RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 ADGRL2O95490 1459 aa17.96■□□□□ 0.47
CTDP1-202ENST00000299543 MYBBP1AQ9BQG0 1328 aaKnown RBP17.95■□□□□ 0.46
CTDP1-202ENST00000299543 SMG6Q86US8 1419 aaKnown RBP17.94■□□□□ 0.46
CTDP1-202ENST00000299543 ARID4BQ4LE39 1312 aaPredicted RBP17.94■□□□□ 0.46
CTDP1-202ENST00000299543 CCDC144AA2RUR9 1427 aa17.94■□□□□ 0.46
CTDP1-202ENST00000299543 NUP160Q12769 1436 aa17.93■□□□□ 0.46
CTDP1-202ENST00000299543 MBD5Q9P267 1494 aa17.93■□□□□ 0.46
CTDP1-202ENST00000299543 NPM2Q86SE8 214 aaKnown RBP17.93■□□□□ 0.46
CTDP1-202ENST00000299543 RALBP1Q15311 655 aa17.93■□□□□ 0.46
CTDP1-202ENST00000299543 LAS1LQ9Y4W2 734 aaKnown RBP17.91■□□□□ 0.46
CTDP1-202ENST00000299543 ADGBQ8N7X0 1667 aa17.9■□□□□ 0.46
CTDP1-202ENST00000299543 PANK3Q9H999 370 aa17.9■□□□□ 0.46
CTDP1-202ENST00000299543 ABCC10Q5T3U5 1492 aa17.9■□□□□ 0.46
CTDP1-202ENST00000299543 CDCA7LQ96GN5 454 aa17.9■□□□□ 0.46
CTDP1-202ENST00000299543 RALGAPBQ86X10 1494 aa17.89■□□□□ 0.45
CTDP1-202ENST00000299543 KTN1Q86UP2 1357 aaKnown RBP17.89■□□□□ 0.45
CTDP1-202ENST00000299543 NLRP13Q86W25 1043 aa17.89■□□□□ 0.45
CTDP1-202ENST00000299543 EXOC6Q8TAG9 804 aa17.89■□□□□ 0.45
CTDP1-202ENST00000299543 BRPF3Q9ULD4 1205 aa17.89■□□□□ 0.45
CTDP1-202ENST00000299543 KDM5CP41229 1560 aa17.88■□□□□ 0.45
CTDP1-202ENST00000299543 RCAN3Q9UKA8 241 aa17.88■□□□□ 0.45
CTDP1-202ENST00000299543 RSPH4AQ5TD94 716 aa17.87■□□□□ 0.45
CTDP1-202ENST00000299543 UHRF1BP1Q6BDS2 1440 aa17.87■□□□□ 0.45
CTDP1-202ENST00000299543 PLIN1O60240 522 aa17.87■□□□□ 0.45
CTDP1-202ENST00000299543 CDC42BPAQ5VT25 1732 aa17.86■□□□□ 0.45
CTDP1-202ENST00000299543 BRD4O60885 1362 aaPredicted RBP17.85■□□□□ 0.45
CTDP1-202ENST00000299543 CCDC141Q6ZP82 1450 aa17.85■□□□□ 0.45
CTDP1-202ENST00000299543 ZBTB47Q9UFB7 747 aaPredicted RBP17.84■□□□□ 0.45
CTDP1-202ENST00000299543 ABCA8O94911 1581 aa17.84■□□□□ 0.45
CTDP1-202ENST00000299543 ARHGAP5Q13017 1502 aa17.84■□□□□ 0.45
CTDP1-202ENST00000299543 ANP32AP39687 249 aaKnown RBP17.83■□□□□ 0.45
CTDP1-202ENST00000299543 RRP1P56182 461 aaKnown RBP17.83■□□□□ 0.45
CTDP1-202ENST00000299543 TMF1P82094 1093 aa17.83■□□□□ 0.45
CTDP1-202ENST00000299543 PLEKHH2Q8IVE3 1493 aa17.82■□□□□ 0.44
CTDP1-202ENST00000299543 FAM135AQ9P2D6 1515 aa17.81■□□□□ 0.44
CTDP1-202ENST00000299543 SHANK2Q9UPX8 1470 aa17.81■□□□□ 0.44
CTDP1-202ENST00000299543 CROCC2H7BZ55 1655 aa17.81■□□□□ 0.44
CTDP1-202ENST00000299543 ADCY10Q96PN6 1610 aa17.81■□□□□ 0.44
CTDP1-202ENST00000299543 DISP3Q9P2K9 1392 aa17.8■□□□□ 0.44
CTDP1-202ENST00000299543 AFAP1Q8N556 730 aa17.79■□□□□ 0.44
CTDP1-202ENST00000299543 PER1O15534 1290 aaPredicted RBP17.79■□□□□ 0.44
CTDP1-202ENST00000299543 SYCP2Q9BX26 1530 aa17.79■□□□□ 0.44
CTDP1-202ENST00000299543 PRAG1Q86YV5 1406 aa17.79■□□□□ 0.44
CTDP1-202ENST00000299543 EFCAB2Q5VUJ9 269 aa17.78■□□□□ 0.44
CTDP1-202ENST00000299543 RNF123Q5XPI4 1314 aa17.78■□□□□ 0.44
CTDP1-202ENST00000299543 IPO9Q96P70 1041 aaKnown RBP17.77■□□□□ 0.44
CTDP1-202ENST00000299543 TESK2Q96S53 571 aa17.77■□□□□ 0.44
CTDP1-202ENST00000299543 KNSTRNQ9Y448 316 aa17.77■□□□□ 0.44
CTDP1-202ENST00000299543 POLR1AO95602 1720 aaPredicted RBP17.77■□□□□ 0.44
CTDP1-202ENST00000299543 ARHGEF12Q9NZN5 1544 aa17.77■□□□□ 0.44
CTDP1-202ENST00000299543 NEFMP07197 916 aa17.77■□□□□ 0.43
CTDP1-202ENST00000299543 SKAP1Q86WV1 359 aa17.77■□□□□ 0.43
CTDP1-202ENST00000299543 LRPPRCP42704 1394 aaKnown RBP17.76■□□□□ 0.43
CTDP1-202ENST00000299543 PKNOX2Q96KN3 472 aa17.76■□□□□ 0.43
CTDP1-202ENST00000299543 SAMD9LQ8IVG5 1584 aa17.75■□□□□ 0.43
CTDP1-202ENST00000299543 WDR43Q15061 677 aaKnown RBP eCLIP17.74■□□□□ 0.43
CTDP1-202ENST00000299543 ADAMTS8Q9UP79 889 aa17.74■□□□□ 0.43
CTDP1-202ENST00000299543 PLA2R1Q13018 1463 aa17.74■□□□□ 0.43
CTDP1-202ENST00000299543 A2MP01023 1474 aa17.73■□□□□ 0.43
CTDP1-202ENST00000299543 SPAG9O60271 1321 aaKnown RBP17.72■□□□□ 0.43
CTDP1-202ENST00000299543 PARD3Q8TEW0 1356 aa17.71■□□□□ 0.43
CTDP1-202ENST00000299543 CHGAP10645 457 aaKnown RBP17.71■□□□□ 0.43
CTDP1-202ENST00000299543 ERBINQ96RT1 1412 aa17.71■□□□□ 0.43
CTDP1-202ENST00000299543 PDE3BQ13370 1112 aa17.7■□□□□ 0.42
CTDP1-202ENST00000299543 CRBNQ96SW2 442 aa17.7■□□□□ 0.42
CTDP1-202ENST00000299543 CCDC146Q8IYE0 955 aa17.69■□□□□ 0.42
CTDP1-202ENST00000299543 KIF3BO15066 747 aa17.68■□□□□ 0.42
CTDP1-202ENST00000299543 SENP3Q9H4L4 574 aaPredicted RBP17.68■□□□□ 0.42
CTDP1-202ENST00000299543 ARHGEF5Q12774 1597 aa17.68■□□□□ 0.42
CTDP1-202ENST00000299543 KDM5DQ9BY66 1539 aa17.68■□□□□ 0.42
CTDP1-202ENST00000299543 CDC42BPBQ9Y5S2 1711 aa17.68■□□□□ 0.42
CTDP1-202ENST00000299543 TTC37Q6PGP7 1564 aa17.66■□□□□ 0.42
CTDP1-202ENST00000299543 C20orf194Q5TEA3 1177 aa17.66■□□□□ 0.42
CTDP1-202ENST00000299543 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.65■□□□□ 0.42
CTDP1-202ENST00000299543 PDE4AP27815 886 aa17.65■□□□□ 0.42
CTDP1-202ENST00000299543 ERCC6L2Q5T890 1561 aa17.65■□□□□ 0.42
CTDP1-202ENST00000299543 PPP2R1AP30153 589 aa17.65■□□□□ 0.42
CTDP1-202ENST00000299543 TRAPPC8Q9Y2L5 1435 aa17.64■□□□□ 0.41
CTDP1-202ENST00000299543 TNNT2P45379 298 aaPredicted RBP17.63■□□□□ 0.41
CTDP1-202ENST00000299543 TCERG1O14776 1098 aaKnown RBP17.62■□□□□ 0.41
CTDP1-202ENST00000299543 PLEKHG5O94827 1062 aa17.62■□□□□ 0.41
CTDP1-202ENST00000299543 PREX2Q70Z35 1606 aa17.62■□□□□ 0.41
CTDP1-202ENST00000299543 CFAP70Q5T0N1 1121 aa17.62■□□□□ 0.41
CTDP1-202ENST00000299543 COL17A1Q9UMD9 1497 aaPredicted RBP17.61■□□□□ 0.41
CTDP1-202ENST00000299543 GPRASP1Q5JY77 1395 aa17.61■□□□□ 0.41
CTDP1-202ENST00000299543 WASHC2CQ9Y4E1 1318 aa17.61■□□□□ 0.41
CTDP1-202ENST00000299543 CDCA8Q53HL2 280 aa17.6■□□□□ 0.41
CTDP1-202ENST00000299543 TRPM1Q7Z4N2 1603 aa17.59■□□□□ 0.41
CTDP1-202ENST00000299543 NEUROD2Q15784 382 aa17.59■□□□□ 0.41
CTDP1-202ENST00000299543 APAF1O14727 1248 aa17.57■□□□□ 0.4
CTDP1-202ENST00000299543 PLCH2O75038 1416 aa17.57■□□□□ 0.4
CTDP1-202ENST00000299543 GOLGA2Q08379 1002 aa17.57■□□□□ 0.4
CTDP1-202ENST00000299543 AMER1Q5JTC6 1135 aaPredicted RBP17.57■□□□□ 0.4
CTDP1-202ENST00000299543 SLC4A3P48751 1232 aa17.56■□□□□ 0.4
CTDP1-202ENST00000299543 DUOX2Q9NRD8 1548 aa17.55■□□□□ 0.4
CTDP1-202ENST00000299543 RGS3P49796 1198 aa17.55■□□□□ 0.4
CTDP1-202ENST00000299543 BACH2Q9BYV9 841 aa17.54■□□□□ 0.4
CTDP1-202ENST00000299543 CHD1O14646 1710 aa17.54■□□□□ 0.4
CTDP1-202ENST00000299543 PLEKHH1Q9ULM0 1364 aa17.54■□□□□ 0.4
CTDP1-202ENST00000299543 NUTM2DQ5VT03 806 aaPredicted RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms