RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 E9PCH4 1651 aa19.96■□□□□ 0.79
TDP2-201ENST00000341060 TRPM1Q7Z4N2 1603 aa19.95■□□□□ 0.78
TDP2-201ENST00000341060 ERICH6BQ5W0A0 696 aa19.94■□□□□ 0.78
TDP2-201ENST00000341060 IQGAP3Q86VI3 1631 aa19.94■□□□□ 0.78
TDP2-201ENST00000341060 CARD11Q9BXL7 1154 aa19.93■□□□□ 0.78
TDP2-201ENST00000341060 ZCCHC11Q5TAX3 1644 aaKnown RBP19.92■□□□□ 0.78
TDP2-201ENST00000341060 PLEKHH2Q8IVE3 1493 aa19.92■□□□□ 0.78
TDP2-201ENST00000341060 CCDC144AA2RUR9 1427 aa19.89■□□□□ 0.77
TDP2-201ENST00000341060 DCAF11Q8TEB1 546 aa19.88■□□□□ 0.77
TDP2-201ENST00000341060 LAMC1P11047 1609 aa19.88■□□□□ 0.77
TDP2-201ENST00000341060 IRX6P78412 446 aaPredicted RBP19.87■□□□□ 0.77
TDP2-201ENST00000341060 CYB5RLQ6IPT4 315 aa19.87■□□□□ 0.77
TDP2-201ENST00000341060 POLR3GLQ9BT43 218 aa19.87■□□□□ 0.77
TDP2-201ENST00000341060 PRAG1Q86YV5 1406 aa19.87■□□□□ 0.77
TDP2-201ENST00000341060 MAGI2Q86UL8 1455 aa19.86■□□□□ 0.77
TDP2-201ENST00000341060 KDM2AQ9Y2K7 1162 aa19.86■□□□□ 0.77
TDP2-201ENST00000341060 DUOX2Q9NRD8 1548 aa19.86■□□□□ 0.77
TDP2-201ENST00000341060 ST20-MTHFSA0A0A6YYL1 179 aa19.85■□□□□ 0.77
TDP2-201ENST00000341060 RBM19Q9Y4C8 960 aaKnown RBP19.85■□□□□ 0.77
TDP2-201ENST00000341060 PLA2R1Q13018 1463 aa19.84■□□□□ 0.77
TDP2-201ENST00000341060 RIMBP3CA6NJZ7 1639 aa19.83■□□□□ 0.77
TDP2-201ENST00000341060 RIMBP3BA6NNM3 1639 aa19.83■□□□□ 0.77
TDP2-201ENST00000341060 RIMBP3Q9UFD9 1639 aa19.83■□□□□ 0.77
TDP2-201ENST00000341060 KTN1Q86UP2 1357 aaKnown RBP19.82■□□□□ 0.76
TDP2-201ENST00000341060 ERBINQ96RT1 1412 aa19.82■□□□□ 0.76
TDP2-201ENST00000341060 EIF2AK4Q9P2K8 1649 aaKnown RBP19.82■□□□□ 0.76
TDP2-201ENST00000341060 NPM1P06748 294 aaKnown RBP eCLIP19.82■□□□□ 0.76
TDP2-201ENST00000341060 SMG6Q86US8 1419 aaKnown RBP19.81■□□□□ 0.76
TDP2-201ENST00000341060 ATP10AO60312 1499 aa19.81■□□□□ 0.76
TDP2-201ENST00000341060 A2MP01023 1474 aa19.81■□□□□ 0.76
TDP2-201ENST00000341060 PPP4R2Q9NY27 417 aa19.81■□□□□ 0.76
TDP2-201ENST00000341060 ABCC1P33527 1531 aa19.8■□□□□ 0.76
TDP2-201ENST00000341060 PRDM15P57071 1507 aaPredicted RBP19.8■□□□□ 0.76
TDP2-201ENST00000341060 PLCH2O75038 1416 aa19.8■□□□□ 0.76
TDP2-201ENST00000341060 GPRASP1Q5JY77 1395 aa19.8■□□□□ 0.76
TDP2-201ENST00000341060 ASXL2Q76L83 1435 aa19.77■□□□□ 0.75
TDP2-201ENST00000341060 WDR7Q9Y4E6 1490 aa19.77■□□□□ 0.75
TDP2-201ENST00000341060 PNISRQ8TF01 805 aaKnown RBP19.76■□□□□ 0.75
TDP2-201ENST00000341060 CNGB1Q14028 1251 aaPredicted RBP19.76■□□□□ 0.75
TDP2-201ENST00000341060 BRD4O60885 1362 aaPredicted RBP19.76■□□□□ 0.75
TDP2-201ENST00000341060 RNF17Q9BXT8 1623 aaKnown RBP19.75■□□□□ 0.75
TDP2-201ENST00000341060 LRPPRCP42704 1394 aaKnown RBP19.75■□□□□ 0.75
TDP2-201ENST00000341060 RALBP1Q15311 655 aa19.74■□□□□ 0.75
TDP2-201ENST00000341060 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.74■□□□□ 0.751e-7■□□□□ 8.2
TDP2-201ENST00000341060 MYBBP1AQ9BQG0 1328 aaKnown RBP19.74■□□□□ 0.75
TDP2-201ENST00000341060 COL17A1Q9UMD9 1497 aaPredicted RBP19.73■□□□□ 0.75
TDP2-201ENST00000341060 TMC1Q8TDI8 760 aa19.73■□□□□ 0.75
TDP2-201ENST00000341060 ARAP3Q8WWN8 1544 aa19.73■□□□□ 0.75
TDP2-201ENST00000341060 ANP32EQ9BTT0 268 aa19.73■□□□□ 0.75
TDP2-201ENST00000341060 NUDCQ9Y266 331 aa19.73■□□□□ 0.75
TDP2-201ENST00000341060 RGL3Q3MIN7 710 aa19.72■□□□□ 0.75
TDP2-201ENST00000341060 EFCAB2Q5VUJ9 269 aa19.7■□□□□ 0.74
TDP2-201ENST00000341060 NBPF1Q3BBV0 1214 aa19.7■□□□□ 0.74
TDP2-201ENST00000341060 CEP152O94986 1710 aa19.69■□□□□ 0.74
TDP2-201ENST00000341060 RNF123Q5XPI4 1314 aa19.69■□□□□ 0.74
TDP2-201ENST00000341060 DEPDC5O75140 1603 aa19.69■□□□□ 0.74
TDP2-201ENST00000341060 TRAPPC8Q9Y2L5 1435 aa19.69■□□□□ 0.74
TDP2-201ENST00000341060 ZFYVE16Q7Z3T8 1539 aa19.68■□□□□ 0.74
TDP2-201ENST00000341060 PARD3Q8TEW0 1356 aa19.68■□□□□ 0.74
TDP2-201ENST00000341060 SPHKAPQ2M3C7 1700 aa19.68■□□□□ 0.74
TDP2-201ENST00000341060 RTEL1-TNFRSF6BF6WH68 1400 aa19.66■□□□□ 0.74
TDP2-201ENST00000341060 MADDQ8WXG6 1647 aa19.66■□□□□ 0.74
TDP2-201ENST00000341060 IQGAP1P46940 1657 aa19.65■□□□□ 0.74
TDP2-201ENST00000341060 TRPM2O94759 1503 aa19.65■□□□□ 0.74
TDP2-201ENST00000341060 TESK2Q96S53 571 aa19.64■□□□□ 0.74
TDP2-201ENST00000341060 DISP3Q9P2K9 1392 aa19.64■□□□□ 0.73
TDP2-201ENST00000341060 B4GALNT3Q6L9W6 998 aa19.64■□□□□ 0.73
TDP2-201ENST00000341060 PER1O15534 1290 aaPredicted RBP19.63■□□□□ 0.73
TDP2-201ENST00000341060 NLRP13Q86W25 1043 aa19.63■□□□□ 0.73
TDP2-201ENST00000341060 ABCA9Q8IUA7 1624 aa19.63■□□□□ 0.73
TDP2-201ENST00000341060 TET3O43151 1660 aa19.63■□□□□ 0.73
TDP2-201ENST00000341060 WASHC2CQ9Y4E1 1318 aa19.62■□□□□ 0.73
TDP2-201ENST00000341060 FANCIQ9NVI1 1328 aa19.62■□□□□ 0.73
TDP2-201ENST00000341060 INO80Q9ULG1 1556 aaPredicted RBP19.62■□□□□ 0.73
TDP2-201ENST00000341060 SPAG9O60271 1321 aaKnown RBP19.6■□□□□ 0.73
TDP2-201ENST00000341060 CLTCL1P53675 1640 aa19.59■□□□□ 0.73
TDP2-201ENST00000341060 ZMYM4Q5VZL5 1548 aa19.59■□□□□ 0.73
TDP2-201ENST00000341060 ATP7AQ04656 1500 aa19.58■□□□□ 0.72
TDP2-201ENST00000341060 VWDEQ8N2E2 1590 aa19.57■□□□□ 0.72
TDP2-201ENST00000341060 PTPRTO14522 1441 aa19.57■□□□□ 0.72
TDP2-201ENST00000341060 TMF1P82094 1093 aa19.57■□□□□ 0.72
TDP2-201ENST00000341060 KIAA1210Q9ULL0 1709 aa19.55■□□□□ 0.72
TDP2-201ENST00000341060 NEURL4Q96JN8 1562 aa19.55■□□□□ 0.72
TDP2-201ENST00000341060 INSRP06213 1382 aa19.55■□□□□ 0.72
TDP2-201ENST00000341060 FANCAO15360 1455 aa19.54■□□□□ 0.72
TDP2-201ENST00000341060 SENP3-EIF4A1A0A087X0R7 540 aa19.54■□□□□ 0.72
TDP2-201ENST00000341060 AFAP1Q8N556 730 aa19.54■□□□□ 0.72
TDP2-201ENST00000341060 CD109Q6YHK3 1445 aa19.54■□□□□ 0.72
TDP2-201ENST00000341060 MSH5O43196 834 aa19.52■□□□□ 0.72
TDP2-201ENST00000341060 STAC3Q96MF2 364 aa19.52■□□□□ 0.72
TDP2-201ENST00000341060 PANK3Q9H999 370 aa19.52■□□□□ 0.72
TDP2-201ENST00000341060 SCAPERQ9BY12 1400 aa19.51■□□□□ 0.71
TDP2-201ENST00000341060 SYNMO15061 1565 aa19.51■□□□□ 0.71
TDP2-201ENST00000341060 MROH1Q8NDA8 1641 aa19.5■□□□□ 0.71
TDP2-201ENST00000341060 BLMP54132 1417 aaPredicted RBP19.5■□□□□ 0.71
TDP2-201ENST00000341060 PDE3BQ13370 1112 aa19.49■□□□□ 0.71
TDP2-201ENST00000341060 MYOM1P52179 1685 aa19.49■□□□□ 0.71
TDP2-201ENST00000341060 SCAF11Q99590 1463 aaKnown RBP19.49■□□□□ 0.71
TDP2-201ENST00000341060 CC2D1BQ5T0F9 858 aaKnown RBP19.49■□□□□ 0.71
TDP2-201ENST00000341060 KIF1BO60333 1816 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms