RNA–Protein interactions for RNA: ENST00000330295.9

CTHRC1-201, Transcript of collagen triple helix repeat containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTHRC1, Length 1,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-201ENST00000330295 TNRQ92752 1358 aa24.8■■□□□ 1.56
CTHRC1-201ENST00000330295 DEPDC5O75140 1603 aa24.79■■□□□ 1.56
CTHRC1-201ENST00000330295 INO80Q9ULG1 1556 aaPredicted RBP24.79■■□□□ 1.56
CTHRC1-201ENST00000330295 ZNF777Q9ULD5 760 aaPredicted RBP24.77■■□□□ 1.56
CTHRC1-201ENST00000330295 IQGAP1P46940 1657 aa24.76■■□□□ 1.55
CTHRC1-201ENST00000330295 THEMISQ8N1K5 641 aaPredicted RBP24.75■■□□□ 1.55
CTHRC1-201ENST00000330295 ARHGAP35Q9NRY4 1499 aa24.75■■□□□ 1.55
CTHRC1-201ENST00000330295 HNRNPMP52272 730 aaKnown RBP eCLIP24.74■■□□□ 1.55
CTHRC1-201ENST00000330295 FBXO31Q5XUX0 539 aaPredicted RBP24.74■■□□□ 1.55
CTHRC1-201ENST00000330295 ADGBQ8N7X0 1667 aa24.71■■□□□ 1.55
CTHRC1-201ENST00000330295 UGGT1Q9NYU2 1555 aa24.7■■□□□ 1.54
CTHRC1-201ENST00000330295 PZPP20742 1482 aa24.7■■□□□ 1.54
CTHRC1-201ENST00000330295 FAM135AQ9P2D6 1515 aa24.69■■□□□ 1.54
CTHRC1-201ENST00000330295 FOXD1Q16676 465 aa24.68■■□□□ 1.54
CTHRC1-201ENST00000330295 NLRP1Q9C000 1473 aa24.67■■□□□ 1.54
CTHRC1-201ENST00000330295 KIAA1107Q9UPP5 1409 aa24.67■■□□□ 1.54
CTHRC1-201ENST00000330295 CCDC18Q5T9S5 1454 aa24.64■■□□□ 1.54
CTHRC1-201ENST00000330295 GPATCH8Q9UKJ3 1502 aaKnown RBP24.64■■□□□ 1.53
CTHRC1-201ENST00000330295 PLEKHH2Q8IVE3 1493 aa24.64■■□□□ 1.53
CTHRC1-201ENST00000330295 FAM135BQ49AJ0 1406 aa24.63■■□□□ 1.53
CTHRC1-201ENST00000330295 MIA2Q96PC5 1412 aa24.63■■□□□ 1.53
CTHRC1-201ENST00000330295 UPF1Q92900 1129 aaKnown RBP eCLIP24.62■■□□□ 1.53
CTHRC1-201ENST00000330295 KDM5DQ9BY66 1539 aa24.61■■□□□ 1.53
CTHRC1-201ENST00000330295 XIRP1Q702N8 1843 aaKnown RBP24.6■■□□□ 1.53
CTHRC1-201ENST00000330295 ZC3H13Q5T200 1668 aaKnown RBP24.59■■□□□ 1.53
CTHRC1-201ENST00000330295 UBTFP17480 764 aaKnown RBP24.56■■□□□ 1.52
CTHRC1-201ENST00000330295 DHX29Q7Z478 1369 aaKnown RBP24.54■■□□□ 1.52
CTHRC1-201ENST00000330295 CFDP1Q9UEE9 299 aaPredicted RBP24.54■■□□□ 1.52
CTHRC1-201ENST00000330295 CASKIN1Q8WXD9 1431 aa24.53■■□□□ 1.52
CTHRC1-201ENST00000330295 WASHC2CQ9Y4E1 1318 aa24.52■■□□□ 1.52
CTHRC1-201ENST00000330295 ROBO1Q9Y6N7 1651 aa24.51■■□□□ 1.51
CTHRC1-201ENST00000330295 KIF3BO15066 747 aa24.51■■□□□ 1.51
CTHRC1-201ENST00000330295 EHMT2Q96KQ7 1210 aa24.49■■□□□ 1.51
CTHRC1-201ENST00000330295 RTEL1-TNFRSF6BF6WH68 1400 aa24.49■■□□□ 1.51
CTHRC1-201ENST00000330295 SCAF11Q99590 1463 aaKnown RBP24.45■■□□□ 1.51
CTHRC1-201ENST00000330295 SRCAPQ6ZRS2 3230 aa24.44■■□□□ 1.5
CTHRC1-201ENST00000330295 CCNB3Q8WWL7 1395 aa24.43■■□□□ 1.5
CTHRC1-201ENST00000330295 TRIM52Q96A61 297 aa24.43■■□□□ 1.5
CTHRC1-201ENST00000330295 MBD5Q9P267 1494 aa24.43■■□□□ 1.5
CTHRC1-201ENST00000330295 JCADQ9P266 1359 aa24.41■■□□□ 1.5
CTHRC1-201ENST00000330295 TMEM94Q12767 1356 aa24.4■■□□□ 1.5
CTHRC1-201ENST00000330295 LRRC9Q6ZRR7 1453 aa24.39■■□□□ 1.5
CTHRC1-201ENST00000330295 UBR1Q8IWV7 1749 aa24.39■■□□□ 1.5
CTHRC1-201ENST00000330295 ZNF644Q9H582 1327 aaPredicted RBP24.38■■□□□ 1.49
CTHRC1-201ENST00000330295 PHLPP1O60346 1717 aa24.38■■□□□ 1.49
CTHRC1-201ENST00000330295 LTKP29376 864 aa24.37■■□□□ 1.49
CTHRC1-201ENST00000330295 ZNF772Q68DY9 489 aaPredicted RBP24.37■■□□□ 1.49
CTHRC1-201ENST00000330295 FYCO1Q9BQS8 1478 aa24.37■■□□□ 1.49
CTHRC1-201ENST00000330295 ERVK-7P63135 1459 aa24.35■■□□□ 1.49
CTHRC1-201ENST00000330295 MAP3K1Q13233 1512 aa24.35■■□□□ 1.49
CTHRC1-201ENST00000330295 ARHGAP23Q9P227 1491 aa24.34■■□□□ 1.49
CTHRC1-201ENST00000330295 TXNDC2Q86VQ3 553 aa24.34■■□□□ 1.49
CTHRC1-201ENST00000330295 NCOA2Q15596 1464 aa24.33■■□□□ 1.49
CTHRC1-201ENST00000330295 SLIT1O75093 1534 aa24.33■■□□□ 1.49
CTHRC1-201ENST00000330295 LRP6O75581 1613 aa24.32■■□□□ 1.48
CTHRC1-201ENST00000330295 ABCC3O15438 1527 aa24.3■■□□□ 1.48
CTHRC1-201ENST00000330295 MEX3CQ5U5Q3 659 aaKnown RBP24.29■■□□□ 1.48
CTHRC1-201ENST00000330295 CDK12Q9NYV4 1490 aaPredicted RBP24.28■■□□□ 1.48
CTHRC1-201ENST00000330295 RXRBP28702 533 aa24.28■■□□□ 1.48
CTHRC1-201ENST00000330295 EID1Q9Y6B2 187 aa24.27■■□□□ 1.48
CTHRC1-201ENST00000330295 TIAM1Q13009 1591 aa24.27■■□□□ 1.48
CTHRC1-201ENST00000330295 SPATA31A6Q5VVP1 1343 aa24.27■■□□□ 1.48
CTHRC1-201ENST00000330295 COL16A1Q07092 1604 aaPredicted RBP24.27■■□□□ 1.48
CTHRC1-201ENST00000330295 PROSER2Q86WR7 435 aaPredicted RBP24.26■■□□□ 1.47
CTHRC1-201ENST00000330295 CCDC141Q6ZP82 1450 aa24.26■■□□□ 1.47
CTHRC1-201ENST00000330295 KCNA6P17658 529 aa24.25■■□□□ 1.47
CTHRC1-201ENST00000330295 RBM33Q96EV2 1170 aaKnown RBP24.25■■□□□ 1.47
CTHRC1-201ENST00000330295 SLAIN2Q9P270 581 aa24.24■■□□□ 1.47
CTHRC1-201ENST00000330295 FGD6Q6ZV73 1430 aa24.23■■□□□ 1.47
CTHRC1-201ENST00000330295 PRDM15P57071 1507 aaPredicted RBP24.23■■□□□ 1.47
CTHRC1-201ENST00000330295 CFAP65Q6ZU64 1925 aaKnown RBP24.23■■□□□ 1.47
CTHRC1-201ENST00000330295 MTUS2Q5JR59 1369 aa24.22■■□□□ 1.47
CTHRC1-201ENST00000330295 MSH6P52701 1360 aa24.21■■□□□ 1.47
CTHRC1-201ENST00000330295 NKTRP30414 1462 aaKnown RBP24.19■■□□□ 1.46
CTHRC1-201ENST00000330295 TMEM2Q9UHN6 1383 aa24.16■■□□□ 1.46
CTHRC1-201ENST00000330295 RSPH4AQ5TD94 716 aa24.16■■□□□ 1.46
CTHRC1-201ENST00000330295 SHPRHQ149N8 1683 aa24.15■■□□□ 1.46
CTHRC1-201ENST00000330295 NWD1Q149M9 1564 aa24.15■■□□□ 1.46
CTHRC1-201ENST00000330295 CEP152O94986 1710 aa24.15■■□□□ 1.46
CTHRC1-201ENST00000330295 CAMSAP2Q08AD1 1489 aa24.14■■□□□ 1.46
CTHRC1-201ENST00000330295 MROH1Q8NDA8 1641 aa24.13■■□□□ 1.45
CTHRC1-201ENST00000330295 SLC26A8Q96RN1 970 aa24.12■■□□□ 1.45
CTHRC1-201ENST00000330295 TET3O43151 1660 aa24.11■■□□□ 1.45
CTHRC1-201ENST00000330295 PIK3C2BO00750 1634 aa24.11■■□□□ 1.45
CTHRC1-201ENST00000330295 EIF2AK4Q9P2K8 1649 aaKnown RBP24.1■■□□□ 1.45
CTHRC1-201ENST00000330295 RGS12O14924 1447 aa24.1■■□□□ 1.45
CTHRC1-201ENST00000330295 KDM5AP29375 1690 aaKnown RBP24.08■■□□□ 1.45
CTHRC1-201ENST00000330295 AHDC1Q5TGY3 1603 aaPredicted RBP24.08■■□□□ 1.45
CTHRC1-201ENST00000330295 EHBP1L1Q8N3D4 1523 aa24.08■■□□□ 1.45
CTHRC1-201ENST00000330295 CEP162Q5TB80 1403 aa24.07■■□□□ 1.44
CTHRC1-201ENST00000330295 ARHGEF5Q12774 1597 aa24.07■■□□□ 1.44
CTHRC1-201ENST00000330295 AFF2P51816 1311 aa24.07■■□□□ 1.44
CTHRC1-201ENST00000330295 TSPY4P0CV99 314 aa24.06■■□□□ 1.44
CTHRC1-201ENST00000330295 TSPY10P0CW01 314 aa24.06■■□□□ 1.44
CTHRC1-201ENST00000330295 ZRANB1Q9UGI0 708 aa24.06■■□□□ 1.44
CTHRC1-201ENST00000330295 STAG3Q9UJ98 1225 aa24.05■■□□□ 1.44
CTHRC1-201ENST00000330295 EFCAB6Q5THR3 1501 aa24.05■■□□□ 1.44
CTHRC1-201ENST00000330295 ARHGAP31Q2M1Z3 1444 aa24.04■■□□□ 1.44
CTHRC1-201ENST00000330295 SETBP1Q9Y6X0 1596 aa24.03■■□□□ 1.44
CTHRC1-201ENST00000330295 NUTM2BA6NNL0 878 aaPredicted RBP24.03■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms