RNA–Protein interactions for RNA: ENST00000330295.9

CTHRC1-201, Transcript of collagen triple helix repeat containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTHRC1, Length 1,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1-201ENST00000330295 NISCHQ9Y2I1 1504 aa38.6■■■■□ 3.77
CTHRC1-201ENST00000330295 ABCC9O60706 1549 aa36.32■■■■□ 3.4
CTHRC1-201ENST00000330295 CCDC180Q9P1Z9 1646 aa35.17■■■■□ 3.22
CTHRC1-201ENST00000330295 DNAJC5BQ9UF47 199 aa35.13■■■■□ 3.21
CTHRC1-201ENST00000330295 RB1CC1Q8TDY2 1594 aa34.05■■■■□ 3.04
CTHRC1-201ENST00000330295 PABPN1Q86U42 306 aaKnown RBP eCLIP33.61■■■□□ 2.97
CTHRC1-201ENST00000330295 NACADO15069 1562 aa33.53■■■□□ 2.96
CTHRC1-201ENST00000330295 UNC13AQ9UPW8 1703 aa33.29■■■□□ 2.92
CTHRC1-201ENST00000330295 DNAJC5Q9H3Z4 198 aa33.14■■■□□ 2.9
CTHRC1-201ENST00000330295 BICRAQ9NZM4 1560 aa33.12■■■□□ 2.89
CTHRC1-201ENST00000330295 DCAF8L2P0C7V8 631 aa33.06■■■□□ 2.88
CTHRC1-201ENST00000330295 CECR2Q9BXF3 1484 aa32.86■■■□□ 2.85
CTHRC1-201ENST00000330295 CC2D2AQ9P2K1 1620 aa32.76■■■□□ 2.83
CTHRC1-201ENST00000330295 MYO15BQ96JP2 1530 aa32.68■■■□□ 2.82
CTHRC1-201ENST00000330295 SHROOM4Q9ULL8 1493 aa32.55■■■□□ 2.8
CTHRC1-201ENST00000330295 EIF4G1Q04637 1599 aaKnown RBP32.4■■■□□ 2.78
CTHRC1-201ENST00000330295 SCRIBQ14160 1630 aa31.97■■■□□ 2.71
CTHRC1-201ENST00000330295 DCAF1Q9Y4B6 1507 aa31.82■■■□□ 2.68
CTHRC1-201ENST00000330295 CUX2O14529 1486 aa31.81■■■□□ 2.68
CTHRC1-201ENST00000330295 ZCCHC6Q5VYS8 1495 aaKnown RBP31.75■■■□□ 2.67
CTHRC1-201ENST00000330295 ERCC6Q03468 1493 aa31.45■■■□□ 2.62
CTHRC1-201ENST00000330295 TRIM41Q8WV44 630 aa31.18■■■□□ 2.58
CTHRC1-201ENST00000330295 AEBP2Q6ZN18 517 aaPredicted RBP31.09■■■□□ 2.57
CTHRC1-201ENST00000330295 NCAPD3P42695 1498 aa30.97■■■□□ 2.55
CTHRC1-201ENST00000330295 NESP48681 1621 aa30.87■■■□□ 2.53
CTHRC1-201ENST00000330295 THOC2Q8NI27 1593 aaKnown RBP30.81■■■□□ 2.52
CTHRC1-201ENST00000330295 ATAD2BQ9ULI0 1458 aa30.7■■■□□ 2.51
CTHRC1-201ENST00000330295 HMGXB3Q12766 1538 aa30.64■■■□□ 2.5
CTHRC1-201ENST00000330295 SMARCA2P51531 1590 aa30.56■■■□□ 2.48
CTHRC1-201ENST00000330295 LAMC3Q9Y6N6 1575 aa30.46■■■□□ 2.47
CTHRC1-201ENST00000330295 KIF21AQ7Z4S6 1674 aa30.43■■■□□ 2.46
CTHRC1-201ENST00000330295 SMARCA4P51532 1647 aa30.38■■■□□ 2.45
CTHRC1-201ENST00000330295 BAZ1BQ9UIG0 1483 aaKnown RBP30.34■■■□□ 2.45
CTHRC1-201ENST00000330295 PDS5BQ9NTI5 1447 aa30.32■■■□□ 2.44
CTHRC1-201ENST00000330295 BAZ1AQ9NRL2 1556 aaPredicted RBP30.24■■■□□ 2.43
CTHRC1-201ENST00000330295 MRC2Q9UBG0 1479 aa30.14■■■□□ 2.42
CTHRC1-201ENST00000330295 OSCARQ8IYS5 282 aa30.14■■■□□ 2.42
CTHRC1-201ENST00000330295 WDR62O43379 1518 aa30.12■■■□□ 2.41
CTHRC1-201ENST00000330295 PEG3Q9GZU2 1588 aa30.1■■■□□ 2.41
CTHRC1-201ENST00000330295 CADPSQ9ULU8 1353 aa29.96■■■□□ 2.39
CTHRC1-201ENST00000330295 RIMBP3CA6NJZ7 1639 aa29.89■■■□□ 2.38
CTHRC1-201ENST00000330295 RIMBP3BA6NNM3 1639 aa29.89■■■□□ 2.38
CTHRC1-201ENST00000330295 RIMBP3Q9UFD9 1639 aa29.89■■■□□ 2.38
CTHRC1-201ENST00000330295 CEP164Q9UPV0 1460 aa29.78■■■□□ 2.36
CTHRC1-201ENST00000330295 MROH2BQ7Z745 1585 aa29.73■■■□□ 2.35
CTHRC1-201ENST00000330295 ARHGEF11O15085 1522 aa29.68■■■□□ 2.34
CTHRC1-201ENST00000330295 FANCD2Q9BXW9 1451 aa29.63■■■□□ 2.33
CTHRC1-201ENST00000330295 TRHP20396 242 aaPredicted RBP29.57■■■□□ 2.32
CTHRC1-201ENST00000330295 CYB5RLQ6IPT4 315 aa29.51■■■□□ 2.31
CTHRC1-201ENST00000330295 URB2Q14146 1524 aaKnown RBP29.47■■■□□ 2.31
CTHRC1-201ENST00000330295 CHIC1Q5VXU3 224 aa29.43■■■□□ 2.3
CTHRC1-201ENST00000330295 CFTRP13569 1480 aa29.38■■■□□ 2.29
CTHRC1-201ENST00000330295 WIZO95785 1651 aa29.32■■■□□ 2.28
CTHRC1-201ENST00000330295 ARAP1Q96P48 1450 aa29.31■■■□□ 2.28
CTHRC1-201ENST00000330295 ZNF608Q9ULD9 1512 aaPredicted RBP29.3■■■□□ 2.28
CTHRC1-201ENST00000330295 IFT140Q96RY7 1462 aa29.23■■■□□ 2.27
CTHRC1-201ENST00000330295 RSF1Q96T23 1441 aaPredicted RBP29.11■■■□□ 2.25
CTHRC1-201ENST00000330295 CHD1O14646 1710 aa29.09■■■□□ 2.25
CTHRC1-201ENST00000330295 EIF4G3O43432 1585 aaKnown RBP29.09■■■□□ 2.25
CTHRC1-201ENST00000330295 PRDM2Q13029 1718 aa29■■■□□ 2.23
CTHRC1-201ENST00000330295 TOPBP1Q92547 1522 aa28.94■■■□□ 2.22
CTHRC1-201ENST00000330295 FBLN2P98095 1184 aa28.91■■■□□ 2.22
CTHRC1-201ENST00000330295 AQRO60306 1485 aaKnown RBP eCLIP28.88■■■□□ 2.21
CTHRC1-201ENST00000330295 TOP2AP11388 1531 aaKnown RBP28.87■■■□□ 2.21
CTHRC1-201ENST00000330295 ABCC8Q09428 1581 aa28.79■■■□□ 2.2
CTHRC1-201ENST00000330295 TARBP1Q13395 1621 aaKnown RBP28.78■■■□□ 2.2
CTHRC1-201ENST00000330295 CLASP1Q7Z460 1538 aa28.74■■■□□ 2.19
CTHRC1-201ENST00000330295 DNMBPQ6XZF7 1577 aa28.73■■■□□ 2.19
CTHRC1-201ENST00000330295 SYNJ1O43426 1573 aa28.61■■■□□ 2.17
CTHRC1-201ENST00000330295 POLA1P09884 1462 aaPredicted RBP28.58■■■□□ 2.17
CTHRC1-201ENST00000330295 SNAPC4Q5SXM2 1469 aa28.55■■■□□ 2.16
CTHRC1-201ENST00000330295 CCDC88BA6NC98 1476 aa28.54■■■□□ 2.16
CTHRC1-201ENST00000330295 GAPVD1Q14C86 1478 aa28.52■■■□□ 2.16
CTHRC1-201ENST00000330295 CHMP7Q8WUX9 453 aaPredicted RBP28.51■■■□□ 2.15
CTHRC1-201ENST00000330295 TDRD9Q8NDG6 1382 aaKnown RBP28.5■■■□□ 2.15
CTHRC1-201ENST00000330295 ILDR1Q86SU0 546 aaPredicted RBP28.5■■■□□ 2.15
CTHRC1-201ENST00000330295 RAD54L2Q9Y4B4 1467 aa28.48■■■□□ 2.15
CTHRC1-201ENST00000330295 MAGI1Q96QZ7 1491 aaPredicted RBP28.43■■■□□ 2.14
CTHRC1-201ENST00000330295 SOGA1O94964 1423 aa28.41■■■□□ 2.14
CTHRC1-201ENST00000330295 WDR97A6NE52 1622 aa28.4■■■□□ 2.14
CTHRC1-201ENST00000330295 SYNJ2O15056 1496 aa28.36■■■□□ 2.13
CTHRC1-201ENST00000330295 GRIN2BQ13224 1484 aa28.31■■■□□ 2.12
CTHRC1-201ENST00000330295 KIF13AQ9H1H9 1805 aa28.22■■■□□ 2.11
CTHRC1-201ENST00000330295 FGD5Q6ZNL6 1462 aa28.22■■■□□ 2.11
CTHRC1-201ENST00000330295 ERCC6L2Q5T890 1561 aa28.2■■■□□ 2.1
CTHRC1-201ENST00000330295 KDM4FA0A1W2PPD8 638 aa28.13■■■□□ 2.09
CTHRC1-201ENST00000330295 PBRM1Q86U86 1689 aa28.12■■■□□ 2.09
CTHRC1-201ENST00000330295 CEP170Q5SW79 1584 aa28.03■■■□□ 2.08
CTHRC1-201ENST00000330295 CUX1P39880 1505 aa28■■■□□ 2.07
CTHRC1-201ENST00000330295 GRIN2AQ12879 1464 aa27.95■■■□□ 2.06
CTHRC1-201ENST00000330295 SHROOM2Q13796 1616 aa27.92■■■□□ 2.06
CTHRC1-201ENST00000330295 FAM69CQ0P6D2 419 aa27.92■■■□□ 2.06
CTHRC1-201ENST00000330295 ABCC10Q5T3U5 1492 aa27.91■■■□□ 2.06
CTHRC1-201ENST00000330295 ABCA5Q8WWZ7 1642 aa27.91■■■□□ 2.06
CTHRC1-201ENST00000330295 NUP160Q12769 1436 aa27.91■■■□□ 2.06
CTHRC1-201ENST00000330295 KDM6BO15054 1643 aa27.88■■■□□ 2.05
CTHRC1-201ENST00000330295 ABCA10Q8WWZ4 1543 aa27.83■■■□□ 2.05
CTHRC1-201ENST00000330295 DIP2BQ9P265 1576 aa27.81■■■□□ 2.04
CTHRC1-201ENST00000330295 ADAMTS12P58397 1594 aa27.78■■■□□ 2.04
CTHRC1-201ENST00000330295 MAPKBP1O60336 1514 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms