RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 RAPGEF3O95398 923 aa23.6■■□□□ 1.37
FOXA1-201ENST00000250448 L3MBTL2Q969R5 705 aa23.6■■□□□ 1.37
FOXA1-201ENST00000250448 ATP7AQ04656 1500 aa23.6■■□□□ 1.37
FOXA1-201ENST00000250448 FAM135AQ9P2D6 1515 aa23.58■■□□□ 1.36
FOXA1-201ENST00000250448 RTEL1-TNFRSF6BF6WH68 1400 aa23.57■■□□□ 1.36
FOXA1-201ENST00000250448 INO80Q9ULG1 1556 aaPredicted RBP23.56■■□□□ 1.36
FOXA1-201ENST00000250448 KDM5DQ9BY66 1539 aa23.56■■□□□ 1.36
FOXA1-201ENST00000250448 RPRD2Q5VT52 1461 aaKnown RBP23.55■■□□□ 1.36
FOXA1-201ENST00000250448 ERBINQ96RT1 1412 aa23.55■■□□□ 1.36
FOXA1-201ENST00000250448 ZNF518AQ6AHZ1 1483 aa23.53■■□□□ 1.36
FOXA1-201ENST00000250448 UNC13BO14795 1591 aa23.53■■□□□ 1.36
FOXA1-201ENST00000250448 TSPOAP1O95153 1857 aa23.53■■□□□ 1.36
FOXA1-201ENST00000250448 KIF3BO15066 747 aa23.52■■□□□ 1.36
FOXA1-201ENST00000250448 POGZQ7Z3K3 1410 aa23.52■■□□□ 1.36
FOXA1-201ENST00000250448 RBM19Q9Y4C8 960 aaKnown RBP23.52■■□□□ 1.36
FOXA1-201ENST00000250448 MAP3K4Q9Y6R4 1608 aa23.52■■□□□ 1.36
FOXA1-201ENST00000250448 DIP2BQ9P265 1576 aa23.51■■□□□ 1.35
FOXA1-201ENST00000250448 KIDINS220Q9ULH0 1771 aa23.51■■□□□ 1.35
FOXA1-201ENST00000250448 CFAP74Q9C0B2 1584 aa23.51■■□□□ 1.35
FOXA1-201ENST00000250448 NEO1Q92859 1461 aa23.48■■□□□ 1.35
FOXA1-201ENST00000250448 TEX14Q8IWB6 1497 aa23.46■■□□□ 1.35
FOXA1-201ENST00000250448 GLI2P10070 1586 aa23.46■■□□□ 1.35
FOXA1-201ENST00000250448 DHX29Q7Z478 1369 aaKnown RBP23.45■■□□□ 1.34
FOXA1-201ENST00000250448 NBPF8Q3BBV2 869 aa23.45■■□□□ 1.34
FOXA1-201ENST00000250448 ZNF326Q5BKZ1 582 aaKnown RBP23.45■■□□□ 1.34
FOXA1-201ENST00000250448 IQGAP3Q86VI3 1631 aa23.45■■□□□ 1.34
FOXA1-201ENST00000250448 KDM5CP41229 1560 aa23.43■■□□□ 1.34
FOXA1-201ENST00000250448 MAGI2Q86UL8 1455 aa23.43■■□□□ 1.34
FOXA1-201ENST00000250448 HNRNPUQ00839 825 aaKnown RBP eCLIP23.42■■□□□ 1.34
FOXA1-201ENST00000250448 HECW2Q9P2P5 1572 aa23.4■■□□□ 1.34
FOXA1-201ENST00000250448 PLA2R1Q13018 1463 aa23.4■■□□□ 1.34
FOXA1-201ENST00000250448 A2MP01023 1474 aa23.39■■□□□ 1.34
FOXA1-201ENST00000250448 WASHC2AQ641Q2 1341 aa23.39■■□□□ 1.33
FOXA1-201ENST00000250448 HSPA5P11021 654 aaKnown RBP23.38■■□□□ 1.33
FOXA1-201ENST00000250448 KDM2AQ9Y2K7 1162 aa23.38■■□□□ 1.33
FOXA1-201ENST00000250448 MLH3Q9UHC1 1453 aa23.38■■□□□ 1.33
FOXA1-201ENST00000250448 RGL3Q3MIN7 710 aa23.38■■□□□ 1.33
FOXA1-201ENST00000250448 ABCA6Q8N139 1617 aa23.38■■□□□ 1.33
FOXA1-201ENST00000250448 GGT6Q6P531 493 aa23.38■■□□□ 1.33
FOXA1-201ENST00000250448 PPRC1Q5VV67 1664 aaKnown RBP23.36■■□□□ 1.33
FOXA1-201ENST00000250448 CCDC144AA2RUR9 1427 aa23.36■■□□□ 1.33
FOXA1-201ENST00000250448 YEATS2Q9ULM3 1422 aa23.36■■□□□ 1.33
FOXA1-201ENST00000250448 RICTORQ6R327 1708 aa23.35■■□□□ 1.33
FOXA1-201ENST00000250448 FRMPD1Q5SYB0 1578 aa23.35■■□□□ 1.33
FOXA1-201ENST00000250448 DEPDC5O75140 1603 aa23.34■■□□□ 1.33
FOXA1-201ENST00000250448 KIF13AQ9H1H9 1805 aa23.34■■□□□ 1.33
FOXA1-201ENST00000250448 CNTLNQ9NXG0 1405 aa23.34■■□□□ 1.33
FOXA1-201ENST00000250448 KANK1Q14678 1352 aa23.33■■□□□ 1.33
FOXA1-201ENST00000250448 MROH1Q8NDA8 1641 aa23.33■■□□□ 1.32
FOXA1-201ENST00000250448 DCAF11Q8TEB1 546 aa23.33■■□□□ 1.32
FOXA1-201ENST00000250448 E9PCH4 1651 aa23.32■■□□□ 1.32
FOXA1-201ENST00000250448 EIF4G2P78344 907 aaKnown RBP eCLIP23.31■■□□□ 1.32
FOXA1-201ENST00000250448 EIF2AK4Q9P2K8 1649 aaKnown RBP23.3■■□□□ 1.32
FOXA1-201ENST00000250448 DIP2CQ9Y2E4 1556 aa23.29■■□□□ 1.32
FOXA1-201ENST00000250448 IRX6P78412 446 aaPredicted RBP23.27■■□□□ 1.32
FOXA1-201ENST00000250448 PRDM15P57071 1507 aaPredicted RBP23.27■■□□□ 1.32
FOXA1-201ENST00000250448 VWDEQ8N2E2 1590 aa23.26■■□□□ 1.31
FOXA1-201ENST00000250448 ATP10AO60312 1499 aa23.25■■□□□ 1.31
FOXA1-201ENST00000250448 COL17A1Q9UMD9 1497 aaPredicted RBP23.24■■□□□ 1.31
FOXA1-201ENST00000250448 CEP152O94986 1710 aa23.24■■□□□ 1.31
FOXA1-201ENST00000250448 TET3O43151 1660 aa23.24■■□□□ 1.31
FOXA1-201ENST00000250448 ERICH6BQ5W0A0 696 aa23.23■■□□□ 1.31
FOXA1-201ENST00000250448 CFAP65Q6ZU64 1925 aaKnown RBP23.23■■□□□ 1.31
FOXA1-201ENST00000250448 CCDC7Q96M83 1385 aa23.22■■□□□ 1.31
FOXA1-201ENST00000250448 MSH5O43196 834 aa23.22■■□□□ 1.31
FOXA1-201ENST00000250448 FANCIQ9NVI1 1328 aa23.21■■□□□ 1.31
FOXA1-201ENST00000250448 WASHC2CQ9Y4E1 1318 aa23.21■■□□□ 1.31
FOXA1-201ENST00000250448 RNF17Q9BXT8 1623 aaKnown RBP23.2■■□□□ 1.3
FOXA1-201ENST00000250448 CCDC184Q52MB2 194 aa23.2■■□□□ 1.3
FOXA1-201ENST00000250448 UGGT1Q9NYU2 1555 aa23.19■■□□□ 1.3
FOXA1-201ENST00000250448 SPHKAPQ2M3C7 1700 aa23.18■■□□□ 1.3
FOXA1-201ENST00000250448 PRKRIP1Q9H875 184 aaPredicted RBP23.17■■□□□ 1.3
FOXA1-201ENST00000250448 POLR1AO95602 1720 aaPredicted RBP23.17■■□□□ 1.3
FOXA1-201ENST00000250448 C11orf95C9JLR9 678 aaPredicted RBP23.16■■□□□ 1.3
FOXA1-201ENST00000250448 EFCAB6Q5THR3 1501 aa23.16■■□□□ 1.3
FOXA1-201ENST00000250448 TRHP20396 242 aaPredicted RBP23.16■■□□□ 1.3
FOXA1-201ENST00000250448 PPP4R2Q9NY27 417 aa23.16■■□□□ 1.3
FOXA1-201ENST00000250448 PTPRTO14522 1441 aa23.16■■□□□ 1.3
FOXA1-201ENST00000250448 CLTCL1P53675 1640 aa23.16■■□□□ 1.3
FOXA1-201ENST00000250448 TRPM2O94759 1503 aa23.15■■□□□ 1.3
FOXA1-201ENST00000250448 ZMYM4Q5VZL5 1548 aa23.15■■□□□ 1.3
FOXA1-201ENST00000250448 UHRF1BP1Q6BDS2 1440 aa23.13■■□□□ 1.29
FOXA1-201ENST00000250448 NPATQ14207 1427 aa23.13■■□□□ 1.29
FOXA1-201ENST00000250448 MLECQ14165 292 aa23.12■■□□□ 1.29
FOXA1-201ENST00000250448 ZBED9Q6R2W3 1325 aa23.12■■□□□ 1.29
FOXA1-201ENST00000250448 MRS2Q9HD23 443 aa23.12■■□□□ 1.29
FOXA1-201ENST00000250448 ABCC3O15438 1527 aa23.11■■□□□ 1.29
FOXA1-201ENST00000250448 CARD11Q9BXL7 1154 aa23.11■■□□□ 1.29
FOXA1-201ENST00000250448 SPATA31E1Q6ZUB1 1445 aa23.11■■□□□ 1.29
FOXA1-201ENST00000250448 NBPF1Q3BBV0 1214 aa23.11■■□□□ 1.29
FOXA1-201ENST00000250448 FAM9BQ8IZU0 186 aa23.11■■□□□ 1.29
FOXA1-201ENST00000250448 CHGAP10645 457 aaKnown RBP23.1■■□□□ 1.29
FOXA1-201ENST00000250448 LMTK2Q8IWU2 1503 aa23.1■■□□□ 1.29
FOXA1-201ENST00000250448 USP47Q96K76 1375 aa23.09■■□□□ 1.29
FOXA1-201ENST00000250448 PRAG1Q86YV5 1406 aa23.09■■□□□ 1.29
FOXA1-201ENST00000250448 BCORL1Q5H9F3 1711 aa23.09■■□□□ 1.29
FOXA1-201ENST00000250448 RALGAPBQ86X10 1494 aa23.08■■□□□ 1.28
FOXA1-201ENST00000250448 ROCK2O75116 1388 aaKnown RBP23.07■■□□□ 1.28
FOXA1-201ENST00000250448 SIGLEC1Q9BZZ2 1709 aa23.07■■□□□ 1.28
FOXA1-201ENST00000250448 KIF7Q2M1P5 1343 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms