RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 CEP152O94986 1710 aa15.7■□□□□ 0.1
MSH3-201ENST00000265081 PKD2Q13563 968 aa15.69■□□□□ 0.1
MSH3-201ENST00000265081 C11orf95C9JLR9 678 aaPredicted RBP15.69■□□□□ 0.1
MSH3-201ENST00000265081 ZNF777Q9ULD5 760 aaPredicted RBP15.68■□□□□ 0.1
MSH3-201ENST00000265081 HNRNPMP52272 730 aaKnown RBP eCLIP15.68■□□□□ 0.13e-11■■■■■ 38.2
MSH3-201ENST00000265081 PRDM15P57071 1507 aaPredicted RBP15.68■□□□□ 0.1
MSH3-201ENST00000265081 TSPY4P0CV99 314 aa15.67■□□□□ 0.1
MSH3-201ENST00000265081 TSPY10P0CW01 314 aa15.67■□□□□ 0.1
MSH3-201ENST00000265081 TET3O43151 1660 aa15.66■□□□□ 0.1
MSH3-201ENST00000265081 SPHKAPQ2M3C7 1700 aa15.66■□□□□ 0.1
MSH3-201ENST00000265081 GPRASP1Q5JY77 1395 aa15.66■□□□□ 0.1
MSH3-201ENST00000265081 DHX29Q7Z478 1369 aaKnown RBP15.66■□□□□ 0.1
MSH3-201ENST00000265081 MROH1Q8NDA8 1641 aa15.66■□□□□ 0.1
MSH3-201ENST00000265081 PRAG1Q86YV5 1406 aa15.65■□□□□ 0.1
MSH3-201ENST00000265081 TRPM2O94759 1503 aa15.65■□□□□ 0.1
MSH3-201ENST00000265081 SUPT16HQ9Y5B9 1047 aaKnown RBP15.64■□□□□ 0.09
MSH3-201ENST00000265081 KIF7Q2M1P5 1343 aa15.64■□□□□ 0.09
MSH3-201ENST00000265081 USP47Q96K76 1375 aa15.63■□□□□ 0.09
MSH3-201ENST00000265081 A2MP01023 1474 aa15.63■□□□□ 0.09
MSH3-201ENST00000265081 TRAPPC8Q9Y2L5 1435 aa15.62■□□□□ 0.09
MSH3-201ENST00000265081 IQGAP1P46940 1657 aa15.62■□□□□ 0.09
MSH3-201ENST00000265081 KIAA1210Q9ULL0 1709 aa15.61■□□□□ 0.09
MSH3-201ENST00000265081 MADDQ8WXG6 1647 aa15.61■□□□□ 0.09
MSH3-201ENST00000265081 CFAP74Q9C0B2 1584 aa15.61■□□□□ 0.09
MSH3-201ENST00000265081 ATP7AQ04656 1500 aa15.61■□□□□ 0.09
MSH3-201ENST00000265081 IFT172Q9UG01 1749 aa15.61■□□□□ 0.09
MSH3-201ENST00000265081 PTPRTO14522 1441 aa15.6■□□□□ 0.09
MSH3-201ENST00000265081 KIDINS220Q9ULH0 1771 aa15.58■□□□□ 0.09
MSH3-201ENST00000265081 ROCK2O75116 1388 aaKnown RBP15.58■□□□□ 0.08
MSH3-201ENST00000265081 PRKRIP1Q9H875 184 aaPredicted RBP15.57■□□□□ 0.08
MSH3-201ENST00000265081 LMTK2Q8IWU2 1503 aa15.57■□□□□ 0.08
MSH3-201ENST00000265081 CCDC144AA2RUR9 1427 aa15.57■□□□□ 0.08
MSH3-201ENST00000265081 CLTCL1P53675 1640 aa15.56■□□□□ 0.08
MSH3-201ENST00000265081 FANCAO15360 1455 aa15.54■□□□□ 0.08
MSH3-201ENST00000265081 EFCAB2Q5VUJ9 269 aa15.54■□□□□ 0.08
MSH3-201ENST00000265081 COL17A1Q9UMD9 1497 aaPredicted RBP15.52■□□□□ 0.08
MSH3-201ENST00000265081 KTN1Q86UP2 1357 aaKnown RBP15.51■□□□□ 0.07
MSH3-201ENST00000265081 EFCAB6Q5THR3 1501 aa15.5■□□□□ 0.07
MSH3-201ENST00000265081 ASXL2Q76L83 1435 aa15.5■□□□□ 0.07
MSH3-201ENST00000265081 PPRC1Q5VV67 1664 aaKnown RBP15.49■□□□□ 0.07
MSH3-201ENST00000265081 SCAPERQ9BY12 1400 aa15.48■□□□□ 0.07
MSH3-201ENST00000265081 FRMPD1Q5SYB0 1578 aa15.48■□□□□ 0.07
MSH3-201ENST00000265081 ZMYM4Q5VZL5 1548 aa15.48■□□□□ 0.07
MSH3-201ENST00000265081 MYO3AQ8NEV4 1616 aa15.48■□□□□ 0.07
MSH3-201ENST00000265081 ADGRL1O94910 1474 aa15.47■□□□□ 0.07
MSH3-201ENST00000265081 MROH2AA6NES4 1674 aa15.46■□□□□ 0.06
MSH3-201ENST00000265081 MYOM1P52179 1685 aa15.46■□□□□ 0.06
MSH3-201ENST00000265081 MYOM2P54296 1465 aa15.46■□□□□ 0.06
MSH3-201ENST00000265081 NRXN1Q9ULB1 1477 aa15.46■□□□□ 0.06
MSH3-201ENST00000265081 CCDC184Q52MB2 194 aa15.46■□□□□ 0.06
MSH3-201ENST00000265081 KIF1BO60333 1816 aa15.45■□□□□ 0.06
MSH3-201ENST00000265081 ZNF518AQ6AHZ1 1483 aa15.44■□□□□ 0.06
MSH3-201ENST00000265081 HECW2Q9P2P5 1572 aa15.44■□□□□ 0.06
MSH3-201ENST00000265081 MAP3K4Q9Y6R4 1608 aa15.44■□□□□ 0.06
MSH3-201ENST00000265081 MLH3Q9UHC1 1453 aa15.44■□□□□ 0.06
MSH3-201ENST00000265081 ZBED9Q6R2W3 1325 aa15.43■□□□□ 0.06
MSH3-201ENST00000265081 LRPPRCP42704 1394 aaKnown RBP15.42■□□□□ 0.06
MSH3-201ENST00000265081 INSRP06213 1382 aa15.42■□□□□ 0.06
MSH3-201ENST00000265081 ABCA6Q8N139 1617 aa15.42■□□□□ 0.06
MSH3-201ENST00000265081 STAC3Q96MF2 364 aa15.42■□□□□ 0.06
MSH3-201ENST00000265081 SYNMO15061 1565 aa15.42■□□□□ 0.06
MSH3-201ENST00000265081 CARD11Q9BXL7 1154 aa15.41■□□□□ 0.06
MSH3-201ENST00000265081 SPAG9O60271 1321 aaKnown RBP15.41■□□□□ 0.06
MSH3-201ENST00000265081 POGZQ7Z3K3 1410 aa15.41■□□□□ 0.06
MSH3-201ENST00000265081 ADGRB3O60242 1522 aa15.41■□□□□ 0.06
MSH3-201ENST00000265081 ZC3H13Q5T200 1668 aaKnown RBP15.41■□□□□ 0.06
MSH3-201ENST00000265081 RICTORQ6R327 1708 aa15.41■□□□□ 0.06
MSH3-201ENST00000265081 DCAF11Q8TEB1 546 aa15.41■□□□□ 0.06
MSH3-201ENST00000265081 PIK3C2BO00750 1634 aa15.4■□□□□ 0.06
MSH3-201ENST00000265081 PPLO60437 1756 aa15.4■□□□□ 0.06
MSH3-201ENST00000265081 PARD3Q8TEW0 1356 aa15.39■□□□□ 0.05
MSH3-201ENST00000265081 GLI2P10070 1586 aa15.39■□□□□ 0.05
MSH3-201ENST00000265081 SETBP1Q9Y6X0 1596 aa15.39■□□□□ 0.05
MSH3-201ENST00000265081 TESK2Q96S53 571 aa15.38■□□□□ 0.05
MSH3-201ENST00000265081 NEO1Q92859 1461 aa15.38■□□□□ 0.05
MSH3-201ENST00000265081 ST20-MTHFSA0A0A6YYL1 179 aa15.37■□□□□ 0.05
MSH3-201ENST00000265081 BRD4O60885 1362 aaPredicted RBP15.37■□□□□ 0.05
MSH3-201ENST00000265081 ERICH6BQ5W0A0 696 aa15.36■□□□□ 0.05
MSH3-201ENST00000265081 CAMSAP1Q5T5Y3 1602 aa15.36■□□□□ 0.05
MSH3-201ENST00000265081 SMG6Q86US8 1419 aaKnown RBP15.36■□□□□ 0.05
MSH3-201ENST00000265081 WASHC2CQ9Y4E1 1318 aa15.35■□□□□ 0.05
MSH3-201ENST00000265081 SIGLEC1Q9BZZ2 1709 aa15.35■□□□□ 0.05
MSH3-201ENST00000265081 AFAP1Q8N556 730 aa15.34■□□□□ 0.05
MSH3-201ENST00000265081 SCAF11Q99590 1463 aaKnown RBP15.34■□□□□ 0.05
MSH3-201ENST00000265081 DIP2CQ9Y2E4 1556 aa15.34■□□□□ 0.05
MSH3-201ENST00000265081 DISP3Q9P2K9 1392 aa15.34■□□□□ 0.05
MSH3-201ENST00000265081 PER1O15534 1290 aaPredicted RBP15.33■□□□□ 0.05
MSH3-201ENST00000265081 HNRNPUQ00839 825 aaKnown RBP eCLIP15.33■□□□□ 0.05
MSH3-201ENST00000265081 KDM5AP29375 1690 aaKnown RBP15.33■□□□□ 0.04
MSH3-201ENST00000265081 RALBP1Q15311 655 aa15.32■□□□□ 0.04
MSH3-201ENST00000265081 NBPF1Q3BBV0 1214 aa15.32■□□□□ 0.04
MSH3-201ENST00000265081 MRS2Q9HD23 443 aa15.32■□□□□ 0.04
MSH3-201ENST00000265081 ABCC3O15438 1527 aa15.31■□□□□ 0.04
MSH3-201ENST00000265081 RNF123Q5XPI4 1314 aa15.31■□□□□ 0.04
MSH3-201ENST00000265081 KANK1Q14678 1352 aa15.31■□□□□ 0.04
MSH3-201ENST00000265081 FKBP8Q14318 412 aa15.31■□□□□ 0.04
MSH3-201ENST00000265081 UGGT1Q9NYU2 1555 aa15.3■□□□□ 0.04
MSH3-201ENST00000265081 PNISRQ8TF01 805 aaKnown RBP15.3■□□□□ 0.04
MSH3-201ENST00000265081 MYBBP1AQ9BQG0 1328 aaKnown RBP15.3■□□□□ 0.04
MSH3-201ENST00000265081 ZNF326Q5BKZ1 582 aaKnown RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms