RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 NISCHQ9Y2I1 1504 aa17.44■□□□□ 0.38
LIMA1-202ENST00000394943 CCDC180Q9P1Z9 1646 aa15.67■□□□□ 0.1
LIMA1-202ENST00000394943 MYO15BQ96JP2 1530 aa14.75□□□□□ -0.05
LIMA1-202ENST00000394943 DCAF1Q9Y4B6 1507 aa14.71□□□□□ -0.05
LIMA1-202ENST00000394943 ZCCHC6Q5VYS8 1495 aaKnown RBP14.64□□□□□ -0.07
LIMA1-202ENST00000394943 ABCC9O60706 1549 aa14.56□□□□□ -0.08
LIMA1-202ENST00000394943 NACADO15069 1562 aa14.55□□□□□ -0.08
LIMA1-202ENST00000394943 RB1CC1Q8TDY2 1594 aa14.43□□□□□ -0.1
LIMA1-202ENST00000394943 UNC13AQ9UPW8 1703 aa14.24□□□□□ -0.13
LIMA1-202ENST00000394943 SHROOM4Q9ULL8 1493 aa14.15□□□□□ -0.14
LIMA1-202ENST00000394943 BICRAQ9NZM4 1560 aa14.07□□□□□ -0.16
LIMA1-202ENST00000394943 SCRIBQ14160 1630 aa13.9□□□□□ -0.18
LIMA1-202ENST00000394943 DCAF8L2P0C7V8 631 aa13.66□□□□□ -0.22
LIMA1-202ENST00000394943 PEG3Q9GZU2 1588 aa13.59□□□□□ -0.23
LIMA1-202ENST00000394943 EIF4G1Q04637 1599 aaKnown RBP13.57□□□□□ -0.24
LIMA1-202ENST00000394943 SMARCA4P51532 1647 aa13.52□□□□□ -0.25
LIMA1-202ENST00000394943 BAZ1AQ9NRL2 1556 aaPredicted RBP13.5□□□□□ -0.25
LIMA1-202ENST00000394943 PABPN1Q86U42 306 aaKnown RBP eCLIP13.45□□□□□ -0.26
LIMA1-202ENST00000394943 CC2D2AQ9P2K1 1620 aa13.43□□□□□ -0.26
LIMA1-202ENST00000394943 HMGXB3Q12766 1538 aa13.41□□□□□ -0.26
LIMA1-202ENST00000394943 CECR2Q9BXF3 1484 aa13.4□□□□□ -0.26
LIMA1-202ENST00000394943 SMARCA2P51531 1590 aa13.37□□□□□ -0.27
LIMA1-202ENST00000394943 NCAPD3P42695 1498 aa13.37□□□□□ -0.27
LIMA1-202ENST00000394943 MROH2BQ7Z745 1585 aa13.35□□□□□ -0.27
LIMA1-202ENST00000394943 ATAD2BQ9ULI0 1458 aa13.32□□□□□ -0.28
LIMA1-202ENST00000394943 RSF1Q96T23 1441 aaPredicted RBP13.26□□□□□ -0.29
LIMA1-202ENST00000394943 WIZO95785 1651 aa13.22□□□□□ -0.29
LIMA1-202ENST00000394943 TOP2AP11388 1531 aaKnown RBP13.21□□□□□ -0.29
LIMA1-202ENST00000394943 DNAJC5BQ9UF47 199 aa13.17□□□□□ -0.3
LIMA1-202ENST00000394943 BAZ1BQ9UIG0 1483 aaKnown RBP13.12□□□□□ -0.31
LIMA1-202ENST00000394943 PRDM2Q13029 1718 aa13.09□□□□□ -0.31
LIMA1-202ENST00000394943 LAMC3Q9Y6N6 1575 aa13.01□□□□□ -0.33
LIMA1-202ENST00000394943 CFTRP13569 1480 aa12.92□□□□□ -0.34
LIMA1-202ENST00000394943 CCDC88BA6NC98 1476 aa12.92□□□□□ -0.34
LIMA1-202ENST00000394943 CADPSQ9ULU8 1353 aa12.83□□□□□ -0.36
LIMA1-202ENST00000394943 THOC2Q8NI27 1593 aaKnown RBP12.81□□□□□ -0.36
LIMA1-202ENST00000394943 KIF21AQ7Z4S6 1674 aa12.79□□□□□ -0.36
LIMA1-202ENST00000394943 WDR62O43379 1518 aa12.74□□□□□ -0.37
LIMA1-202ENST00000394943 NESP48681 1621 aa12.73□□□□□ -0.37
LIMA1-202ENST00000394943 PDS5BQ9NTI5 1447 aa12.72□□□□□ -0.37
LIMA1-202ENST00000394943 BIVM-ERCC5R4GMW8 1640 aa12.67□□□□□ -0.38
LIMA1-202ENST00000394943 FANCD2Q9BXW9 1451 aa12.67□□□□□ -0.38
LIMA1-202ENST00000394943 CUX2O14529 1486 aa12.66□□□□□ -0.38
LIMA1-202ENST00000394943 ABCC8Q09428 1581 aa12.65□□□□□ -0.38
LIMA1-202ENST00000394943 WDR97A6NE52 1622 aa12.65□□□□□ -0.38
LIMA1-202ENST00000394943 MRC2Q9UBG0 1479 aa12.65□□□□□ -0.38
LIMA1-202ENST00000394943 DNMBPQ6XZF7 1577 aa12.64□□□□□ -0.39
LIMA1-202ENST00000394943 CEP164Q9UPV0 1460 aa12.64□□□□□ -0.39
LIMA1-202ENST00000394943 URB2Q14146 1524 aaKnown RBP12.6□□□□□ -0.39
LIMA1-202ENST00000394943 TOP2BQ02880 1626 aa12.59□□□□□ -0.39
LIMA1-202ENST00000394943 TOPBP1Q92547 1522 aa12.55□□□□□ -0.4
LIMA1-202ENST00000394943 CUX1P39880 1505 aa12.55□□□□□ -0.4
LIMA1-202ENST00000394943 TARBP1Q13395 1621 aaKnown RBP12.55□□□□□ -0.4
LIMA1-202ENST00000394943 ERCC6Q03468 1493 aa12.5□□□□□ -0.41
LIMA1-202ENST00000394943 SUPT5HO00267 1087 aaKnown RBP12.49□□□□□ -0.41
LIMA1-202ENST00000394943 SYNJ1O43426 1573 aa12.49□□□□□ -0.41
LIMA1-202ENST00000394943 IFT140Q96RY7 1462 aa12.45□□□□□ -0.42
LIMA1-202ENST00000394943 ABCA5Q8WWZ7 1642 aa12.44□□□□□ -0.42
LIMA1-202ENST00000394943 POLA1P09884 1462 aaPredicted RBP12.43□□□□□ -0.42
LIMA1-202ENST00000394943 ABCA10Q8WWZ4 1543 aa12.43□□□□□ -0.42
LIMA1-202ENST00000394943 WRNQ14191 1432 aaPredicted RBP eCLIP12.41□□□□□ -0.42
LIMA1-202ENST00000394943 FGD5Q6ZNL6 1462 aa12.39□□□□□ -0.43
LIMA1-202ENST00000394943 EIF4G3O43432 1585 aaKnown RBP12.35□□□□□ -0.43
LIMA1-202ENST00000394943 PBRM1Q86U86 1689 aa12.35□□□□□ -0.43
LIMA1-202ENST00000394943 ERICH3Q5RHP9 1530 aa12.31□□□□□ -0.44
LIMA1-202ENST00000394943 SOGA1O94964 1423 aa12.27□□□□□ -0.45
LIMA1-202ENST00000394943 CUL7Q14999 1698 aa12.26□□□□□ -0.45
LIMA1-202ENST00000394943 MAGI1Q96QZ7 1491 aaPredicted RBP12.24□□□□□ -0.45
LIMA1-202ENST00000394943 RAD54L2Q9Y4B4 1467 aa12.24□□□□□ -0.45
LIMA1-202ENST00000394943 ADAMTS12P58397 1594 aa12.24□□□□□ -0.45
LIMA1-202ENST00000394943 ZNF608Q9ULD9 1512 aaPredicted RBP12.24□□□□□ -0.45
LIMA1-202ENST00000394943 GRIN2BQ13224 1484 aa12.21□□□□□ -0.45
LIMA1-202ENST00000394943 GAPVD1Q14C86 1478 aa12.19□□□□□ -0.46
LIMA1-202ENST00000394943 EEA1Q15075 1411 aa12.19□□□□□ -0.46
LIMA1-202ENST00000394943 CHD1O14646 1710 aa12.16□□□□□ -0.46
LIMA1-202ENST00000394943 CLASP1Q7Z460 1538 aa12.15□□□□□ -0.46
LIMA1-202ENST00000394943 SYNJ2O15056 1496 aa12.14□□□□□ -0.47
LIMA1-202ENST00000394943 KIF27Q86VH2 1401 aa12.14□□□□□ -0.47
LIMA1-202ENST00000394943 SHROOM2Q13796 1616 aa12.14□□□□□ -0.47
LIMA1-202ENST00000394943 KIF21BO75037 1637 aa12.13□□□□□ -0.47
LIMA1-202ENST00000394943 AQRO60306 1485 aaKnown RBP eCLIP12.12□□□□□ -0.47
LIMA1-202ENST00000394943 PRXQ9BXM0 1461 aa12.12□□□□□ -0.47
LIMA1-202ENST00000394943 FHAD1B1AJZ9 1412 aa12.12□□□□□ -0.47
LIMA1-202ENST00000394943 SNAPC4Q5SXM2 1469 aa12.11□□□□□ -0.47
LIMA1-202ENST00000394943 NUP160Q12769 1436 aa12.1□□□□□ -0.47
LIMA1-202ENST00000394943 IGF1RP08069 1367 aa12.1□□□□□ -0.47
LIMA1-202ENST00000394943 CHIC1Q5VXU3 224 aa12.07□□□□□ -0.48
LIMA1-202ENST00000394943 RUSC2Q8N2Y8 1516 aa12.07□□□□□ -0.48
LIMA1-202ENST00000394943 GRIN2AQ12879 1464 aa12.07□□□□□ -0.48
LIMA1-202ENST00000394943 CEP170Q5SW79 1584 aa12.06□□□□□ -0.48
LIMA1-202ENST00000394943 CTTNBP2Q8WZ74 1663 aa12.05□□□□□ -0.48
LIMA1-202ENST00000394943 TDRD9Q8NDG6 1382 aaKnown RBP12.05□□□□□ -0.48
LIMA1-202ENST00000394943 RAPGEF2Q9Y4G8 1499 aa12□□□□□ -0.49
LIMA1-202ENST00000394943 UGGT2Q9NYU1 1516 aa11.97□□□□□ -0.49
LIMA1-202ENST00000394943 KIAA0586Q9BVV6 1533 aa11.96□□□□□ -0.49
LIMA1-202ENST00000394943 TRIM41Q8WV44 630 aa11.95□□□□□ -0.5
LIMA1-202ENST00000394943 CARMIL1Q5VZK9 1371 aa11.95□□□□□ -0.5
LIMA1-202ENST00000394943 SAMD9Q5K651 1589 aa11.94□□□□□ -0.5
LIMA1-202ENST00000394943 IQGAP2Q13576 1575 aa11.92□□□□□ -0.5
LIMA1-202ENST00000394943 GOLGA3Q08378 1498 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms