RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 CARD11Q9BXL7 1154 aa16.75■□□□□ 0.27
VPS33B-201ENST00000333371 SYCP2Q9BX26 1530 aa16.74■□□□□ 0.27
VPS33B-201ENST00000333371 UHRF1BP1LA0JNW5 1464 aa16.72■□□□□ 0.27
VPS33B-201ENST00000333371 ST20-MTHFSA0A0A6YYL1 179 aa16.72■□□□□ 0.27
VPS33B-201ENST00000333371 DCAF11Q8TEB1 546 aa16.71■□□□□ 0.27
VPS33B-201ENST00000333371 SMG6Q86US8 1419 aaKnown RBP16.71■□□□□ 0.27
VPS33B-201ENST00000333371 NUDCQ9Y266 331 aa16.71■□□□□ 0.26
VPS33B-201ENST00000333371 ERICH6Q7L0X2 663 aa16.7■□□□□ 0.26
VPS33B-201ENST00000333371 TMC1Q8TDI8 760 aa16.7■□□□□ 0.26
VPS33B-201ENST00000333371 PNISRQ8TF01 805 aaKnown RBP16.7■□□□□ 0.26
VPS33B-201ENST00000333371 PLEKHH2Q8IVE3 1493 aa16.69■□□□□ 0.26
VPS33B-201ENST00000333371 RALGAPBQ86X10 1494 aa16.68■□□□□ 0.26
VPS33B-201ENST00000333371 SALL2Q9Y467 1007 aaPredicted RBP16.67■□□□□ 0.26
VPS33B-201ENST00000333371 KDM5DQ9BY66 1539 aa16.67■□□□□ 0.26
VPS33B-201ENST00000333371 UHRF1BP1Q6BDS2 1440 aa16.66■□□□□ 0.26
VPS33B-201ENST00000333371 EFCAB2Q5VUJ9 269 aa16.66■□□□□ 0.26
VPS33B-201ENST00000333371 MAST1Q9Y2H9 1570 aa16.65■□□□□ 0.26
VPS33B-201ENST00000333371 PLCH2O75038 1416 aa16.65■□□□□ 0.26
VPS33B-201ENST00000333371 BCL11AQ9H165 835 aa16.64■□□□□ 0.25
VPS33B-201ENST00000333371 RGL3Q3MIN7 710 aa16.64■□□□□ 0.25
VPS33B-201ENST00000333371 CCDC136Q96JN2 1154 aa16.64■□□□□ 0.25
VPS33B-201ENST00000333371 ARID4BQ4LE39 1312 aaPredicted RBP16.62■□□□□ 0.25
VPS33B-201ENST00000333371 ROCK2O75116 1388 aaKnown RBP16.61■□□□□ 0.25
VPS33B-201ENST00000333371 RNF123Q5XPI4 1314 aa16.61■□□□□ 0.25
VPS33B-201ENST00000333371 FAM135AQ9P2D6 1515 aa16.61■□□□□ 0.25
VPS33B-201ENST00000333371 NBPF1Q3BBV0 1214 aa16.6■□□□□ 0.25
VPS33B-201ENST00000333371 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.6■□□□□ 0.25
VPS33B-201ENST00000333371 PLXNC1O60486 1568 aa16.6■□□□□ 0.25
VPS33B-201ENST00000333371 ARHGEF12Q9NZN5 1544 aa16.6■□□□□ 0.25
VPS33B-201ENST00000333371 ABCC1P33527 1531 aa16.58■□□□□ 0.24
VPS33B-201ENST00000333371 MYBBP1AQ9BQG0 1328 aaKnown RBP16.58■□□□□ 0.24
VPS33B-201ENST00000333371 WDR7Q9Y4E6 1490 aa16.57■□□□□ 0.24
VPS33B-201ENST00000333371 PAK3O75914 559 aaPredicted RBP16.57■□□□□ 0.24
VPS33B-201ENST00000333371 E9PCH4 1651 aa16.57■□□□□ 0.24
VPS33B-201ENST00000333371 DUOX2Q9NRD8 1548 aa16.57■□□□□ 0.24
VPS33B-201ENST00000333371 UNC13BO14795 1591 aa16.57■□□□□ 0.24
VPS33B-201ENST00000333371 LRPPRCP42704 1394 aaKnown RBP16.56■□□□□ 0.24
VPS33B-201ENST00000333371 OSCARQ8IYS5 282 aa16.55■□□□□ 0.24
VPS33B-201ENST00000333371 BRD4O60885 1362 aaPredicted RBP16.54■□□□□ 0.24
VPS33B-201ENST00000333371 TRAPPC8Q9Y2L5 1435 aa16.54■□□□□ 0.24
VPS33B-201ENST00000333371 TRPM1Q7Z4N2 1603 aa16.53■□□□□ 0.24
VPS33B-201ENST00000333371 RALBP1Q15311 655 aa16.53■□□□□ 0.24
VPS33B-201ENST00000333371 CC2D1BQ5T0F9 858 aaKnown RBP16.53■□□□□ 0.24
VPS33B-201ENST00000333371 SPAG9O60271 1321 aaKnown RBP16.53■□□□□ 0.24
VPS33B-201ENST00000333371 CCDC144AA2RUR9 1427 aa16.53■□□□□ 0.24
VPS33B-201ENST00000333371 ERBINQ96RT1 1412 aa16.53■□□□□ 0.24
VPS33B-201ENST00000333371 ARAP3Q8WWN8 1544 aa16.53■□□□□ 0.24
VPS33B-201ENST00000333371 EXOC6Q8TAG9 804 aa16.52■□□□□ 0.24
VPS33B-201ENST00000333371 PRAG1Q86YV5 1406 aa16.52■□□□□ 0.24
VPS33B-201ENST00000333371 IQGAP3Q86VI3 1631 aa16.51■□□□□ 0.23
VPS33B-201ENST00000333371 CDCA7LQ96GN5 454 aa16.51■□□□□ 0.23
VPS33B-201ENST00000333371 PLA2R1Q13018 1463 aa16.51■□□□□ 0.23
VPS33B-201ENST00000333371 NOP58Q9Y2X3 529 aaKnown RBP16.5■□□□□ 0.23
VPS33B-201ENST00000333371 NBR1Q14596 966 aa16.5■□□□□ 0.23
VPS33B-201ENST00000333371 NPM1P06748 294 aaKnown RBP eCLIP16.49■□□□□ 0.23
VPS33B-201ENST00000333371 RRP1P56182 461 aaKnown RBP16.49■□□□□ 0.23
VPS33B-201ENST00000333371 AFAP1Q8N556 730 aa16.49■□□□□ 0.23
VPS33B-201ENST00000333371 DISP3Q9P2K9 1392 aa16.49■□□□□ 0.23
VPS33B-201ENST00000333371 FANCAO15360 1455 aa16.49■□□□□ 0.23
VPS33B-201ENST00000333371 MYT1LQ9UL68 1186 aa16.49■□□□□ 0.23
VPS33B-201ENST00000333371 PER1O15534 1290 aaPredicted RBP16.49■□□□□ 0.23
VPS33B-201ENST00000333371 ASXL2Q76L83 1435 aa16.48■□□□□ 0.23
VPS33B-201ENST00000333371 KTN1Q86UP2 1357 aaKnown RBP16.48■□□□□ 0.23
VPS33B-201ENST00000333371 A2MP01023 1474 aa16.48■□□□□ 0.23
VPS33B-201ENST00000333371 ABCA9Q8IUA7 1624 aa16.48■□□□□ 0.23
VPS33B-201ENST00000333371 NLRP13Q86W25 1043 aa16.48■□□□□ 0.23
VPS33B-201ENST00000333371 RCAN3Q9UKA8 241 aa16.48■□□□□ 0.23
VPS33B-201ENST00000333371 PARD3Q8TEW0 1356 aa16.48■□□□□ 0.23
VPS33B-201ENST00000333371 RTEL1-TNFRSF6BF6WH68 1400 aa16.46■□□□□ 0.23
VPS33B-201ENST00000333371 ZFYVE16Q7Z3T8 1539 aa16.46■□□□□ 0.22
VPS33B-201ENST00000333371 MAGI2Q86UL8 1455 aa16.45■□□□□ 0.22
VPS33B-201ENST00000333371 PLIN1O60240 522 aa16.45■□□□□ 0.22
VPS33B-201ENST00000333371 TESK2Q96S53 571 aa16.45■□□□□ 0.22
VPS33B-201ENST00000333371 PANK3Q9H999 370 aa16.45■□□□□ 0.22
VPS33B-201ENST00000333371 ADGRL1O94910 1474 aa16.44■□□□□ 0.22
VPS33B-201ENST00000333371 SKAP1Q86WV1 359 aa16.43■□□□□ 0.22
VPS33B-201ENST00000333371 COL17A1Q9UMD9 1497 aaPredicted RBP16.42■□□□□ 0.22
VPS33B-201ENST00000333371 NPM2Q86SE8 214 aaKnown RBP16.42■□□□□ 0.22
VPS33B-201ENST00000333371 SCAPERQ9BY12 1400 aa16.42■□□□□ 0.22
VPS33B-201ENST00000333371 ATP7AQ04656 1500 aa16.42■□□□□ 0.22
VPS33B-201ENST00000333371 ANP32AP39687 249 aaKnown RBP16.42■□□□□ 0.22
VPS33B-201ENST00000333371 IPO9Q96P70 1041 aaKnown RBP16.4■□□□□ 0.22
VPS33B-201ENST00000333371 GPRASP1Q5JY77 1395 aa16.4■□□□□ 0.22
VPS33B-201ENST00000333371 DEKP35659 375 aaKnown RBP16.4■□□□□ 0.22
VPS33B-201ENST00000333371 PRDM15P57071 1507 aaPredicted RBP16.4■□□□□ 0.22
VPS33B-201ENST00000333371 INO80Q9ULG1 1556 aaPredicted RBP16.39■□□□□ 0.21
VPS33B-201ENST00000333371 ATP10AO60312 1499 aa16.37■□□□□ 0.21
VPS33B-201ENST00000333371 KANK1Q14678 1352 aa16.37■□□□□ 0.21
VPS33B-201ENST00000333371 KIF3BO15066 747 aa16.36■□□□□ 0.21
VPS33B-201ENST00000333371 TMF1P82094 1093 aa16.35■□□□□ 0.21
VPS33B-201ENST00000333371 ZBTB47Q9UFB7 747 aaPredicted RBP16.35■□□□□ 0.21
VPS33B-201ENST00000333371 DEPDC5O75140 1603 aa16.35■□□□□ 0.21
VPS33B-201ENST00000333371 PDE3BQ13370 1112 aa16.34■□□□□ 0.21
VPS33B-201ENST00000333371 CRBNQ96SW2 442 aa16.34■□□□□ 0.21
VPS33B-201ENST00000333371 ADAMTS8Q9UP79 889 aa16.34■□□□□ 0.21
VPS33B-201ENST00000333371 C20orf194Q5TEA3 1177 aa16.33■□□□□ 0.21
VPS33B-201ENST00000333371 CD109Q6YHK3 1445 aa16.33■□□□□ 0.2
VPS33B-201ENST00000333371 EIF2AK4Q9P2K8 1649 aaKnown RBP16.33■□□□□ 0.2
VPS33B-201ENST00000333371 PDE4AP27815 886 aa16.32■□□□□ 0.2
VPS33B-201ENST00000333371 BLMP54132 1417 aaPredicted RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms