RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 ST20-MTHFSA0A0A6YYL1 179 aa13.85□□□□□ -0.19
COPB1-201ENST00000249923 KDM2AQ9Y2K7 1162 aa13.85□□□□□ -0.19
COPB1-201ENST00000249923 CARD11Q9BXL7 1154 aa13.84□□□□□ -0.19
COPB1-201ENST00000249923 TSPY4P0CV99 314 aa13.84□□□□□ -0.19
COPB1-201ENST00000249923 TSPY10P0CW01 314 aa13.84□□□□□ -0.19
COPB1-201ENST00000249923 DCAF11Q8TEB1 546 aa13.84□□□□□ -0.19
COPB1-201ENST00000249923 MAST1Q9Y2H9 1570 aa13.83□□□□□ -0.2
COPB1-201ENST00000249923 PRAG1Q86YV5 1406 aa13.83□□□□□ -0.2
COPB1-201ENST00000249923 PNISRQ8TF01 805 aaKnown RBP13.83□□□□□ -0.2
COPB1-201ENST00000249923 ARID4BQ4LE39 1312 aaPredicted RBP13.82□□□□□ -0.2
COPB1-201ENST00000249923 B4GALNT3Q6L9W6 998 aa13.82□□□□□ -0.2
COPB1-201ENST00000249923 SMG6Q86US8 1419 aaKnown RBP13.82□□□□□ -0.2
COPB1-201ENST00000249923 MYO5CQ9NQX4 1742 aa13.82□□□□□ -0.2
COPB1-201ENST00000249923 A2MP01023 1474 aa13.81□□□□□ -0.2
COPB1-201ENST00000249923 ARHGAP5Q13017 1502 aa13.8□□□□□ -0.2
COPB1-201ENST00000249923 PLXNC1O60486 1568 aa13.8□□□□□ -0.2
COPB1-201ENST00000249923 NBPF1Q3BBV0 1214 aa13.8□□□□□ -0.2
COPB1-201ENST00000249923 PPP4R2Q9NY27 417 aa13.8□□□□□ -0.2
COPB1-201ENST00000249923 IQGAP3Q86VI3 1631 aa13.8□□□□□ -0.2
COPB1-201ENST00000249923 PLEKHH2Q8IVE3 1493 aa13.8□□□□□ -0.2
COPB1-201ENST00000249923 LRPPRCP42704 1394 aaKnown RBP13.79□□□□□ -0.2
COPB1-201ENST00000249923 RNF123Q5XPI4 1314 aa13.79□□□□□ -0.2
COPB1-201ENST00000249923 ABCC2Q92887 1545 aa13.78□□□□□ -0.2
COPB1-201ENST00000249923 ROCK2O75116 1388 aaKnown RBP13.78□□□□□ -0.2
COPB1-201ENST00000249923 ERICH6BQ5W0A0 696 aa13.78□□□□□ -0.2
COPB1-201ENST00000249923 MAGI2Q86UL8 1455 aa13.78□□□□□ -0.2
COPB1-201ENST00000249923 CCDC144AA2RUR9 1427 aa13.76□□□□□ -0.21
COPB1-201ENST00000249923 PRDM15P57071 1507 aaPredicted RBP13.76□□□□□ -0.21
COPB1-201ENST00000249923 GPRASP1Q5JY77 1395 aa13.76□□□□□ -0.21
COPB1-201ENST00000249923 DISP3Q9P2K9 1392 aa13.75□□□□□ -0.21
COPB1-201ENST00000249923 RGL3Q3MIN7 710 aa13.74□□□□□ -0.21
COPB1-201ENST00000249923 NUDCQ9Y266 331 aa13.74□□□□□ -0.21
COPB1-201ENST00000249923 PER1O15534 1290 aaPredicted RBP13.74□□□□□ -0.21
COPB1-201ENST00000249923 ZCCHC11Q5TAX3 1644 aaKnown RBP13.74□□□□□ -0.21
COPB1-201ENST00000249923 TESK2Q96S53 571 aa13.74□□□□□ -0.21
COPB1-201ENST00000249923 LAMC1P11047 1609 aa13.73□□□□□ -0.21
COPB1-201ENST00000249923 COL17A1Q9UMD9 1497 aaPredicted RBP13.73□□□□□ -0.21
COPB1-201ENST00000249923 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.73□□□□□ -0.218e-7■■■□□ 16.6
COPB1-201ENST00000249923 PARD3Q8TEW0 1356 aa13.72□□□□□ -0.21
COPB1-201ENST00000249923 FANCIQ9NVI1 1328 aa13.72□□□□□ -0.21
COPB1-201ENST00000249923 RNF17Q9BXT8 1623 aaKnown RBP13.72□□□□□ -0.21
COPB1-201ENST00000249923 ATP10AO60312 1499 aa13.71□□□□□ -0.21
COPB1-201ENST00000249923 MYBBP1AQ9BQG0 1328 aaKnown RBP13.71□□□□□ -0.21
COPB1-201ENST00000249923 TRAPPC8Q9Y2L5 1435 aa13.71□□□□□ -0.21
COPB1-201ENST00000249923 ABCC1P33527 1531 aa13.71□□□□□ -0.21
COPB1-201ENST00000249923 RSPH4AQ5TD94 716 aa13.71□□□□□ -0.22
COPB1-201ENST00000249923 BRD4O60885 1362 aaPredicted RBP13.71□□□□□ -0.22
COPB1-201ENST00000249923 DUOX2Q9NRD8 1548 aa13.71□□□□□ -0.22
COPB1-201ENST00000249923 TMC1Q8TDI8 760 aa13.7□□□□□ -0.22
COPB1-201ENST00000249923 NPM2Q86SE8 214 aaKnown RBP13.69□□□□□ -0.22
COPB1-201ENST00000249923 CLASP1Q7Z460 1538 aa13.69□□□□□ -0.22
COPB1-201ENST00000249923 PLCH2O75038 1416 aa13.69□□□□□ -0.22
COPB1-201ENST00000249923 RTN4Q9NQC3 1192 aaKnown RBP13.69□□□□□ -0.22
COPB1-201ENST00000249923 ERBINQ96RT1 1412 aa13.68□□□□□ -0.22
COPB1-201ENST00000249923 MADDQ8WXG6 1647 aa13.67□□□□□ -0.22
COPB1-201ENST00000249923 RALBP1Q15311 655 aa13.66□□□□□ -0.22
COPB1-201ENST00000249923 KTN1Q86UP2 1357 aaKnown RBP13.66□□□□□ -0.22
COPB1-201ENST00000249923 EIF2AK4Q9P2K8 1649 aaKnown RBP13.65□□□□□ -0.22
COPB1-201ENST00000249923 ZFYVE16Q7Z3T8 1539 aa13.65□□□□□ -0.22
COPB1-201ENST00000249923 IQGAP1P46940 1657 aa13.64□□□□□ -0.23
COPB1-201ENST00000249923 SALL2Q9Y467 1007 aaPredicted RBP13.63□□□□□ -0.23
COPB1-201ENST00000249923 UHRF1BP1LA0JNW5 1464 aa13.63□□□□□ -0.23
COPB1-201ENST00000249923 DEPDC5O75140 1603 aa13.63□□□□□ -0.23
COPB1-201ENST00000249923 CLTCL1P53675 1640 aa13.63□□□□□ -0.23
COPB1-201ENST00000249923 WDR7Q9Y4E6 1490 aa13.63□□□□□ -0.23
COPB1-201ENST00000249923 NLRP13Q86W25 1043 aa13.62□□□□□ -0.23
COPB1-201ENST00000249923 SPHKAPQ2M3C7 1700 aa13.62□□□□□ -0.23
COPB1-201ENST00000249923 RTL5Q5HYW3 569 aaPredicted RBP13.62□□□□□ -0.23
COPB1-201ENST00000249923 CEP152O94986 1710 aa13.61□□□□□ -0.23
COPB1-201ENST00000249923 CC2D1BQ5T0F9 858 aaKnown RBP13.61□□□□□ -0.23
COPB1-201ENST00000249923 AFAP1Q8N556 730 aa13.61□□□□□ -0.23
COPB1-201ENST00000249923 CDCA7LQ96GN5 454 aa13.61□□□□□ -0.23
COPB1-201ENST00000249923 PANK3Q9H999 370 aa13.61□□□□□ -0.23
COPB1-201ENST00000249923 TRPM2O94759 1503 aa13.61□□□□□ -0.23
COPB1-201ENST00000249923 BLMP54132 1417 aaPredicted RBP13.6□□□□□ -0.23
COPB1-201ENST00000249923 MYOM1P52179 1685 aa13.6□□□□□ -0.23
COPB1-201ENST00000249923 MROH1Q8NDA8 1641 aa13.58□□□□□ -0.24
COPB1-201ENST00000249923 PTPRTO14522 1441 aa13.58□□□□□ -0.24
COPB1-201ENST00000249923 RRP1P56182 461 aaKnown RBP13.58□□□□□ -0.24
COPB1-201ENST00000249923 VWDEQ8N2E2 1590 aa13.58□□□□□ -0.24
COPB1-201ENST00000249923 INO80Q9ULG1 1556 aaPredicted RBP13.58□□□□□ -0.24
COPB1-201ENST00000249923 DEKP35659 375 aaKnown RBP13.58□□□□□ -0.24
COPB1-201ENST00000249923 UGGT1Q9NYU2 1555 aa13.57□□□□□ -0.24
COPB1-201ENST00000249923 EFCAB2Q5VUJ9 269 aa13.57□□□□□ -0.24
COPB1-201ENST00000249923 CCDC136Q96JN2 1154 aa13.57□□□□□ -0.24
COPB1-201ENST00000249923 ABCA9Q8IUA7 1624 aa13.57□□□□□ -0.24
COPB1-201ENST00000249923 EXOC6Q8TAG9 804 aa13.56□□□□□ -0.24
COPB1-201ENST00000249923 ARAP3Q8WWN8 1544 aa13.55□□□□□ -0.24
COPB1-201ENST00000249923 TET3O43151 1660 aa13.55□□□□□ -0.24
COPB1-201ENST00000249923 RTEL1-TNFRSF6BF6WH68 1400 aa13.54□□□□□ -0.24
COPB1-201ENST00000249923 RCAN3Q9UKA8 241 aa13.54□□□□□ -0.24
COPB1-201ENST00000249923 ATP7AQ04656 1500 aa13.53□□□□□ -0.24
COPB1-201ENST00000249923 ZMYM4Q5VZL5 1548 aa13.53□□□□□ -0.24
COPB1-201ENST00000249923 SPAG9O60271 1321 aaKnown RBP13.53□□□□□ -0.24
COPB1-201ENST00000249923 WASHC2CQ9Y4E1 1318 aa13.53□□□□□ -0.24
COPB1-201ENST00000249923 PAK3O75914 559 aaPredicted RBP13.53□□□□□ -0.24
COPB1-201ENST00000249923 TMF1P82094 1093 aa13.52□□□□□ -0.24
COPB1-201ENST00000249923 AMER1Q5JTC6 1135 aaPredicted RBP13.52□□□□□ -0.25
COPB1-201ENST00000249923 SYNMO15061 1565 aa13.52□□□□□ -0.25
COPB1-201ENST00000249923 PLIN1O60240 522 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms