RNA–Protein interactions for RNA: ENST00000355354.11

CD47-201, Transcript of CD47 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD47, Length 5,020 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-201ENST00000355354 CAMSAP1Q5T5Y3 1602 aa8.89□□□□□ -0.99
CD47-201ENST00000355354 TROQ12816 1431 aaPredicted RBP8.89□□□□□ -0.99
CD47-201ENST00000355354 DENND4BO75064 1496 aaPredicted RBP8.89□□□□□ -0.99
CD47-201ENST00000355354 PRDM15P57071 1507 aaPredicted RBP8.88□□□□□ -0.99
CD47-201ENST00000355354 GPATCH8Q9UKJ3 1502 aaKnown RBP8.88□□□□□ -0.99
CD47-201ENST00000355354 ATP7AQ04656 1500 aa8.88□□□□□ -0.99
CD47-201ENST00000355354 SYNMO15061 1565 aa8.88□□□□□ -0.99
CD47-201ENST00000355354 CCER1Q8TC90 406 aaPredicted RBP8.88□□□□□ -0.99
CD47-201ENST00000355354 WDFY3Q8IZQ1 3526 aa8.87□□□□□ -0.99
CD47-201ENST00000355354 ITGAEP38570 1179 aa8.87□□□□□ -0.99
CD47-201ENST00000355354 SYCP2Q9BX26 1530 aa8.87□□□□□ -0.99
CD47-201ENST00000355354 ACIN1Q9UKV3 1341 aaKnown RBP8.87□□□□□ -0.99
CD47-201ENST00000355354 NWD1Q149M9 1564 aa8.87□□□□□ -0.99
CD47-201ENST00000355354 PLA2R1Q13018 1463 aa8.86□□□□□ -0.99
CD47-201ENST00000355354 DIEXFQ68CQ4 756 aaKnown RBP8.86□□□□□ -0.99
CD47-201ENST00000355354 UGGT1Q9NYU2 1555 aa8.86□□□□□ -0.99
CD47-201ENST00000355354 MED14O60244 1454 aa8.85□□□□□ -0.99
CD47-201ENST00000355354 KIAA1107Q9UPP5 1409 aa8.85□□□□□ -0.99
CD47-201ENST00000355354 SIN3AQ96ST3 1273 aa8.85□□□□□ -0.99
CD47-201ENST00000355354 NPATQ14207 1427 aa8.85□□□□□ -0.99
CD47-201ENST00000355354 TET3O43151 1660 aa8.85□□□□□ -0.99
CD47-201ENST00000355354 NCOA1Q15788 1441 aa8.84□□□□□ -0.99
CD47-201ENST00000355354 PTPRTO14522 1441 aa8.84□□□□□ -0.99
CD47-201ENST00000355354 EHBP1L1Q8N3D4 1523 aa8.83□□□□□ -1
CD47-201ENST00000355354 TRAPPC8Q9Y2L5 1435 aa8.83□□□□□ -1
CD47-201ENST00000355354 IQGAP1P46940 1657 aa8.83□□□□□ -1
CD47-201ENST00000355354 CHD2O14647 1828 aaKnown RBP8.82□□□□□ -1
CD47-201ENST00000355354 GCC2Q8IWJ2 1684 aa8.82□□□□□ -1
CD47-201ENST00000355354 LMTK2Q8IWU2 1503 aa8.82□□□□□ -1
CD47-201ENST00000355354 FMN1Q68DA7 1419 aa8.82□□□□□ -1
CD47-201ENST00000355354 P3H3Q8IVL6 736 aa8.81□□□□□ -1
CD47-201ENST00000355354 SKAP1Q86WV1 359 aa8.81□□□□□ -1
CD47-201ENST00000355354 NRXN3Q9Y4C0 1643 aa8.81□□□□□ -1
CD47-201ENST00000355354 CEP162Q5TB80 1403 aa8.81□□□□□ -1
CD47-201ENST00000355354 UNC13BO14795 1591 aa8.81□□□□□ -1
CD47-201ENST00000355354 PTPRKQ15262 1439 aa8.8□□□□□ -1
CD47-201ENST00000355354 IFT172Q9UG01 1749 aa8.8□□□□□ -1
CD47-201ENST00000355354 RTEL1-TNFRSF6BF6WH68 1400 aa8.79□□□□□ -1
CD47-201ENST00000355354 SLIT1O75093 1534 aa8.78□□□□□ -1
CD47-201ENST00000355354 BCANQ96GW7 911 aa8.78□□□□□ -1
CD47-201ENST00000355354 MUC3AQ02505 3323 aa8.78□□□□□ -1
CD47-201ENST00000355354 IQGAP3Q86VI3 1631 aa8.78□□□□□ -1
CD47-201ENST00000355354 ARHGAP23Q9P227 1491 aa8.77□□□□□ -1.01
CD47-201ENST00000355354 LOC400499M0QZD8 3231 aa8.77□□□□□ -1.01
CD47-201ENST00000355354 UBTFP17480 764 aaKnown RBP8.77□□□□□ -1.01
CD47-201ENST00000355354 ILDR1Q86SU0 546 aaPredicted RBP8.77□□□□□ -1.01
CD47-201ENST00000355354 EFCAB6Q5THR3 1501 aa8.76□□□□□ -1.01
CD47-201ENST00000355354 WDFY4Q6ZS81 3184 aa8.76□□□□□ -1.01
CD47-201ENST00000355354 TRIOO75962 3097 aa8.75□□□□□ -1.01
CD47-201ENST00000355354 ABCC3O15438 1527 aa8.75□□□□□ -1.01
CD47-201ENST00000355354 PTPN23Q9H3S7 1636 aa8.75□□□□□ -1.01
CD47-201ENST00000355354 ARID3CA6NKF2 412 aa8.75□□□□□ -1.01
CD47-201ENST00000355354 NCOA2Q15596 1464 aa8.75□□□□□ -1.01
CD47-201ENST00000355354 IRX6P78412 446 aaPredicted RBP8.74□□□□□ -1.01
CD47-201ENST00000355354 C11orf95C9JLR9 678 aaPredicted RBP8.74□□□□□ -1.01
CD47-201ENST00000355354 CSRNP3Q8WYN3 585 aa8.74□□□□□ -1.01
CD47-201ENST00000355354 SHANK2Q9UPX8 1470 aa8.74□□□□□ -1.01
CD47-201ENST00000355354 PZPP20742 1482 aa8.74□□□□□ -1.01
CD47-201ENST00000355354 ARHGAP5Q13017 1502 aa8.74□□□□□ -1.01
CD47-201ENST00000355354 TMEM131LA2VDJ0 1609 aa8.73□□□□□ -1.01
CD47-201ENST00000355354 C5orf42Q9H799 3197 aa8.73□□□□□ -1.01
CD47-201ENST00000355354 XRN1Q8IZH2 1706 aaKnown RBP8.73□□□□□ -1.01
CD47-201ENST00000355354 E9PCH4 1651 aa8.73□□□□□ -1.01
CD47-201ENST00000355354 DIP2AQ14689 1571 aa8.73□□□□□ -1.01
CD47-201ENST00000355354 SCAPERQ9BY12 1400 aa8.72□□□□□ -1.01
CD47-201ENST00000355354 CNGB1Q14028 1251 aaPredicted RBP8.72□□□□□ -1.01
CD47-201ENST00000355354 FOXD1Q16676 465 aa8.72□□□□□ -1.01
CD47-201ENST00000355354 MSH5O43196 834 aa8.71□□□□□ -1.02
CD47-201ENST00000355354 CELSR3Q9NYQ7 3312 aa8.7□□□□□ -1.02
CD47-201ENST00000355354 CLIP1P30622 1438 aa8.7□□□□□ -1.02
CD47-201ENST00000355354 CRYBG1Q9Y4K1 1723 aa8.69□□□□□ -1.02
CD47-201ENST00000355354 ADGRL2O95490 1459 aa8.69□□□□□ -1.02
CD47-201ENST00000355354 RAPGEF3O95398 923 aa8.69□□□□□ -1.02
CD47-201ENST00000355354 MARF1Q9Y4F3 1742 aaKnown RBP8.69□□□□□ -1.02
CD47-201ENST00000355354 SHPRHQ149N8 1683 aa8.69□□□□□ -1.02
CD47-201ENST00000355354 NHSL1Q5SYE7 1610 aa8.68□□□□□ -1.02
CD47-201ENST00000355354 A2ML1A8K2U0 1454 aa8.68□□□□□ -1.02
CD47-201ENST00000355354 CNTLNQ9NXG0 1405 aa8.68□□□□□ -1.02
CD47-201ENST00000355354 TRIM52Q96A61 297 aa8.68□□□□□ -1.02
CD47-201ENST00000355354 ARHGAP31Q2M1Z3 1444 aa8.67□□□□□ -1.02
CD47-201ENST00000355354 MED1Q15648 1581 aaPredicted RBP8.67□□□□□ -1.02
CD47-201ENST00000355354 A2MP01023 1474 aa8.67□□□□□ -1.02
CD47-201ENST00000355354 PLEKHH2Q8IVE3 1493 aa8.67□□□□□ -1.02
CD47-201ENST00000355354 PRAG1Q86YV5 1406 aa8.67□□□□□ -1.02
CD47-201ENST00000355354 CPS1P31327 1500 aa8.66□□□□□ -1.02
CD47-201ENST00000355354 NPM1P06748 294 aaKnown RBP eCLIP8.65□□□□□ -1.03
CD47-201ENST00000355354 LRRC9Q6ZRR7 1453 aa8.64□□□□□ -1.03
CD47-201ENST00000355354 COL16A1Q07092 1604 aaPredicted RBP8.64□□□□□ -1.03
CD47-201ENST00000355354 SPHKAPQ2M3C7 1700 aa8.64□□□□□ -1.03
CD47-201ENST00000355354 ABCA3Q99758 1704 aa8.63□□□□□ -1.03
CD47-201ENST00000355354 FBXO41Q8TF61 875 aa8.63□□□□□ -1.03
CD47-201ENST00000355354 KNDC1Q76NI1 1749 aa8.62□□□□□ -1.03
CD47-201ENST00000355354 COL22A1Q8NFW1 1626 aaPredicted RBP8.62□□□□□ -1.03
CD47-201ENST00000355354 PPLO60437 1756 aa8.62□□□□□ -1.03
CD47-201ENST00000355354 DHX57Q6P158 1386 aaKnown RBP8.62□□□□□ -1.03
CD47-201ENST00000355354 ERVK-7P63135 1459 aa8.62□□□□□ -1.03
CD47-201ENST00000355354 CCDC141Q6ZP82 1450 aa8.62□□□□□ -1.03
CD47-201ENST00000355354 FRYLO94915 3013 aa8.61□□□□□ -1.03
CD47-201ENST00000355354 TSHZ2Q9NRE2 1034 aa8.61□□□□□ -1.03
CD47-201ENST00000355354 NALCNQ8IZF0 1738 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms