RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 NISCHQ9Y2I1 1504 aa17.07■□□□□ 0.32
VAPB-201ENST00000265619 DCAF8L2P0C7V8 631 aa15.08■□□□□ 0.01
VAPB-201ENST00000265619 HRCP23327 699 aa15.06■□□□□ 0
VAPB-201ENST00000265619 PPARGC1BQ86YN6 1023 aaKnown RBP14.99□□□□□ -0.01
VAPB-201ENST00000265619 SHROOM4Q9ULL8 1493 aa14.86□□□□□ -0.03
VAPB-201ENST00000265619 PELP1Q8IZL8 1130 aaKnown RBP14.8□□□□□ -0.04
VAPB-201ENST00000265619 CCDC180Q9P1Z9 1646 aa14.78□□□□□ -0.04
VAPB-201ENST00000265619 PCGF6Q9BYE7 350 aa14.68□□□□□ -0.06
VAPB-201ENST00000265619 SCAF1Q9H7N4 1312 aaKnown RBP14.59□□□□□ -0.07
VAPB-201ENST00000265619 MYO15BQ96JP2 1530 aa14.49□□□□□ -0.09
VAPB-201ENST00000265619 SUPT5HO00267 1087 aaKnown RBP14.39□□□□□ -0.11
VAPB-201ENST00000265619 ABCC9O60706 1549 aa14.37□□□□□ -0.11
VAPB-201ENST00000265619 ZCCHC6Q5VYS8 1495 aaKnown RBP14.29□□□□□ -0.12
VAPB-201ENST00000265619 MYT1Q01538 1121 aa14.21□□□□□ -0.13
VAPB-201ENST00000265619 CHIC1Q5VXU3 224 aa14.13□□□□□ -0.15
VAPB-201ENST00000265619 NEUROD1Q13562 356 aa14.04□□□□□ -0.16
VAPB-201ENST00000265619 LOC105371045A0A1W2PR82 267 aa13.99□□□□□ -0.17
VAPB-201ENST00000265619 ACIN1Q9UKV3 1341 aaKnown RBP13.98□□□□□ -0.17
VAPB-201ENST00000265619 GTF3C3Q9Y5Q9 886 aa13.96□□□□□ -0.18
VAPB-201ENST00000265619 DCAF1Q9Y4B6 1507 aa13.95□□□□□ -0.18
VAPB-201ENST00000265619 SCRIBQ14160 1630 aa13.94□□□□□ -0.18
VAPB-201ENST00000265619 TRIM26Q12899 539 aaPredicted RBP13.93□□□□□ -0.18
VAPB-201ENST00000265619 PABPN1Q86U42 306 aaKnown RBP eCLIP13.81□□□□□ -0.2
VAPB-201ENST00000265619 ZEB1P37275 1124 aaPredicted RBP13.77□□□□□ -0.2
VAPB-201ENST00000265619 NACADO15069 1562 aa13.67□□□□□ -0.22
VAPB-201ENST00000265619 SLC24A1O60721 1099 aa13.67□□□□□ -0.22
VAPB-201ENST00000265619 BCL11AQ9H165 835 aa13.67□□□□□ -0.22
VAPB-201ENST00000265619 FAM9AQ8IZU1 332 aaPredicted RBP13.66□□□□□ -0.22
VAPB-201ENST00000265619 RB1CC1Q8TDY2 1594 aa13.6□□□□□ -0.23
VAPB-201ENST00000265619 AEBP2Q6ZN18 517 aaPredicted RBP13.6□□□□□ -0.23
VAPB-201ENST00000265619 CENPBP07199 599 aaPredicted RBP13.58□□□□□ -0.24
VAPB-201ENST00000265619 EHMT2Q96KQ7 1210 aa13.55□□□□□ -0.24
VAPB-201ENST00000265619 DIEXFQ68CQ4 756 aaKnown RBP13.54□□□□□ -0.24
VAPB-201ENST00000265619 CECR2Q9BXF3 1484 aa13.52□□□□□ -0.25
VAPB-201ENST00000265619 TTBK1Q5TCY1 1321 aaPredicted RBP13.52□□□□□ -0.25
VAPB-201ENST00000265619 YTHDC1Q96MU7 727 aaKnown RBP13.5□□□□□ -0.25
VAPB-201ENST00000265619 UNC13AQ9UPW8 1703 aa13.5□□□□□ -0.25
VAPB-201ENST00000265619 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.49□□□□□ -0.25
VAPB-201ENST00000265619 RSF1Q96T23 1441 aaPredicted RBP13.42□□□□□ -0.26
VAPB-201ENST00000265619 PRKCSHP14314 528 aaPredicted RBP13.42□□□□□ -0.26
VAPB-201ENST00000265619 CSRNP3Q8WYN3 585 aa13.36□□□□□ -0.27
VAPB-201ENST00000265619 MROH2BQ7Z745 1585 aa13.35□□□□□ -0.27
VAPB-201ENST00000265619 ANP32EQ9BTT0 268 aa13.35□□□□□ -0.27
VAPB-201ENST00000265619 CCER1Q8TC90 406 aaPredicted RBP13.34□□□□□ -0.27
VAPB-201ENST00000265619 TRIM41Q8WV44 630 aa13.29□□□□□ -0.28
VAPB-201ENST00000265619 WIZO95785 1651 aa13.27□□□□□ -0.28
VAPB-201ENST00000265619 BICRAQ9NZM4 1560 aa13.27□□□□□ -0.29
VAPB-201ENST00000265619 MIER1Q8N108 512 aa13.25□□□□□ -0.29
VAPB-201ENST00000265619 TSHZ2Q9NRE2 1034 aa13.24□□□□□ -0.29
VAPB-201ENST00000265619 ERICH6Q7L0X2 663 aa13.21□□□□□ -0.29
VAPB-201ENST00000265619 SUPT16HQ9Y5B9 1047 aaKnown RBP13.17□□□□□ -0.3
VAPB-201ENST00000265619 BAZ1AQ9NRL2 1556 aaPredicted RBP13.15□□□□□ -0.3
VAPB-201ENST00000265619 ZNF316A6NFI3 1004 aaPredicted RBP13.14□□□□□ -0.31
VAPB-201ENST00000265619 SMARCA4P51532 1647 aa13.09□□□□□ -0.31
VAPB-201ENST00000265619 RANGAP1P46060 587 aaPredicted RBP12.99□□□□□ -0.33
VAPB-201ENST00000265619 CCDC88BA6NC98 1476 aa12.99□□□□□ -0.33
VAPB-201ENST00000265619 BAZ1BQ9UIG0 1483 aaKnown RBP12.96□□□□□ -0.33
VAPB-201ENST00000265619 BCANQ96GW7 911 aa12.95□□□□□ -0.34
VAPB-201ENST00000265619 ABCC8Q09428 1581 aa12.94□□□□□ -0.34
VAPB-201ENST00000265619 TOP2AP11388 1531 aaKnown RBP12.93□□□□□ -0.34
VAPB-201ENST00000265619 ATAD2BQ9ULI0 1458 aa12.92□□□□□ -0.34
VAPB-201ENST00000265619 MSH5O43196 834 aa12.89□□□□□ -0.35
VAPB-201ENST00000265619 ANO8Q9HCE9 1232 aaPredicted RBP12.89□□□□□ -0.35
VAPB-201ENST00000265619 SMARCA2P51531 1590 aa12.87□□□□□ -0.35
VAPB-201ENST00000265619 EIF4G1Q04637 1599 aaKnown RBP12.86□□□□□ -0.35
VAPB-201ENST00000265619 PEG3Q9GZU2 1588 aa12.86□□□□□ -0.35
VAPB-201ENST00000265619 RBM19Q9Y4C8 960 aaKnown RBP12.85□□□□□ -0.35
VAPB-201ENST00000265619 APLP2Q06481 763 aa12.85□□□□□ -0.35
VAPB-201ENST00000265619 UBTFP17480 764 aaKnown RBP12.83□□□□□ -0.36
VAPB-201ENST00000265619 DNAJC5BQ9UF47 199 aa12.8□□□□□ -0.36
VAPB-201ENST00000265619 KCNH8Q96L42 1107 aa12.8□□□□□ -0.36
VAPB-201ENST00000265619 DAXXQ9UER7 740 aaPredicted RBP12.8□□□□□ -0.36
VAPB-201ENST00000265619 CLSPNQ9HAW4 1339 aa12.77□□□□□ -0.37
VAPB-201ENST00000265619 ITGAEP38570 1179 aa12.76□□□□□ -0.37
VAPB-201ENST00000265619 FKBP8Q14318 412 aa12.74□□□□□ -0.37
VAPB-201ENST00000265619 SOGA1O94964 1423 aa12.74□□□□□ -0.37
VAPB-201ENST00000265619 WRNQ14191 1432 aaPredicted RBP eCLIP12.71□□□□□ -0.37
VAPB-201ENST00000265619 CC2D2AQ9P2K1 1620 aa12.7□□□□□ -0.38
VAPB-201ENST00000265619 SALL2Q9Y467 1007 aaPredicted RBP12.7□□□□□ -0.38
VAPB-201ENST00000265619 HNRNPUL2Q1KMD3 747 aaKnown RBP12.7□□□□□ -0.38
VAPB-201ENST00000265619 RUSC2Q8N2Y8 1516 aa12.69□□□□□ -0.38
VAPB-201ENST00000265619 CCDC136Q96JN2 1154 aa12.69□□□□□ -0.38
VAPB-201ENST00000265619 DEKP35659 375 aaKnown RBP12.65□□□□□ -0.38
VAPB-201ENST00000265619 NCAPD3P42695 1498 aa12.64□□□□□ -0.39
VAPB-201ENST00000265619 HMGXB3Q12766 1538 aa12.63□□□□□ -0.39
VAPB-201ENST00000265619 NESP48681 1621 aa12.59□□□□□ -0.39
VAPB-201ENST00000265619 SYNJ1O43426 1573 aa12.58□□□□□ -0.4
VAPB-201ENST00000265619 CEP162Q5TB80 1403 aa12.55□□□□□ -0.4
VAPB-201ENST00000265619 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.53□□□□□ -0.4
VAPB-201ENST00000265619 CADPSQ9ULU8 1353 aa12.52□□□□□ -0.4
VAPB-201ENST00000265619 ATP1B4Q9UN42 357 aaPredicted RBP12.51□□□□□ -0.41
VAPB-201ENST00000265619 FANCIQ9NVI1 1328 aa12.5□□□□□ -0.41
VAPB-201ENST00000265619 RTN4Q9NQC3 1192 aaKnown RBP12.49□□□□□ -0.41
VAPB-201ENST00000265619 IL27Q8NEV9 243 aa12.49□□□□□ -0.41
VAPB-201ENST00000265619 NBR1Q14596 966 aa12.47□□□□□ -0.41
VAPB-201ENST00000265619 P3H3Q8IVL6 736 aa12.47□□□□□ -0.41
VAPB-201ENST00000265619 TRIM52Q96A61 297 aa12.46□□□□□ -0.41
VAPB-201ENST00000265619 CFTRP13569 1480 aa12.46□□□□□ -0.42
VAPB-201ENST00000265619 IRX6P78412 446 aaPredicted RBP12.45□□□□□ -0.42
VAPB-201ENST00000265619 EIF5BO60841 1220 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms