RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 PLA2R1Q13018 1463 aa31.39■■■□□ 2.62
LDB1-201ENST00000361198 CCDC144AA2RUR9 1427 aa31.39■■■□□ 2.62
LDB1-201ENST00000361198 KDM5CP41229 1560 aa31.38■■■□□ 2.61
LDB1-201ENST00000361198 SPAG9O60271 1321 aaKnown RBP31.38■■■□□ 2.61
LDB1-201ENST00000361198 ABCA9Q8IUA7 1624 aa31.37■■■□□ 2.61
LDB1-201ENST00000361198 ASXL2Q76L83 1435 aa31.36■■■□□ 2.61
LDB1-201ENST00000361198 FANCAO15360 1455 aa31.35■■■□□ 2.61
LDB1-201ENST00000361198 RTEL1-TNFRSF6BF6WH68 1400 aa31.35■■■□□ 2.61
LDB1-201ENST00000361198 BCORL1Q5H9F3 1711 aa31.33■■■□□ 2.61
LDB1-201ENST00000361198 ZFYVE16Q7Z3T8 1539 aa31.33■■■□□ 2.61
LDB1-201ENST00000361198 MYT1Q01538 1121 aa31.32■■■□□ 2.6
LDB1-201ENST00000361198 CARD11Q9BXL7 1154 aa31.31■■■□□ 2.6
LDB1-201ENST00000361198 RGL3Q3MIN7 710 aa31.26■■■□□ 2.59
LDB1-201ENST00000361198 PRKRIP1Q9H875 184 aaPredicted RBP31.26■■■□□ 2.59
LDB1-201ENST00000361198 ATP10AO60312 1499 aa31.25■■■□□ 2.59
LDB1-201ENST00000361198 ADGRL1O94910 1474 aa31.24■■■□□ 2.59
LDB1-201ENST00000361198 SCAPERQ9BY12 1400 aa31.23■■■□□ 2.59
LDB1-201ENST00000361198 PRAG1Q86YV5 1406 aa31.22■■■□□ 2.59
LDB1-201ENST00000361198 ATP7AQ04656 1500 aa31.22■■■□□ 2.59
LDB1-201ENST00000361198 INO80Q9ULG1 1556 aaPredicted RBP31.21■■■□□ 2.59
LDB1-201ENST00000361198 A2MP01023 1474 aa31.21■■■□□ 2.59
LDB1-201ENST00000361198 NPM1P06748 294 aaKnown RBP eCLIP31.2■■■□□ 2.59
LDB1-201ENST00000361198 ROCK2O75116 1388 aaKnown RBP31.2■■■□□ 2.58
LDB1-201ENST00000361198 ARID4BQ4LE39 1312 aaPredicted RBP31.19■■■□□ 2.58
LDB1-201ENST00000361198 CCDC184Q52MB2 194 aa31.18■■■□□ 2.58
LDB1-201ENST00000361198 POLR3GLQ9BT43 218 aa31.18■■■□□ 2.58
LDB1-201ENST00000361198 TRPM1Q7Z4N2 1603 aa31.17■■■□□ 2.58
LDB1-201ENST00000361198 ST20-MTHFSA0A0A6YYL1 179 aa31.17■■■□□ 2.58
LDB1-201ENST00000361198 TSHZ2Q9NRE2 1034 aa31.17■■■□□ 2.58
LDB1-201ENST00000361198 FKBP8Q14318 412 aa31.16■■■□□ 2.58
LDB1-201ENST00000361198 E9PCH4 1651 aa31.15■■■□□ 2.58
LDB1-201ENST00000361198 DEPDC5O75140 1603 aa31.14■■■□□ 2.58
LDB1-201ENST00000361198 MYT1LQ9UL68 1186 aa31.13■■■□□ 2.57
LDB1-201ENST00000361198 DHX29Q7Z478 1369 aaKnown RBP31.12■■■□□ 2.57
LDB1-201ENST00000361198 NBPF1Q3BBV0 1214 aa31.1■■■□□ 2.57
LDB1-201ENST00000361198 HNRNPUQ00839 825 aaKnown RBP eCLIP31.08■■■□□ 2.57
LDB1-201ENST00000361198 KIF3BO15066 747 aa31.07■■■□□ 2.56
LDB1-201ENST00000361198 GPRASP1Q5JY77 1395 aa31.06■■■□□ 2.56
LDB1-201ENST00000361198 NEFLP07196 543 aa31.05■■■□□ 2.56
LDB1-201ENST00000361198 MRS2Q9HD23 443 aa31.04■■■□□ 2.56
LDB1-201ENST00000361198 VWDEQ8N2E2 1590 aa31.04■■■□□ 2.56
LDB1-201ENST00000361198 CD109Q6YHK3 1445 aa31.03■■■□□ 2.56
LDB1-201ENST00000361198 TET3O43151 1660 aa31.03■■■□□ 2.56
LDB1-201ENST00000361198 KIDINS220Q9ULH0 1771 aa31.03■■■□□ 2.56
LDB1-201ENST00000361198 TRPM2O94759 1503 aa31.03■■■□□ 2.56
LDB1-201ENST00000361198 KANK1Q14678 1352 aa31.02■■■□□ 2.56
LDB1-201ENST00000361198 PTPRTO14522 1441 aa31.02■■■□□ 2.56
LDB1-201ENST00000361198 BCANQ96GW7 911 aa31.01■■■□□ 2.56
LDB1-201ENST00000361198 EIF2AK4Q9P2K8 1649 aaKnown RBP31.01■■■□□ 2.56
LDB1-201ENST00000361198 SPHKAPQ2M3C7 1700 aa31.01■■■□□ 2.56
LDB1-201ENST00000361198 ZNF518AQ6AHZ1 1483 aa31.01■■■□□ 2.55
LDB1-201ENST00000361198 LAMC1P11047 1609 aa30.98■■■□□ 2.55
LDB1-201ENST00000361198 MROH1Q8NDA8 1641 aa30.98■■■□□ 2.55
LDB1-201ENST00000361198 PRDM15P57071 1507 aaPredicted RBP30.98■■■□□ 2.55
LDB1-201ENST00000361198 FAM9BQ8IZU0 186 aa30.98■■■□□ 2.55
LDB1-201ENST00000361198 CNGB1Q14028 1251 aaPredicted RBP30.96■■■□□ 2.55
LDB1-201ENST00000361198 CLTCL1P53675 1640 aa30.95■■■□□ 2.55
LDB1-201ENST00000361198 CEP152O94986 1710 aa30.95■■■□□ 2.55
LDB1-201ENST00000361198 CFAP74Q9C0B2 1584 aa30.94■■■□□ 2.54
LDB1-201ENST00000361198 POGZQ7Z3K3 1410 aa30.91■■■□□ 2.54
LDB1-201ENST00000361198 RNF17Q9BXT8 1623 aaKnown RBP30.88■■■□□ 2.53
LDB1-201ENST00000361198 TESK2Q96S53 571 aa30.87■■■□□ 2.53
LDB1-201ENST00000361198 MADDQ8WXG6 1647 aa30.87■■■□□ 2.53
LDB1-201ENST00000361198 MLH3Q9UHC1 1453 aa30.84■■■□□ 2.53
LDB1-201ENST00000361198 EFCAB6Q5THR3 1501 aa30.83■■■□□ 2.53
LDB1-201ENST00000361198 COL17A1Q9UMD9 1497 aaPredicted RBP30.83■■■□□ 2.53
LDB1-201ENST00000361198 DISP3Q9P2K9 1392 aa30.81■■■□□ 2.52
LDB1-201ENST00000361198 HECW2Q9P2P5 1572 aa30.81■■■□□ 2.52
LDB1-201ENST00000361198 STAC3Q96MF2 364 aa30.81■■■□□ 2.52
LDB1-201ENST00000361198 FRMPD1Q5SYB0 1578 aa30.8■■■□□ 2.52
LDB1-201ENST00000361198 PPRC1Q5VV67 1664 aaKnown RBP30.8■■■□□ 2.52
LDB1-201ENST00000361198 UGGT1Q9NYU2 1555 aa30.8■■■□□ 2.52
LDB1-201ENST00000361198 LMTK2Q8IWU2 1503 aa30.78■■■□□ 2.52
LDB1-201ENST00000361198 NEO1Q92859 1461 aa30.78■■■□□ 2.52
LDB1-201ENST00000361198 NEURL4Q96JN8 1562 aa30.76■■■□□ 2.51
LDB1-201ENST00000361198 ZBED9Q6R2W3 1325 aa30.76■■■□□ 2.51
LDB1-201ENST00000361198 RAPGEF3O95398 923 aa30.75■■■□□ 2.51
LDB1-201ENST00000361198 ABCA6Q8N139 1617 aa30.74■■■□□ 2.51
LDB1-201ENST00000361198 TMF1P82094 1093 aa30.73■■■□□ 2.51
LDB1-201ENST00000361198 CYB5RLQ6IPT4 315 aa30.73■■■□□ 2.51
LDB1-201ENST00000361198 IQGAP1P46940 1657 aa30.73■■■□□ 2.51
LDB1-201ENST00000361198 KTN1Q86UP2 1357 aaKnown RBP30.72■■■□□ 2.51
LDB1-201ENST00000361198 GGT6Q6P531 493 aa30.72■■■□□ 2.51
LDB1-201ENST00000361198 RALBP1Q15311 655 aa30.71■■■□□ 2.51
LDB1-201ENST00000361198 KIF1BO60333 1816 aa30.71■■■□□ 2.51
LDB1-201ENST00000361198 PER1O15534 1290 aaPredicted RBP30.71■■■□□ 2.51
LDB1-201ENST00000361198 TMC1Q8TDI8 760 aa30.69■■■□□ 2.5
LDB1-201ENST00000361198 MYBBP1AQ9BQG0 1328 aaKnown RBP30.69■■■□□ 2.5
LDB1-201ENST00000361198 PNISRQ8TF01 805 aaKnown RBP30.68■■■□□ 2.5
LDB1-201ENST00000361198 SCAF11Q99590 1463 aaKnown RBP30.67■■■□□ 2.5
LDB1-201ENST00000361198 NPATQ14207 1427 aa30.66■■■□□ 2.5
LDB1-201ENST00000361198 ERICH6BQ5W0A0 696 aa30.65■■■□□ 2.5
LDB1-201ENST00000361198 CFAP65Q6ZU64 1925 aaKnown RBP30.65■■■□□ 2.5
LDB1-201ENST00000361198 MAP3K4Q9Y6R4 1608 aa30.65■■■□□ 2.5
LDB1-201ENST00000361198 MROH2AA6NES4 1674 aa30.64■■■□□ 2.5
LDB1-201ENST00000361198 KIAA1210Q9ULL0 1709 aa30.64■■■□□ 2.5
LDB1-201ENST00000361198 BRD4O60885 1362 aaPredicted RBP30.64■■■□□ 2.49
LDB1-201ENST00000361198 MYOM2P54296 1465 aa30.63■■■□□ 2.49
LDB1-201ENST00000361198 PARD3Q8TEW0 1356 aa30.63■■■□□ 2.49
LDB1-201ENST00000361198 PANK3Q9H999 370 aa30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms