RNA–Protein interactions for RNA: ENST00000355354.11

CD47-201, Transcript of CD47 molecule, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CD47, Length 5,020 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD47-201ENST00000355354 NISCHQ9Y2I1 1504 aa14.19□□□□□ -0.14
CD47-201ENST00000355354 CCDC180Q9P1Z9 1646 aa13.21□□□□□ -0.29
CD47-201ENST00000355354 UNC13AQ9UPW8 1703 aa12.59□□□□□ -0.39
CD47-201ENST00000355354 MYO15BQ96JP2 1530 aa12.31□□□□□ -0.44
CD47-201ENST00000355354 ABCC9O60706 1549 aa12.29□□□□□ -0.44
CD47-201ENST00000355354 BICRAQ9NZM4 1560 aa12.22□□□□□ -0.45
CD47-201ENST00000355354 NACADO15069 1562 aa12.14□□□□□ -0.47
CD47-201ENST00000355354 RB1CC1Q8TDY2 1594 aa12.1□□□□□ -0.47
CD47-201ENST00000355354 DCAF1Q9Y4B6 1507 aa12.07□□□□□ -0.48
CD47-201ENST00000355354 SHROOM4Q9ULL8 1493 aa11.96□□□□□ -0.5
CD47-201ENST00000355354 ZCCHC6Q5VYS8 1495 aaKnown RBP11.89□□□□□ -0.51
CD47-201ENST00000355354 DNAJC5BQ9UF47 199 aa11.77□□□□□ -0.53
CD47-201ENST00000355354 CC2D2AQ9P2K1 1620 aa11.6□□□□□ -0.55
CD47-201ENST00000355354 EIF4G1Q04637 1599 aaKnown RBP11.58□□□□□ -0.56
CD47-201ENST00000355354 PEG3Q9GZU2 1588 aa11.43□□□□□ -0.58
CD47-201ENST00000355354 SCRIBQ14160 1630 aa11.41□□□□□ -0.58
CD47-201ENST00000355354 THOC2Q8NI27 1593 aaKnown RBP11.24□□□□□ -0.61
CD47-201ENST00000355354 HMGXB3Q12766 1538 aa11.23□□□□□ -0.61
CD47-201ENST00000355354 SMARCA4P51532 1647 aa11.2□□□□□ -0.62
CD47-201ENST00000355354 CECR2Q9BXF3 1484 aa11.19□□□□□ -0.62
CD47-201ENST00000355354 PRDM2Q13029 1718 aa11.18□□□□□ -0.62
CD47-201ENST00000355354 NCAPD3P42695 1498 aa11.13□□□□□ -0.63
CD47-201ENST00000355354 SMARCA2P51531 1590 aa11.12□□□□□ -0.63
CD47-201ENST00000355354 KIF21AQ7Z4S6 1674 aa11.08□□□□□ -0.64
CD47-201ENST00000355354 PABPN1Q86U42 306 aaKnown RBP eCLIP11.07□□□□□ -0.64
CD47-201ENST00000355354 CUX2O14529 1486 aa11.01□□□□□ -0.65
CD47-201ENST00000355354 ATAD2BQ9ULI0 1458 aa11□□□□□ -0.65
CD47-201ENST00000355354 LAMC3Q9Y6N6 1575 aa10.97□□□□□ -0.65
CD47-201ENST00000355354 BAZ1AQ9NRL2 1556 aaPredicted RBP10.93□□□□□ -0.66
CD47-201ENST00000355354 SRCAPQ6ZRS2 3230 aa10.9□□□□□ -0.66
CD47-201ENST00000355354 WDR62O43379 1518 aa10.9□□□□□ -0.66
CD47-201ENST00000355354 MROH2BQ7Z745 1585 aa10.88□□□□□ -0.67
CD47-201ENST00000355354 WIZO95785 1651 aa10.84□□□□□ -0.67
CD47-201ENST00000355354 GOLGB1Q14789 3259 aaKnown RBP10.81□□□□□ -0.68
CD47-201ENST00000355354 NESP48681 1621 aa10.79□□□□□ -0.68
CD47-201ENST00000355354 WDR97A6NE52 1622 aa10.76□□□□□ -0.69
CD47-201ENST00000355354 UTRNP46939 3433 aa10.7□□□□□ -0.7
CD47-201ENST00000355354 TOP2AP11388 1531 aaKnown RBP10.68□□□□□ -0.7
CD47-201ENST00000355354 DNAJC5Q9H3Z4 198 aa10.68□□□□□ -0.7
CD47-201ENST00000355354 PPARGC1BQ86YN6 1023 aaKnown RBP10.67□□□□□ -0.7
CD47-201ENST00000355354 TARBP1Q13395 1621 aaKnown RBP10.67□□□□□ -0.7
CD47-201ENST00000355354 CFTRP13569 1480 aa10.64□□□□□ -0.71
CD47-201ENST00000355354 BAZ1BQ9UIG0 1483 aaKnown RBP10.64□□□□□ -0.71
CD47-201ENST00000355354 URB2Q14146 1524 aaKnown RBP10.58□□□□□ -0.72
CD47-201ENST00000355354 MRC2Q9UBG0 1479 aa10.56□□□□□ -0.72
CD47-201ENST00000355354 SUPT5HO00267 1087 aaKnown RBP10.53□□□□□ -0.72
CD47-201ENST00000355354 CHD1O14646 1710 aa10.52□□□□□ -0.72
CD47-201ENST00000355354 PCNTO95613 3336 aa10.52□□□□□ -0.73
CD47-201ENST00000355354 RSF1Q96T23 1441 aaPredicted RBP10.5□□□□□ -0.73
CD47-201ENST00000355354 EIF4G3O43432 1585 aaKnown RBP10.49□□□□□ -0.73
CD47-201ENST00000355354 RIMBP3CA6NJZ7 1639 aa10.47□□□□□ -0.73
CD47-201ENST00000355354 RIMBP3BA6NNM3 1639 aa10.47□□□□□ -0.73
CD47-201ENST00000355354 RIMBP3Q9UFD9 1639 aa10.47□□□□□ -0.73
CD47-201ENST00000355354 CADPSQ9ULU8 1353 aa10.47□□□□□ -0.73
CD47-201ENST00000355354 CLASP1Q7Z460 1538 aa10.47□□□□□ -0.73
CD47-201ENST00000355354 PBRM1Q86U86 1689 aa10.44□□□□□ -0.74
CD47-201ENST00000355354 ABCA5Q8WWZ7 1642 aa10.43□□□□□ -0.74
CD47-201ENST00000355354 LOC105371045A0A1W2PR82 267 aa10.43□□□□□ -0.74
CD47-201ENST00000355354 DNMBPQ6XZF7 1577 aa10.42□□□□□ -0.74
CD47-201ENST00000355354 SHROOM2Q13796 1616 aa10.41□□□□□ -0.74
CD47-201ENST00000355354 FANCD2Q9BXW9 1451 aa10.4□□□□□ -0.75
CD47-201ENST00000355354 BIVM-ERCC5R4GMW8 1640 aa10.39□□□□□ -0.75
CD47-201ENST00000355354 PDS5BQ9NTI5 1447 aa10.38□□□□□ -0.75
CD47-201ENST00000355354 CEP164Q9UPV0 1460 aa10.37□□□□□ -0.75
CD47-201ENST00000355354 CCDC88BA6NC98 1476 aa10.36□□□□□ -0.75
CD47-201ENST00000355354 ERCC6Q03468 1493 aa10.36□□□□□ -0.75
CD47-201ENST00000355354 TOPBP1Q92547 1522 aa10.35□□□□□ -0.75
CD47-201ENST00000355354 DCAF8L2P0C7V8 631 aa10.35□□□□□ -0.75
CD47-201ENST00000355354 EHMT2Q96KQ7 1210 aa10.34□□□□□ -0.75
CD47-201ENST00000355354 KIF13AQ9H1H9 1805 aa10.3□□□□□ -0.76
CD47-201ENST00000355354 ZNF608Q9ULD9 1512 aaPredicted RBP10.3□□□□□ -0.76
CD47-201ENST00000355354 CUX1P39880 1505 aa10.27□□□□□ -0.77
CD47-201ENST00000355354 IFT140Q96RY7 1462 aa10.26□□□□□ -0.77
CD47-201ENST00000355354 ARHGEF11O15085 1522 aa10.24□□□□□ -0.77
CD47-201ENST00000355354 CENPFP49454 3210 aa10.24□□□□□ -0.77
CD47-201ENST00000355354 POLA1P09884 1462 aaPredicted RBP10.22□□□□□ -0.77
CD47-201ENST00000355354 ABCC8Q09428 1581 aa10.21□□□□□ -0.77
CD47-201ENST00000355354 ARAP1Q96P48 1450 aa10.19□□□□□ -0.78
CD47-201ENST00000355354 TOP2BQ02880 1626 aa10.19□□□□□ -0.78
CD47-201ENST00000355354 ADAMTS12P58397 1594 aa10.18□□□□□ -0.78
CD47-201ENST00000355354 PPRC1Q5VV67 1664 aaKnown RBP10.15□□□□□ -0.78
CD47-201ENST00000355354 CEP170Q5SW79 1584 aa10.14□□□□□ -0.79
CD47-201ENST00000355354 ABCA10Q8WWZ4 1543 aa10.13□□□□□ -0.79
CD47-201ENST00000355354 PCGF6Q9BYE7 350 aa10.13□□□□□ -0.79
CD47-201ENST00000355354 SYNJ1O43426 1573 aa10.12□□□□□ -0.79
CD47-201ENST00000355354 RUSC2Q8N2Y8 1516 aa10.11□□□□□ -0.79
CD47-201ENST00000355354 CHIC1Q5VXU3 224 aa10.11□□□□□ -0.79
CD47-201ENST00000355354 LAMA3Q16787 3333 aa10.1□□□□□ -0.79
CD47-201ENST00000355354 ERCC6L2Q5T890 1561 aa10.09□□□□□ -0.79
CD47-201ENST00000355354 MAGI1Q96QZ7 1491 aaPredicted RBP10.09□□□□□ -0.79
CD47-201ENST00000355354 FGD5Q6ZNL6 1462 aa10.05□□□□□ -0.8
CD47-201ENST00000355354 NUP160Q12769 1436 aa10.04□□□□□ -0.8
CD47-201ENST00000355354 USP34Q70CQ2 3546 aa10.03□□□□□ -0.8
CD47-201ENST00000355354 ERICH3Q5RHP9 1530 aa10.03□□□□□ -0.8
CD47-201ENST00000355354 RAD54L2Q9Y4B4 1467 aa9.99□□□□□ -0.81
CD47-201ENST00000355354 SYNJ2O15056 1496 aa9.99□□□□□ -0.81
CD47-201ENST00000355354 ADCY10Q96PN6 1610 aa9.99□□□□□ -0.81
CD47-201ENST00000355354 SNAPC4Q5SXM2 1469 aa9.98□□□□□ -0.81
CD47-201ENST00000355354 AQRO60306 1485 aaKnown RBP eCLIP9.96□□□□□ -0.82
CD47-201ENST00000355354 MAPKBP1O60336 1514 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms