RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 WDR43Q15061 677 aaKnown RBP eCLIP19.33■□□□□ 0.68
CCNF-201ENST00000293968 DDRGK1Q96HY6 314 aa19.33■□□□□ 0.68
CCNF-201ENST00000293968 LRPPRCP42704 1394 aaKnown RBP19.33■□□□□ 0.68
CCNF-201ENST00000293968 KIF21AQ7Z4S6 1674 aa19.33■□□□□ 0.68
CCNF-201ENST00000293968 PLB1Q6P1J6 1458 aa19.32■□□□□ 0.68
CCNF-201ENST00000293968 MS4A1P11836 297 aa19.32■□□□□ 0.68
CCNF-201ENST00000293968 C20orf194Q5TEA3 1177 aa19.32■□□□□ 0.68
CCNF-201ENST00000293968 GPATCH8Q9UKJ3 1502 aaKnown RBP19.31■□□□□ 0.68
CCNF-201ENST00000293968 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
CCNF-201ENST00000293968 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.29■□□□□ 0.68
CCNF-201ENST00000293968 MBD5Q9P267 1494 aa19.29■□□□□ 0.68
CCNF-201ENST00000293968 RALGAPBQ86X10 1494 aa19.29■□□□□ 0.68
CCNF-201ENST00000293968 C9orf84Q5VXU9 1444 aa19.27■□□□□ 0.68
CCNF-201ENST00000293968 KDM5CP41229 1560 aa19.27■□□□□ 0.68
CCNF-201ENST00000293968 KIAA0586Q9BVV6 1533 aa19.27■□□□□ 0.68
CCNF-201ENST00000293968 JPH4Q96JJ6 628 aa19.26■□□□□ 0.67
CCNF-201ENST00000293968 ADAMTS12P58397 1594 aa19.26■□□□□ 0.67
CCNF-201ENST00000293968 TMF1P82094 1093 aa19.26■□□□□ 0.67
CCNF-201ENST00000293968 ADAMTS8Q9UP79 889 aa19.26■□□□□ 0.67
CCNF-201ENST00000293968 DISP1Q96F81 1524 aa19.26■□□□□ 0.67
CCNF-201ENST00000293968 USP35Q9P2H5 1018 aa19.26■□□□□ 0.67
CCNF-201ENST00000293968 TARBP1Q13395 1621 aaKnown RBP19.26■□□□□ 0.67
CCNF-201ENST00000293968 KIF14Q15058 1648 aa19.25■□□□□ 0.67
CCNF-201ENST00000293968 KNSTRNQ9Y448 316 aa19.25■□□□□ 0.67
CCNF-201ENST00000293968 CCDC144AA2RUR9 1427 aa19.24■□□□□ 0.67
CCNF-201ENST00000293968 RAPGEF6Q8TEU7 1601 aa19.23■□□□□ 0.67
CCNF-201ENST00000293968 CCDC146Q8IYE0 955 aa19.22■□□□□ 0.67
CCNF-201ENST00000293968 BRPF3Q9ULD4 1205 aa19.22■□□□□ 0.67
CCNF-201ENST00000293968 KIAA0556O60303 1618 aa19.22■□□□□ 0.67
CCNF-201ENST00000293968 PBRM1Q86U86 1689 aa19.21■□□□□ 0.67
CCNF-201ENST00000293968 NFKBIBQ15653 356 aa19.21■□□□□ 0.67
CCNF-201ENST00000293968 UHRF1BP1Q6BDS2 1440 aa19.21■□□□□ 0.67
CCNF-201ENST00000293968 PER1O15534 1290 aaPredicted RBP19.2■□□□□ 0.66
CCNF-201ENST00000293968 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.2■□□□□ 0.66
CCNF-201ENST00000293968 PARD3Q8TEW0 1356 aa19.2■□□□□ 0.66
CCNF-201ENST00000293968 DISP3Q9P2K9 1392 aa19.19■□□□□ 0.66
CCNF-201ENST00000293968 CANXP27824 592 aaKnown RBP19.19■□□□□ 0.66
CCNF-201ENST00000293968 GSE1Q14687 1217 aa19.19■□□□□ 0.66
CCNF-201ENST00000293968 CARMIL2Q6F5E8 1435 aa19.19■□□□□ 0.66
CCNF-201ENST00000293968 POLR1AO95602 1720 aaPredicted RBP19.19■□□□□ 0.66
CCNF-201ENST00000293968 EIF5BO60841 1220 aaKnown RBP19.17■□□□□ 0.66
CCNF-201ENST00000293968 GOLGA2Q08379 1002 aa19.16■□□□□ 0.66
CCNF-201ENST00000293968 CENPQQ7L2Z9 268 aaPredicted RBP19.16■□□□□ 0.66
CCNF-201ENST00000293968 MRC2Q9UBG0 1479 aa19.15■□□□□ 0.66
CCNF-201ENST00000293968 FAM161AQ3B820 660 aa19.15■□□□□ 0.66
CCNF-201ENST00000293968 GRIN2AQ12879 1464 aa19.14■□□□□ 0.66
CCNF-201ENST00000293968 FRAT1Q92837 279 aaPredicted RBP19.14■□□□□ 0.65
CCNF-201ENST00000293968 ADGRL2O95490 1459 aa19.14■□□□□ 0.65
CCNF-201ENST00000293968 ARXQ96QS3 562 aa19.12■□□□□ 0.65
CCNF-201ENST00000293968 TESK2Q96S53 571 aa19.11■□□□□ 0.65
CCNF-201ENST00000293968 PPP2R1AP30153 589 aa19.11■□□□□ 0.65
CCNF-201ENST00000293968 ARHGEF12Q9NZN5 1544 aa19.1■□□□□ 0.65
CCNF-201ENST00000293968 NEUROD2Q15784 382 aa19.1■□□□□ 0.65
CCNF-201ENST00000293968 ERBINQ96RT1 1412 aa19.1■□□□□ 0.65
CCNF-201ENST00000293968 PRAG1Q86YV5 1406 aa19.1■□□□□ 0.65
CCNF-201ENST00000293968 IFT140Q96RY7 1462 aa19.1■□□□□ 0.65
CCNF-201ENST00000293968 FRAT2O75474 233 aaPredicted RBP19.1■□□□□ 0.65
CCNF-201ENST00000293968 ITSN2Q9NZM3 1697 aa19.09■□□□□ 0.65
CCNF-201ENST00000293968 APAF1O14727 1248 aa19.09■□□□□ 0.65
CCNF-201ENST00000293968 PRKCSHP14314 528 aaPredicted RBP19.08■□□□□ 0.65
CCNF-201ENST00000293968 DUSP27Q5VZP5 1158 aa19.08■□□□□ 0.65
CCNF-201ENST00000293968 ADGBQ8N7X0 1667 aa19.08■□□□□ 0.64
CCNF-201ENST00000293968 MAGI1Q96QZ7 1491 aaPredicted RBP19.07■□□□□ 0.64
CCNF-201ENST00000293968 WASHC2CQ9Y4E1 1318 aa19.07■□□□□ 0.64
CCNF-201ENST00000293968 BCAR3O75815 825 aa19.07■□□□□ 0.64
CCNF-201ENST00000293968 PLEKHH1Q9ULM0 1364 aa19.06■□□□□ 0.64
CCNF-201ENST00000293968 TNNT2P45379 298 aaPredicted RBP19.05■□□□□ 0.64
CCNF-201ENST00000293968 SLKQ9H2G2 1235 aaPredicted RBP19.05■□□□□ 0.64
CCNF-201ENST00000293968 C8orf34Q49A92 452 aa19.04■□□□□ 0.64
CCNF-201ENST00000293968 KDM2BQ8NHM5 1336 aa19.02■□□□□ 0.64
CCNF-201ENST00000293968 FAM135AQ9P2D6 1515 aa19.02■□□□□ 0.64
CCNF-201ENST00000293968 ATP10BO94823 1461 aa19.01■□□□□ 0.63
CCNF-201ENST00000293968 ERCC6Q03468 1493 aa19.01■□□□□ 0.63
CCNF-201ENST00000293968 CDCA8Q53HL2 280 aa19■□□□□ 0.63
CCNF-201ENST00000293968 COG6Q9Y2V7 657 aa19■□□□□ 0.63
CCNF-201ENST00000293968 BLMP54132 1417 aaPredicted RBP19■□□□□ 0.63
CCNF-201ENST00000293968 COL17A1Q9UMD9 1497 aaPredicted RBP19■□□□□ 0.63
CCNF-201ENST00000293968 SPINK5Q9NQ38 1064 aaPredicted RBP18.99■□□□□ 0.63
CCNF-201ENST00000293968 SLFN5Q08AF3 891 aa18.99■□□□□ 0.63
CCNF-201ENST00000293968 RSPH4AQ5TD94 716 aa18.99■□□□□ 0.63
CCNF-201ENST00000293968 SPRYD3Q8NCJ5 442 aa18.98■□□□□ 0.63
CCNF-201ENST00000293968 PANK1Q8TE04 598 aa18.98■□□□□ 0.63
CCNF-201ENST00000293968 A2MP01023 1474 aa18.98■□□□□ 0.63
CCNF-201ENST00000293968 RRP7AQ9Y3A4 280 aaKnown RBP18.98■□□□□ 0.63
CCNF-201ENST00000293968 PTPRGP23470 1445 aa18.97■□□□□ 0.63
CCNF-201ENST00000293968 CCDC141Q6ZP82 1450 aa18.97■□□□□ 0.63
CCNF-201ENST00000293968 CEP170Q5SW79 1584 aa18.96■□□□□ 0.63
CCNF-201ENST00000293968 SHANK2Q9UPX8 1470 aa18.96■□□□□ 0.63
CCNF-201ENST00000293968 BCL2L13Q9BXK5 485 aa18.95■□□□□ 0.62
CCNF-201ENST00000293968 IGHDP01880 384 aa18.95■□□□□ 0.62
CCNF-201ENST00000293968 BECN1Q14457 450 aa18.95■□□□□ 0.62
CCNF-201ENST00000293968 AMER1Q5JTC6 1135 aaPredicted RBP18.95■□□□□ 0.62
CCNF-201ENST00000293968 KDM5DQ9BY66 1539 aa18.95■□□□□ 0.62
CCNF-201ENST00000293968 ZMYM4Q5VZL5 1548 aa18.94■□□□□ 0.62
CCNF-201ENST00000293968 PLEKHH2Q8IVE3 1493 aa18.94■□□□□ 0.62
CCNF-201ENST00000293968 UPF2Q9HAU5 1272 aaKnown RBP18.93■□□□□ 0.62
CCNF-201ENST00000293968 CROCC2H7BZ55 1655 aa18.93■□□□□ 0.62
CCNF-201ENST00000293968 CLUAP1Q96AJ1 413 aa18.93■□□□□ 0.62
CCNF-201ENST00000293968 ABCC10Q5T3U5 1492 aa18.93■□□□□ 0.62
CCNF-201ENST00000293968 CHGAP10645 457 aaKnown RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms