q9UHN6 1383 aa10.47□□□□□ -0.73
LIMA1-202ENST00000394943 PLEKHG1Q9ULL1 1385 aa10.46□□□□□ -0.74
LIMA1-202ENST00000394943 SCAF11Q99590 1463 aaKnown RBP10.45□□□□□ -0.74
LIMA1-202ENST00000394943 CFAP65Q6ZU64 1925 aaKnown RBP10.45□□□□□ -0.74
LIMA1-202ENST00000394943 PIK3C2GO75747 1445 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms