RNA–Protein interactions for RNA: ENST00000357732.8

RTN4-204, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,390 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-204ENST00000357732 TSPY10P0CW01 314 aa23.84■■□□□ 1.41
RTN4-204ENST00000357732 POLR3GLQ9BT43 218 aa23.84■■□□□ 1.41
RTN4-204ENST00000357732 CCDC136Q96JN2 1154 aa23.82■■□□□ 1.4
RTN4-204ENST00000357732 CNGB1Q14028 1251 aaPredicted RBP23.8■■□□□ 1.4
RTN4-204ENST00000357732 LAMC1P11047 1609 aa23.8■■□□□ 1.4
RTN4-204ENST00000357732 HNRNPMP52272 730 aaKnown RBP eCLIP23.8■■□□□ 1.47e-7■■■■□ 22.8
RTN4-204ENST00000357732 RSPH4AQ5TD94 716 aa23.8■■□□□ 1.4
RTN4-204ENST00000357732 INSRP06213 1382 aa23.79■■□□□ 1.4
RTN4-204ENST00000357732 ZMYM4Q5VZL5 1548 aa23.79■■□□□ 1.4
RTN4-204ENST00000357732 CCDC141Q6ZP82 1450 aa23.78■■□□□ 1.4
RTN4-204ENST00000357732 TRPM1Q7Z4N2 1603 aa23.78■■□□□ 1.4
RTN4-204ENST00000357732 FAM135AQ9P2D6 1515 aa23.77■■□□□ 1.4
RTN4-204ENST00000357732 NOP58Q9Y2X3 529 aaKnown RBP23.76■■□□□ 1.39
RTN4-204ENST00000357732 PREX2Q70Z35 1606 aa23.75■■□□□ 1.39
RTN4-204ENST00000357732 ST20-MTHFSA0A0A6YYL1 179 aa23.75■■□□□ 1.39
RTN4-204ENST00000357732 PDE3BQ13370 1112 aa23.75■■□□□ 1.39
RTN4-204ENST00000357732 MAST1Q9Y2H9 1570 aa23.75■■□□□ 1.39
RTN4-204ENST00000357732 WASHC2CQ9Y4E1 1318 aa23.74■■□□□ 1.39
RTN4-204ENST00000357732 GPRASP1Q5JY77 1395 aa23.73■■□□□ 1.39
RTN4-204ENST00000357732 PARD3Q8TEW0 1356 aa23.73■■□□□ 1.39
RTN4-204ENST00000357732 UNC13BO14795 1591 aa23.73■■□□□ 1.39
RTN4-204ENST00000357732 PRAG1Q86YV5 1406 aa23.73■■□□□ 1.39
RTN4-204ENST00000357732 KDM2AQ9Y2K7 1162 aa23.72■■□□□ 1.39
RTN4-204ENST00000357732 NLRP13Q86W25 1043 aa23.72■■□□□ 1.39
RTN4-204ENST00000357732 SAMD9LQ8IVG5 1584 aa23.71■■□□□ 1.39
RTN4-204ENST00000357732 ANP32AP39687 249 aaKnown RBP23.7■■□□□ 1.38
RTN4-204ENST00000357732 DCAF11Q8TEB1 546 aa23.7■■□□□ 1.38
RTN4-204ENST00000357732 EIF2AK4Q9P2K8 1649 aaKnown RBP23.69■■□□□ 1.38
RTN4-204ENST00000357732 CCDC144AA2RUR9 1427 aa23.69■■□□□ 1.38
RTN4-204ENST00000357732 CDC42BPBQ9Y5S2 1711 aa23.68■■□□□ 1.38
RTN4-204ENST00000357732 RRP1P56182 461 aaKnown RBP23.66■■□□□ 1.38
RTN4-204ENST00000357732 PRDM15P57071 1507 aaPredicted RBP23.66■■□□□ 1.38
RTN4-204ENST00000357732 COL17A1Q9UMD9 1497 aaPredicted RBP23.66■■□□□ 1.38
RTN4-204ENST00000357732 IPO9Q96P70 1041 aaKnown RBP23.65■■□□□ 1.38
RTN4-204ENST00000357732 PLXNC1O60486 1568 aa23.65■■□□□ 1.38
RTN4-204ENST00000357732 IQGAP3Q86VI3 1631 aa23.63■■□□□ 1.37
RTN4-204ENST00000357732 ATP10AO60312 1499 aa23.62■■□□□ 1.37
RTN4-204ENST00000357732 PLEKHH2Q8IVE3 1493 aa23.62■■□□□ 1.37
RTN4-204ENST00000357732 RCAN3Q9UKA8 241 aa23.61■■□□□ 1.37
RTN4-204ENST00000357732 TCERG1O14776 1098 aaKnown RBP23.6■■□□□ 1.37
RTN4-204ENST00000357732 PER1O15534 1290 aaPredicted RBP23.59■■□□□ 1.37
RTN4-204ENST00000357732 A2MP01023 1474 aa23.59■■□□□ 1.37
RTN4-204ENST00000357732 BLMP54132 1417 aaPredicted RBP23.58■■□□□ 1.37
RTN4-204ENST00000357732 SENP3-EIF4A1A0A087X0R7 540 aa23.58■■□□□ 1.37
RTN4-204ENST00000357732 SYCP2Q9BX26 1530 aa23.58■■□□□ 1.37
RTN4-204ENST00000357732 PLA2R1Q13018 1463 aa23.56■■□□□ 1.36
RTN4-204ENST00000357732 MAGI2Q86UL8 1455 aa23.56■■□□□ 1.36
RTN4-204ENST00000357732 MS4A1P11836 297 aa23.56■■□□□ 1.36
RTN4-204ENST00000357732 TTC37Q6PGP7 1564 aa23.55■■□□□ 1.36
RTN4-204ENST00000357732 MYO5CQ9NQX4 1742 aa23.55■■□□□ 1.36
RTN4-204ENST00000357732 ARHGAP5Q13017 1502 aa23.54■■□□□ 1.36
RTN4-204ENST00000357732 ZBTB47Q9UFB7 747 aaPredicted RBP23.54■■□□□ 1.36
RTN4-204ENST00000357732 RNF17Q9BXT8 1623 aaKnown RBP23.53■■□□□ 1.36
RTN4-204ENST00000357732 DUOX2Q9NRD8 1548 aa23.53■■□□□ 1.36
RTN4-204ENST00000357732 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.52■■□□□ 1.367e-15■■□□□ 12
RTN4-204ENST00000357732 PAK3O75914 559 aaPredicted RBP23.52■■□□□ 1.36
RTN4-204ENST00000357732 DEKP35659 375 aaKnown RBP23.52■■□□□ 1.36
RTN4-204ENST00000357732 RGL3Q3MIN7 710 aa23.52■■□□□ 1.36
RTN4-204ENST00000357732 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.52■■□□□ 1.36
RTN4-204ENST00000357732 ERBINQ96RT1 1412 aa23.51■■□□□ 1.35
RTN4-204ENST00000357732 CHD1O14646 1710 aa23.51■■□□□ 1.35
RTN4-204ENST00000357732 TESK2Q96S53 571 aa23.5■■□□□ 1.35
RTN4-204ENST00000357732 NBPF1Q3BBV0 1214 aa23.49■■□□□ 1.35
RTN4-204ENST00000357732 EXOC6Q8TAG9 804 aa23.49■■□□□ 1.35
RTN4-204ENST00000357732 TMF1P82094 1093 aa23.48■■□□□ 1.35
RTN4-204ENST00000357732 DISP3Q9P2K9 1392 aa23.46■■□□□ 1.35
RTN4-204ENST00000357732 SHROOM2Q13796 1616 aa23.46■■□□□ 1.35
RTN4-204ENST00000357732 ERCC6L2Q5T890 1561 aa23.45■■□□□ 1.34
RTN4-204ENST00000357732 ABCC2Q92887 1545 aa23.43■■□□□ 1.34
RTN4-204ENST00000357732 STAC3Q96MF2 364 aa23.42■■□□□ 1.34
RTN4-204ENST00000357732 RTL5Q5HYW3 569 aaPredicted RBP23.42■■□□□ 1.34
RTN4-204ENST00000357732 BACH2Q9BYV9 841 aa23.41■■□□□ 1.34
RTN4-204ENST00000357732 PDE4AP27815 886 aa23.4■■□□□ 1.34
RTN4-204ENST00000357732 PANK3Q9H999 370 aa23.4■■□□□ 1.34
RTN4-204ENST00000357732 IQGAP1P46940 1657 aa23.39■■□□□ 1.34
RTN4-204ENST00000357732 NBR1Q14596 966 aa23.38■■□□□ 1.33
RTN4-204ENST00000357732 CLASP1Q7Z460 1538 aa23.37■■□□□ 1.33
RTN4-204ENST00000357732 SYNMO15061 1565 aa23.37■■□□□ 1.33
RTN4-204ENST00000357732 MADDQ8WXG6 1647 aa23.36■■□□□ 1.33
RTN4-204ENST00000357732 USP35Q9P2H5 1018 aa23.36■■□□□ 1.33
RTN4-204ENST00000357732 CDCA8Q53HL2 280 aa23.35■■□□□ 1.33
RTN4-204ENST00000357732 CC2D1BQ5T0F9 858 aaKnown RBP23.35■■□□□ 1.33
RTN4-204ENST00000357732 WDR7Q9Y4E6 1490 aa23.35■■□□□ 1.33
RTN4-204ENST00000357732 CDCA7LQ96GN5 454 aa23.34■■□□□ 1.33
RTN4-204ENST00000357732 SCAPERQ9BY12 1400 aa23.33■■□□□ 1.33
RTN4-204ENST00000357732 PLCH2O75038 1416 aa23.32■■□□□ 1.32
RTN4-204ENST00000357732 SPHKAPQ2M3C7 1700 aa23.32■■□□□ 1.32
RTN4-204ENST00000357732 NPC1L1Q9UHC9 1359 aa23.32■■□□□ 1.32
RTN4-204ENST00000357732 TRPM2O94759 1503 aa23.32■■□□□ 1.32
RTN4-204ENST00000357732 SALL2Q9Y467 1007 aaPredicted RBP23.31■■□□□ 1.32
RTN4-204ENST00000357732 CEP152O94986 1710 aa23.3■■□□□ 1.32
RTN4-204ENST00000357732 ABCC1P33527 1531 aa23.3■■□□□ 1.32
RTN4-204ENST00000357732 NEURL4Q96JN8 1562 aa23.3■■□□□ 1.32
RTN4-204ENST00000357732 PIK3C2GO75747 1445 aa23.3■■□□□ 1.32
RTN4-204ENST00000357732 DDRGK1Q96HY6 314 aa23.29■■□□□ 1.32
RTN4-204ENST00000357732 EFCAB2Q5VUJ9 269 aa23.29■■□□□ 1.32
RTN4-204ENST00000357732 SCAF11Q99590 1463 aaKnown RBP23.28■■□□□ 1.32
RTN4-204ENST00000357732 KIAA1210Q9ULL0 1709 aa23.28■■□□□ 1.32
RTN4-204ENST00000357732 TRAPPC8Q9Y2L5 1435 aa23.28■■□□□ 1.32
RTN4-204ENST00000357732 RTEL1-TNFRSF6BF6WH68 1400 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms