RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	SNC1	P31109	117 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	NDC1	P32500	655 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	PDR3	P33200	976 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	COS111	P38308	924 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	YHR202W	P38887	602 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	TES1	P41903	349 aa	Known RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	YSA1	Q01976	231 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	MTD1	Q02046	320 aa	Known RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	RPL6A	Q02326	176 aa	Known RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	GIP3	Q03016	1276 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	PIR3	Q03180	325 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	PRM15	Q03262	622 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	YMR210W	Q03649	449 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	BUR2	Q05949	395 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	PDR8	Q06149	701 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	HBT1	Q07653	1046 aa	Known RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	YLR012C	Q07927	99 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	FRE3	Q08905	711 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	PKH2	Q12236	1081 aa	Known RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	RRP42	Q12277	265 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	YOR012W	Q12351	137 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	SNU23	Q12368	194 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	LSO2	Q3E772	92 aa	Known RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	YEL009C-A	A0A023PZF2	135 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	QCR7	P00128	127 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	SIR2	P06700	562 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	RAD52	P06778	471 aa	Known RBP	4.59	□□□□□ -1.67
CDC28	YBR160W	SCH9	P11792	824 aa	Known RBP	4.59	□□□□□ -1.67
CDC28	YBR160W	BAR1	P12630	587 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	MRPL8	P22353	238 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	RER1	P25560	188 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	HOM6	P31116	359 aa	Known RBP	4.59	□□□□□ -1.67
CDC28	YBR160W	RNP1	P32385	249 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	GSH1	P32477	678 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	PET309	P32522	965 aa	Predicted RBP	4.59	□□□□□ -1.67
CDC28	YBR160W	PET127	P32606	800 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	SUR1	P33300	382 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	MSN2	P33748	704 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	PHO11	P35842	467 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	YPT52	P36018	234 aa	Known RBP	4.59	□□□□□ -1.67
CDC28	YBR160W	SDS22	P36047	338 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	SNU114	P36048	1008 aa	Known RBP	4.59	□□□□□ -1.67
CDC28	YBR160W	APT2	P36973	181 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	APL3	P38065	1025 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	FAT1	P38225	669 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	PHO12	P38693	467 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
CDC28	YBR160W	RRF1	P38771	230 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	GEP4	P38812	185 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	GDI1	P39958	451 aa	Known RBP	4.59	□□□□□ -1.67
CDC28	YBR160W	YGR201C	P42936	225 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	SIP4	P46954	829 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	ERV29	P53337	310 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	YNL143C	P53908	130 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	MET31	Q03081	177 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	EMI2	Q04409	500 aa	Known RBP	4.59	□□□□□ -1.67
CDC28	YBR160W	YLR173W	Q06247	608 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	DXO1	Q06349	442 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	ARV1	Q06541	321 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	GPN3	Q06543	272 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	MRPL35	Q06678	367 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	YOR283W	Q12040	230 aa	Known RBP	4.59	□□□□□ -1.67
CDC28	YBR160W	AEP3	Q12089	606 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	PSF1	Q12488	208 aa		4.59	□□□□□ -1.67
CDC28	YBR160W	PHO5	P00635	467 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	CDC21	P06785	304 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	YAR066W	P0CX18	203 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	YHR214W	P0CX19	203 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	NHP6B	P11633	99 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	RPS1B	P23248	255 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	PRE7	P23724	241 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	RBK1	P25332	333 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	PGS1	P25578	521 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	MRPL9	P31334	269 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	KRE6	P32486	720 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	CAT2	P32796	670 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	CSE2	P33308	149 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	SPO23	P33757	523 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	OAR1	P35731	278 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	ALY1	P36117	915 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	APE3	P37302	537 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	HMT1	P38074	348 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	AIM10	P39965	576 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	RTT105	P40063	208 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	LSM5	P40089	93 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	SWM2	P40342	146 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	PFS2	P42841	465 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	PRP24	P49960	444 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	MUP1	P50276	574 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	IMO32	P53219	342 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	BUD17	P53727	317 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	TRM112	P53738	135 aa	Predicted RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	CAF40	P53829	373 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	SNZ1	Q03148	297 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	MSS11	Q03825	758 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	ARX1	Q03862	593 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	CTK1	Q03957	528 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	RRP45	Q05636	305 aa	Known RBP	4.58	□□□□□ -1.68
CDC28	YBR160W	NMD4	Q12129	218 aa		4.58	□□□□□ -1.68
CDC28	YBR160W	BSC1	Q12140	328 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 62.5 ms