RNA–Protein interactions for RNA: ENST00000263071.8

SCARF1-201, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCARF1, Length 3,443 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-201ENST00000263071 NEUROD2Q15784 382 aa18.37■□□□□ 0.53
SCARF1-201ENST00000263071 C20orf194Q5TEA3 1177 aa18.37■□□□□ 0.53
SCARF1-201ENST00000263071 BBXQ8WY36 941 aaPredicted RBP18.37■□□□□ 0.53
SCARF1-201ENST00000263071 CUL7Q14999 1698 aa18.36■□□□□ 0.53
SCARF1-201ENST00000263071 PANK3Q9H999 370 aa18.36■□□□□ 0.53
SCARF1-201ENST00000263071 TNNT2P45379 298 aaPredicted RBP18.36■□□□□ 0.53
SCARF1-201ENST00000263071 UGGT2Q9NYU1 1516 aa18.35■□□□□ 0.53
SCARF1-201ENST00000263071 RPRD2Q5VT52 1461 aaKnown RBP18.35■□□□□ 0.53
SCARF1-201ENST00000263071 SMG6Q86US8 1419 aaKnown RBP18.35■□□□□ 0.53
SCARF1-201ENST00000263071 MYBBP1AQ9BQG0 1328 aaKnown RBP18.34■□□□□ 0.53
SCARF1-201ENST00000263071 CALD1Q05682 793 aaKnown RBP18.34■□□□□ 0.53
SCARF1-201ENST00000263071 DHX29Q7Z478 1369 aaKnown RBP18.33■□□□□ 0.53
SCARF1-201ENST00000263071 WDR43Q15061 677 aaKnown RBP eCLIP18.32■□□□□ 0.52
SCARF1-201ENST00000263071 ZNF608Q9ULD9 1512 aaPredicted RBP18.32■□□□□ 0.52
SCARF1-201ENST00000263071 NLRP13Q86W25 1043 aa18.31■□□□□ 0.52
SCARF1-201ENST00000263071 KIF15Q9NS87 1388 aa18.3■□□□□ 0.52
SCARF1-201ENST00000263071 FRAT2O75474 233 aaPredicted RBP18.3■□□□□ 0.52
SCARF1-201ENST00000263071 PDCL3Q9H2J4 239 aa18.3■□□□□ 0.52
SCARF1-201ENST00000263071 ANKRD30AQ9BXX3 1397 aa18.3■□□□□ 0.52
SCARF1-201ENST00000263071 NAP1L2Q9ULW6 460 aaPredicted RBP18.3■□□□□ 0.52
SCARF1-201ENST00000263071 KTN1Q86UP2 1357 aaKnown RBP18.3■□□□□ 0.52
SCARF1-201ENST00000263071 TCERG1O14776 1098 aaKnown RBP18.29■□□□□ 0.52
SCARF1-201ENST00000263071 CANXP27824 592 aaKnown RBP18.29■□□□□ 0.52
SCARF1-201ENST00000263071 L1TD1Q5T7N2 865 aaKnown RBP18.29■□□□□ 0.52
SCARF1-201ENST00000263071 LAMC3Q9Y6N6 1575 aa18.29■□□□□ 0.52
SCARF1-201ENST00000263071 KIF21AQ7Z4S6 1674 aa18.28■□□□□ 0.52
SCARF1-201ENST00000263071 RALBP1Q15311 655 aa18.27■□□□□ 0.52
SCARF1-201ENST00000263071 ANKRD50Q9ULJ7 1429 aa18.27■□□□□ 0.52
SCARF1-201ENST00000263071 JPH4Q96JJ6 628 aa18.27■□□□□ 0.52
SCARF1-201ENST00000263071 PRDM4Q9UKN5 801 aa18.27■□□□□ 0.51
SCARF1-201ENST00000263071 ADAMTS8Q9UP79 889 aa18.27■□□□□ 0.51
SCARF1-201ENST00000263071 ABCA5Q8WWZ7 1642 aa18.27■□□□□ 0.51
SCARF1-201ENST00000263071 CHMP4BQ9H444 224 aaKnown RBP18.26■□□□□ 0.51
SCARF1-201ENST00000263071 SAMD9Q5K651 1589 aa18.26■□□□□ 0.51
SCARF1-201ENST00000263071 PAXIP1Q6ZW49 1069 aaPredicted RBP18.26■□□□□ 0.51
SCARF1-201ENST00000263071 PLB1Q6P1J6 1458 aa18.25■□□□□ 0.51
SCARF1-201ENST00000263071 MIA2Q96PC5 1412 aa18.25■□□□□ 0.51
SCARF1-201ENST00000263071 TEX14Q8IWB6 1497 aa18.25■□□□□ 0.51
SCARF1-201ENST00000263071 CHGAP10645 457 aaKnown RBP18.24■□□□□ 0.51
SCARF1-201ENST00000263071 CLCN1P35523 988 aa18.24■□□□□ 0.51
SCARF1-201ENST00000263071 KNSTRNQ9Y448 316 aa18.24■□□□□ 0.51
SCARF1-201ENST00000263071 SPATA31E1Q6ZUB1 1445 aa18.24■□□□□ 0.51
SCARF1-201ENST00000263071 KIAA1107Q9UPP5 1409 aa18.24■□□□□ 0.51
SCARF1-201ENST00000263071 BACH2Q9BYV9 841 aa18.23■□□□□ 0.51
SCARF1-201ENST00000263071 KLHL34Q8N239 644 aa18.23■□□□□ 0.51
SCARF1-201ENST00000263071 SPRYD3Q8NCJ5 442 aa18.23■□□□□ 0.51
SCARF1-201ENST00000263071 HECW1Q76N89 1606 aa18.19■□□□□ 0.5
SCARF1-201ENST00000263071 IQGAP2Q13576 1575 aa18.19■□□□□ 0.5
SCARF1-201ENST00000263071 TMF1P82094 1093 aa18.18■□□□□ 0.5
SCARF1-201ENST00000263071 RRP7AQ9Y3A4 280 aaKnown RBP18.18■□□□□ 0.5
SCARF1-201ENST00000263071 BCL2L13Q9BXK5 485 aa18.17■□□□□ 0.5
SCARF1-201ENST00000263071 SLKQ9H2G2 1235 aaPredicted RBP18.17■□□□□ 0.5
SCARF1-201ENST00000263071 PZPP20742 1482 aa18.17■□□□□ 0.5
SCARF1-201ENST00000263071 TCOF1Q13428 1488 aaKnown RBP18.16■□□□□ 0.5
SCARF1-201ENST00000263071 CAMSAP2Q08AD1 1489 aa18.16■□□□□ 0.5
SCARF1-201ENST00000263071 NCLP19338 710 aaKnown RBP18.15■□□□□ 0.5
SCARF1-201ENST00000263071 APAF1O14727 1248 aa18.15■□□□□ 0.5
SCARF1-201ENST00000263071 TPM2P07951 284 aa18.15■□□□□ 0.5
SCARF1-201ENST00000263071 POGKQ9P215 609 aa18.15■□□□□ 0.5
SCARF1-201ENST00000263071 TARBP1Q13395 1621 aaKnown RBP18.15■□□□□ 0.5
SCARF1-201ENST00000263071 ROCK1Q13464 1354 aa18.15■□□□□ 0.5
SCARF1-201ENST00000263071 ZHX1Q9UKY1 873 aaPredicted RBP18.14■□□□□ 0.5
SCARF1-201ENST00000263071 CENPJQ9HC77 1338 aaPredicted RBP18.14■□□□□ 0.5
SCARF1-201ENST00000263071 BRD4O60885 1362 aaPredicted RBP18.14■□□□□ 0.49
SCARF1-201ENST00000263071 NUP153P49790 1475 aaKnown RBP18.14■□□□□ 0.49
SCARF1-201ENST00000263071 BCAR3O75815 825 aa18.13■□□□□ 0.49
SCARF1-201ENST00000263071 CLUAP1Q96AJ1 413 aa18.13■□□□□ 0.49
SCARF1-201ENST00000263071 CCDC144AA2RUR9 1427 aa18.12■□□□□ 0.49
SCARF1-201ENST00000263071 MS4A1P11836 297 aa18.12■□□□□ 0.49
SCARF1-201ENST00000263071 DISP3Q9P2K9 1392 aa18.11■□□□□ 0.49
SCARF1-201ENST00000263071 RNF123Q5XPI4 1314 aa18.11■□□□□ 0.49
SCARF1-201ENST00000263071 ARHGEF11O15085 1522 aa18.1■□□□□ 0.49
SCARF1-201ENST00000263071 TROQ12816 1431 aaPredicted RBP18.1■□□□□ 0.49
SCARF1-201ENST00000263071 GTF2E1P29083 439 aaPredicted RBP18.1■□□□□ 0.49
SCARF1-201ENST00000263071 ARID3AQ99856 593 aa18.09■□□□□ 0.49
SCARF1-201ENST00000263071 BCORL1Q5H9F3 1711 aa18.09■□□□□ 0.49
SCARF1-201ENST00000263071 C9orf84Q5VXU9 1444 aa18.09■□□□□ 0.49
SCARF1-201ENST00000263071 WDR62O43379 1518 aa18.09■□□□□ 0.49
SCARF1-201ENST00000263071 GOLGA2Q08379 1002 aa18.08■□□□□ 0.49
SCARF1-201ENST00000263071 COG6Q9Y2V7 657 aa18.08■□□□□ 0.48
SCARF1-201ENST00000263071 GZF1Q9H116 711 aaPredicted RBP18.08■□□□□ 0.48
SCARF1-201ENST00000263071 GPATCH8Q9UKJ3 1502 aaKnown RBP18.07■□□□□ 0.48
SCARF1-201ENST00000263071 GOLGA6L3A6NEY3 463 aa18.07■□□□□ 0.48
SCARF1-201ENST00000263071 PDE3BQ13370 1112 aa18.07■□□□□ 0.48
SCARF1-201ENST00000263071 NUTM2DQ5VT03 806 aaPredicted RBP18.07■□□□□ 0.48
SCARF1-201ENST00000263071 DISP1Q96F81 1524 aa18.06■□□□□ 0.48
SCARF1-201ENST00000263071 SAFB2Q14151 953 aaKnown RBP eCLIP18.06■□□□□ 0.48
SCARF1-201ENST00000263071 PANK1Q8TE04 598 aa18.06■□□□□ 0.48
SCARF1-201ENST00000263071 PER1O15534 1290 aaPredicted RBP18.05■□□□□ 0.48
SCARF1-201ENST00000263071 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.05■□□□□ 0.48
SCARF1-201ENST00000263071 TRIM44Q96DX7 344 aaPredicted RBP18.05■□□□□ 0.48
SCARF1-201ENST00000263071 STAC3Q96MF2 364 aa18.05■□□□□ 0.48
SCARF1-201ENST00000263071 ERCC6Q03468 1493 aa18.05■□□□□ 0.48
SCARF1-201ENST00000263071 MRC2Q9UBG0 1479 aa18.05■□□□□ 0.48
SCARF1-201ENST00000263071 PBRM1Q86U86 1689 aa18.04■□□□□ 0.48
SCARF1-201ENST00000263071 PPP2R1AP30153 589 aa18.04■□□□□ 0.48
SCARF1-201ENST00000263071 SPINK5Q9NQ38 1064 aaPredicted RBP18.04■□□□□ 0.48
SCARF1-201ENST00000263071 ADAMTS12P58397 1594 aa18.04■□□□□ 0.48
SCARF1-201ENST00000263071 GCC2Q8IWJ2 1684 aa18.04■□□□□ 0.48
SCARF1-201ENST00000263071 IPO4Q8TEX9 1081 aaKnown RBP18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms