RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ARID4BQ4LE39 1312 aaPredicted RBP29.96■■■□□ 2.39
SHMT1-202ENST00000352886 DHX29Q7Z478 1369 aaKnown RBP29.95■■■□□ 2.39
SHMT1-202ENST00000352886 CCDC144AA2RUR9 1427 aa29.91■■■□□ 2.38
SHMT1-202ENST00000352886 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.9■■■□□ 2.38
SHMT1-202ENST00000352886 PLCH2O75038 1416 aa29.89■■■□□ 2.37
SHMT1-202ENST00000352886 IQGAP3Q86VI3 1631 aa29.88■■■□□ 2.37
SHMT1-202ENST00000352886 UHRF1BP1LA0JNW5 1464 aa29.88■■■□□ 2.37
SHMT1-202ENST00000352886 DUOX2Q9NRD8 1548 aa29.87■■■□□ 2.37
SHMT1-202ENST00000352886 ROCK2O75116 1388 aaKnown RBP29.86■■■□□ 2.37
SHMT1-202ENST00000352886 ST20-MTHFSA0A0A6YYL1 179 aa29.85■■■□□ 2.37
SHMT1-202ENST00000352886 PLA2R1Q13018 1463 aa29.85■■■□□ 2.37
SHMT1-202ENST00000352886 CNGB1Q14028 1251 aaPredicted RBP29.84■■■□□ 2.37
SHMT1-202ENST00000352886 ZBED9Q6R2W3 1325 aa29.82■■■□□ 2.36
SHMT1-202ENST00000352886 EFCAB2Q5VUJ9 269 aa29.82■■■□□ 2.36
SHMT1-202ENST00000352886 TRPM1Q7Z4N2 1603 aa29.82■■■□□ 2.36
SHMT1-202ENST00000352886 PRAG1Q86YV5 1406 aa29.81■■■□□ 2.36
SHMT1-202ENST00000352886 ABCC1P33527 1531 aa29.81■■■□□ 2.36
SHMT1-202ENST00000352886 ERBINQ96RT1 1412 aa29.8■■■□□ 2.36
SHMT1-202ENST00000352886 RGL3Q3MIN7 710 aa29.79■■■□□ 2.36
SHMT1-202ENST00000352886 MAGI2Q86UL8 1455 aa29.78■■■□□ 2.36
SHMT1-202ENST00000352886 A2MP01023 1474 aa29.75■■■□□ 2.35
SHMT1-202ENST00000352886 TRAPPC8Q9Y2L5 1435 aa29.75■■■□□ 2.35
SHMT1-202ENST00000352886 IRX6P78412 446 aaPredicted RBP29.75■■■□□ 2.35
SHMT1-202ENST00000352886 E9PCH4 1651 aa29.71■■■□□ 2.35
SHMT1-202ENST00000352886 ATP10AO60312 1499 aa29.7■■■□□ 2.35
SHMT1-202ENST00000352886 NBPF1Q3BBV0 1214 aa29.69■■■□□ 2.34
SHMT1-202ENST00000352886 GPRASP1Q5JY77 1395 aa29.66■■■□□ 2.34
SHMT1-202ENST00000352886 ARAP3Q8WWN8 1544 aa29.65■■■□□ 2.34
SHMT1-202ENST00000352886 LAMC1P11047 1609 aa29.65■■■□□ 2.34
SHMT1-202ENST00000352886 SPAG9O60271 1321 aaKnown RBP29.64■■■□□ 2.34
SHMT1-202ENST00000352886 EIF2AK4Q9P2K8 1649 aaKnown RBP29.64■■■□□ 2.33
SHMT1-202ENST00000352886 PRDM15P57071 1507 aaPredicted RBP29.62■■■□□ 2.33
SHMT1-202ENST00000352886 ZFYVE16Q7Z3T8 1539 aa29.62■■■□□ 2.33
SHMT1-202ENST00000352886 AFAP1Q8N556 730 aa29.62■■■□□ 2.33
SHMT1-202ENST00000352886 TMC1Q8TDI8 760 aa29.61■■■□□ 2.33
SHMT1-202ENST00000352886 RTEL1-TNFRSF6BF6WH68 1400 aa29.6■■■□□ 2.33
SHMT1-202ENST00000352886 WDR7Q9Y4E6 1490 aa29.6■■■□□ 2.33
SHMT1-202ENST00000352886 ERICH6BQ5W0A0 696 aa29.6■■■□□ 2.33
SHMT1-202ENST00000352886 PNISRQ8TF01 805 aaKnown RBP29.59■■■□□ 2.33
SHMT1-202ENST00000352886 KTN1Q86UP2 1357 aaKnown RBP29.58■■■□□ 2.33
SHMT1-202ENST00000352886 RALBP1Q15311 655 aa29.56■■■□□ 2.32
SHMT1-202ENST00000352886 MYBBP1AQ9BQG0 1328 aaKnown RBP29.56■■■□□ 2.32
SHMT1-202ENST00000352886 ABCA9Q8IUA7 1624 aa29.54■■■□□ 2.32
SHMT1-202ENST00000352886 COL17A1Q9UMD9 1497 aaPredicted RBP29.54■■■□□ 2.32
SHMT1-202ENST00000352886 SMG6Q86US8 1419 aaKnown RBP29.53■■■□□ 2.32
SHMT1-202ENST00000352886 FANCAO15360 1455 aa29.53■■■□□ 2.32
SHMT1-202ENST00000352886 BRD4O60885 1362 aaPredicted RBP29.52■■■□□ 2.32
SHMT1-202ENST00000352886 DEPDC5O75140 1603 aa29.51■■■□□ 2.31
SHMT1-202ENST00000352886 TESK2Q96S53 571 aa29.51■■■□□ 2.31
SHMT1-202ENST00000352886 RNF17Q9BXT8 1623 aaKnown RBP29.5■■■□□ 2.31
SHMT1-202ENST00000352886 PPP4R2Q9NY27 417 aa29.5■■■□□ 2.31
SHMT1-202ENST00000352886 DISP3Q9P2K9 1392 aa29.5■■■□□ 2.31
SHMT1-202ENST00000352886 ATP7AQ04656 1500 aa29.49■■■□□ 2.31
SHMT1-202ENST00000352886 SPHKAPQ2M3C7 1700 aa29.49■■■□□ 2.31
SHMT1-202ENST00000352886 INO80Q9ULG1 1556 aaPredicted RBP29.49■■■□□ 2.31
SHMT1-202ENST00000352886 TRPM2O94759 1503 aa29.49■■■□□ 2.31
SHMT1-202ENST00000352886 LRPPRCP42704 1394 aaKnown RBP29.47■■■□□ 2.31
SHMT1-202ENST00000352886 CEP152O94986 1710 aa29.47■■■□□ 2.31
SHMT1-202ENST00000352886 RBM19Q9Y4C8 960 aaKnown RBP29.46■■■□□ 2.31
SHMT1-202ENST00000352886 NUDCQ9Y266 331 aa29.46■■■□□ 2.31
SHMT1-202ENST00000352886 SENP3-EIF4A1A0A087X0R7 540 aa29.45■■■□□ 2.3
SHMT1-202ENST00000352886 PARD3Q8TEW0 1356 aa29.45■■■□□ 2.3
SHMT1-202ENST00000352886 TET3O43151 1660 aa29.44■■■□□ 2.3
SHMT1-202ENST00000352886 MADDQ8WXG6 1647 aa29.44■■■□□ 2.3
SHMT1-202ENST00000352886 PER1O15534 1290 aaPredicted RBP29.44■■■□□ 2.3
SHMT1-202ENST00000352886 ADGRL1O94910 1474 aa29.43■■■□□ 2.3
SHMT1-202ENST00000352886 CLTCL1P53675 1640 aa29.42■■■□□ 2.3
SHMT1-202ENST00000352886 PTPRTO14522 1441 aa29.42■■■□□ 2.3
SHMT1-202ENST00000352886 TMF1P82094 1093 aa29.41■■■□□ 2.3
SHMT1-202ENST00000352886 SCAPERQ9BY12 1400 aa29.4■■■□□ 2.3
SHMT1-202ENST00000352886 NLRP13Q86W25 1043 aa29.4■■■□□ 2.3
SHMT1-202ENST00000352886 MYT1LQ9UL68 1186 aa29.4■■■□□ 2.3
SHMT1-202ENST00000352886 ASXL2Q76L83 1435 aa29.39■■■□□ 2.3
SHMT1-202ENST00000352886 KANK1Q14678 1352 aa29.39■■■□□ 2.3
SHMT1-202ENST00000352886 VWDEQ8N2E2 1590 aa29.38■■■□□ 2.29
SHMT1-202ENST00000352886 KIF3BO15066 747 aa29.36■■■□□ 2.29
SHMT1-202ENST00000352886 IQGAP1P46940 1657 aa29.36■■■□□ 2.29
SHMT1-202ENST00000352886 WASHC2CQ9Y4E1 1318 aa29.35■■■□□ 2.29
SHMT1-202ENST00000352886 PANK3Q9H999 370 aa29.35■■■□□ 2.29
SHMT1-202ENST00000352886 B4GALNT3Q6L9W6 998 aa29.34■■■□□ 2.29
SHMT1-202ENST00000352886 CC2D1BQ5T0F9 858 aaKnown RBP29.32■■■□□ 2.28
SHMT1-202ENST00000352886 MROH1Q8NDA8 1641 aa29.31■■■□□ 2.28
SHMT1-202ENST00000352886 RNF123Q5XPI4 1314 aa29.31■■■□□ 2.28
SHMT1-202ENST00000352886 STAC3Q96MF2 364 aa29.3■■■□□ 2.28
SHMT1-202ENST00000352886 KIDINS220Q9ULH0 1771 aa29.27■■■□□ 2.28
SHMT1-202ENST00000352886 SCAF11Q99590 1463 aaKnown RBP29.26■■■□□ 2.27
SHMT1-202ENST00000352886 NEURL4Q96JN8 1562 aa29.22■■■□□ 2.27
SHMT1-202ENST00000352886 UGGT1Q9NYU2 1555 aa29.22■■■□□ 2.27
SHMT1-202ENST00000352886 KIAA1210Q9ULL0 1709 aa29.21■■■□□ 2.27
SHMT1-202ENST00000352886 ZNF518AQ6AHZ1 1483 aa29.21■■■□□ 2.27
SHMT1-202ENST00000352886 EFCAB6Q5THR3 1501 aa29.2■■■□□ 2.27
SHMT1-202ENST00000352886 KIF1BO60333 1816 aa29.2■■■□□ 2.26
SHMT1-202ENST00000352886 NPM1P06748 294 aaKnown RBP eCLIP29.19■■■□□ 2.26
SHMT1-202ENST00000352886 SALL2Q9Y467 1007 aaPredicted RBP29.19■■■□□ 2.26
SHMT1-202ENST00000352886 PPRC1Q5VV67 1664 aaKnown RBP29.17■■■□□ 2.26
SHMT1-202ENST00000352886 SYNMO15061 1565 aa29.16■■■□□ 2.26
SHMT1-202ENST00000352886 CDCA8Q53HL2 280 aa29.16■■■□□ 2.26
SHMT1-202ENST00000352886 MAP3K4Q9Y6R4 1608 aa29.16■■■□□ 2.26
SHMT1-202ENST00000352886 EIF3AQ14152 1382 aaKnown RBP29.14■■■□□ 2.26
SHMT1-202ENST00000352886 OSCARQ8IYS5 282 aa29.14■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms