RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 MAP3K1Q13233 1512 aa11.53□□□□□ -0.56
VAPB-201ENST00000265619 EIF4G2P78344 907 aaKnown RBP eCLIP11.53□□□□□ -0.56
VAPB-201ENST00000265619 OSCARQ8IYS5 282 aa11.53□□□□□ -0.56
VAPB-201ENST00000265619 TSPY4P0CV99 314 aa11.52□□□□□ -0.56
VAPB-201ENST00000265619 TSPY10P0CW01 314 aa11.52□□□□□ -0.56
VAPB-201ENST00000265619 NCOA1Q15788 1441 aa11.52□□□□□ -0.56
VAPB-201ENST00000265619 AAMPQ13685 434 aa11.52□□□□□ -0.57
VAPB-201ENST00000265619 SLC4A1APQ9BWU0 796 aaKnown RBP11.52□□□□□ -0.57
VAPB-201ENST00000265619 ARHGEF11O15085 1522 aa11.52□□□□□ -0.57
VAPB-201ENST00000265619 KIF7Q2M1P5 1343 aa11.51□□□□□ -0.57
VAPB-201ENST00000265619 POLR3GLQ9BT43 218 aa11.51□□□□□ -0.57
VAPB-201ENST00000265619 PNNQ9H307 717 aaKnown RBP11.51□□□□□ -0.57
VAPB-201ENST00000265619 CYB5RLQ6IPT4 315 aa11.51□□□□□ -0.57
VAPB-201ENST00000265619 PTPN23Q9H3S7 1636 aa11.5□□□□□ -0.57
VAPB-201ENST00000265619 PRDM4Q9UKN5 801 aa11.5□□□□□ -0.57
VAPB-201ENST00000265619 NPM1P06748 294 aaKnown RBP eCLIP11.5□□□□□ -0.57
VAPB-201ENST00000265619 RGS3P49796 1198 aa11.5□□□□□ -0.57
VAPB-201ENST00000265619 TROQ12816 1431 aaPredicted RBP11.49□□□□□ -0.57
VAPB-201ENST00000265619 ATP10BO94823 1461 aa11.49□□□□□ -0.57
VAPB-201ENST00000265619 PDIA4P13667 645 aaKnown RBP11.49□□□□□ -0.57
VAPB-201ENST00000265619 XRCC6P12956 609 aaKnown RBP eCLIP11.48□□□□□ -0.57
VAPB-201ENST00000265619 HOMEZQ8IX15 550 aa11.48□□□□□ -0.57
VAPB-201ENST00000265619 C8orf34Q49A92 452 aa11.48□□□□□ -0.57
VAPB-201ENST00000265619 KIF14Q15058 1648 aa11.48□□□□□ -0.57
VAPB-201ENST00000265619 ERBB4Q15303 1308 aa11.47□□□□□ -0.57
VAPB-201ENST00000265619 DHX29Q7Z478 1369 aaKnown RBP11.47□□□□□ -0.57
VAPB-201ENST00000265619 CLCN1P35523 988 aa11.47□□□□□ -0.57
VAPB-201ENST00000265619 NBPF8Q3BBV2 869 aa11.47□□□□□ -0.57
VAPB-201ENST00000265619 PNISRQ8TF01 805 aaKnown RBP11.47□□□□□ -0.57
VAPB-201ENST00000265619 SENP3Q9H4L4 574 aaPredicted RBP11.47□□□□□ -0.57
VAPB-201ENST00000265619 RCAN3Q9UKA8 241 aa11.47□□□□□ -0.57
VAPB-201ENST00000265619 UACAQ9BZF9 1416 aa11.47□□□□□ -0.57
VAPB-201ENST00000265619 FGD1P98174 961 aa11.46□□□□□ -0.58
VAPB-201ENST00000265619 CRBNQ96SW2 442 aa11.46□□□□□ -0.58
VAPB-201ENST00000265619 C20orf194Q5TEA3 1177 aa11.46□□□□□ -0.58
VAPB-201ENST00000265619 CDCA7LQ96GN5 454 aa11.46□□□□□ -0.58
VAPB-201ENST00000265619 MPHOSPH9Q99550 1183 aa11.46□□□□□ -0.58
VAPB-201ENST00000265619 DENND4BO75064 1496 aaPredicted RBP11.45□□□□□ -0.58
VAPB-201ENST00000265619 PDE4CQ08493 712 aa11.45□□□□□ -0.58
VAPB-201ENST00000265619 L3MBTL2Q969R5 705 aa11.45□□□□□ -0.58
VAPB-201ENST00000265619 KDM2AQ9Y2K7 1162 aa11.44□□□□□ -0.58
VAPB-201ENST00000265619 NAIPQ13075 1403 aa11.44□□□□□ -0.58
VAPB-201ENST00000265619 SLKQ9H2G2 1235 aaPredicted RBP11.43□□□□□ -0.58
VAPB-201ENST00000265619 GZF1Q9H116 711 aaPredicted RBP11.43□□□□□ -0.58
VAPB-201ENST00000265619 SHROOM2Q13796 1616 aa11.43□□□□□ -0.58
VAPB-201ENST00000265619 DAPK1P53355 1430 aa11.42□□□□□ -0.58
VAPB-201ENST00000265619 CAMSAP2Q08AD1 1489 aa11.42□□□□□ -0.58
VAPB-201ENST00000265619 GPATCH8Q9UKJ3 1502 aaKnown RBP11.41□□□□□ -0.58
VAPB-201ENST00000265619 PKD2Q13563 968 aa11.41□□□□□ -0.58
VAPB-201ENST00000265619 RGL3Q3MIN7 710 aa11.41□□□□□ -0.58
VAPB-201ENST00000265619 AFAP1Q8N556 730 aa11.41□□□□□ -0.58
VAPB-201ENST00000265619 ABCC5O15440 1437 aa11.41□□□□□ -0.58
VAPB-201ENST00000265619 HFM1A2PYH4 1435 aa11.4□□□□□ -0.58
VAPB-201ENST00000265619 ARHGAP5Q13017 1502 aa11.39□□□□□ -0.59
VAPB-201ENST00000265619 CLASP1Q7Z460 1538 aa11.39□□□□□ -0.59
VAPB-201ENST00000265619 USP19O94966 1318 aa11.39□□□□□ -0.59
VAPB-201ENST00000265619 KDM2BQ8NHM5 1336 aa11.39□□□□□ -0.59
VAPB-201ENST00000265619 SEC24BO95487 1268 aa11.38□□□□□ -0.59
VAPB-201ENST00000265619 KDM6BO15054 1643 aa11.38□□□□□ -0.59
VAPB-201ENST00000265619 NUP155O75694 1391 aa11.38□□□□□ -0.59
VAPB-201ENST00000265619 FAM161AQ3B820 660 aa11.38□□□□□ -0.59
VAPB-201ENST00000265619 TMC1Q8TDI8 760 aa11.38□□□□□ -0.59
VAPB-201ENST00000265619 SPATA31E1Q6ZUB1 1445 aa11.38□□□□□ -0.59
VAPB-201ENST00000265619 MIA2Q96PC5 1412 aa11.38□□□□□ -0.59
VAPB-201ENST00000265619 L1TD1Q5T7N2 865 aaKnown RBP11.37□□□□□ -0.59
VAPB-201ENST00000265619 FSD2A1L4K1 749 aa11.37□□□□□ -0.59
VAPB-201ENST00000265619 ABCA8O94911 1581 aa11.37□□□□□ -0.59
VAPB-201ENST00000265619 ANKRD30AQ9BXX3 1397 aa11.37□□□□□ -0.59
VAPB-201ENST00000265619 EFCAB2Q5VUJ9 269 aa11.37□□□□□ -0.59
VAPB-201ENST00000265619 BCORL1Q5H9F3 1711 aa11.36□□□□□ -0.59
VAPB-201ENST00000265619 ARID3AQ99856 593 aa11.36□□□□□ -0.59
VAPB-201ENST00000265619 CALD1Q05682 793 aaKnown RBP11.36□□□□□ -0.59
VAPB-201ENST00000265619 AMER1Q5JTC6 1135 aaPredicted RBP11.35□□□□□ -0.59
VAPB-201ENST00000265619 LRPPRCP42704 1394 aaKnown RBP11.35□□□□□ -0.59
VAPB-201ENST00000265619 KIF15Q9NS87 1388 aa11.35□□□□□ -0.59
VAPB-201ENST00000265619 GOLGA6L3A6NEY3 463 aa11.34□□□□□ -0.59
VAPB-201ENST00000265619 SPRYD3Q8NCJ5 442 aa11.34□□□□□ -0.59
VAPB-201ENST00000265619 POLR1AO95602 1720 aaPredicted RBP11.34□□□□□ -0.59
VAPB-201ENST00000265619 BCL11BQ9C0K0 894 aaPredicted RBP11.34□□□□□ -0.59
VAPB-201ENST00000265619 PDCL3Q9H2J4 239 aa11.34□□□□□ -0.59
VAPB-201ENST00000265619 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.34□□□□□ -0.593e-7■■■■□ 22
VAPB-201ENST00000265619 C9orf84Q5VXU9 1444 aa11.33□□□□□ -0.59
VAPB-201ENST00000265619 ANTXR1Q9H6X2 564 aa11.33□□□□□ -0.6
VAPB-201ENST00000265619 ESPNB1AK53 854 aa11.33□□□□□ -0.6
VAPB-201ENST00000265619 KTN1Q86UP2 1357 aaKnown RBP11.33□□□□□ -0.6
VAPB-201ENST00000265619 ZHX1Q9UKY1 873 aaPredicted RBP11.32□□□□□ -0.6
VAPB-201ENST00000265619 ANKRD50Q9ULJ7 1429 aa11.32□□□□□ -0.6
VAPB-201ENST00000265619 CHGAP10645 457 aaKnown RBP11.32□□□□□ -0.6
VAPB-201ENST00000265619 RIPK4P57078 832 aa11.31□□□□□ -0.6
VAPB-201ENST00000265619 ABCC2Q92887 1545 aa11.31□□□□□ -0.6
VAPB-201ENST00000265619 PRDM10Q9NQV6 1147 aa11.31□□□□□ -0.6
VAPB-201ENST00000265619 SPAG9O60271 1321 aaKnown RBP11.31□□□□□ -0.6
VAPB-201ENST00000265619 TCOF1Q13428 1488 aaKnown RBP11.3□□□□□ -0.6
VAPB-201ENST00000265619 CENPJQ9HC77 1338 aaPredicted RBP11.3□□□□□ -0.6
VAPB-201ENST00000265619 KIAA1211Q6ZU35 1233 aa11.3□□□□□ -0.6
VAPB-201ENST00000265619 SYCP2Q9BX26 1530 aa11.3□□□□□ -0.6
VAPB-201ENST00000265619 GGT6Q6P531 493 aa11.29□□□□□ -0.6
VAPB-201ENST00000265619 TTC37Q6PGP7 1564 aa11.29□□□□□ -0.6
VAPB-201ENST00000265619 KIF3BO15066 747 aa11.29□□□□□ -0.6
VAPB-201ENST00000265619 RAPGEF3O95398 923 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms