RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeastyeast

Gene CDC28, Length 897 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC28YBR160W MTC1P47018 478 aaKnown RBP13.05□□□□□ -0.32
CDC28YBR160W DRS1P32892 752 aaKnown RBP12.65□□□□□ -0.38
CDC28YBR160W FAP1P53971 965 aa11.03□□□□□ -0.64
CDC28YBR160W DIP2Q12220 943 aaPredicted RBP10.91□□□□□ -0.66
CDC28YBR160W BFR2Q06631 534 aaKnown RBP10.76□□□□□ -0.69
CDC28YBR160W AVT3P36062 692 aa10.73□□□□□ -0.69
CDC28YBR160W PRI1P10363 409 aa10.71□□□□□ -0.69
CDC28YBR160W ISW2Q08773 1120 aa10.64□□□□□ -0.71
CDC28YBR160W AAD16Q02895 342 aa10.54□□□□□ -0.72
CDC28YBR160W RPG1P38249 964 aaKnown RBP10.52□□□□□ -0.73
CDC28YBR160W RSE1Q04693 1361 aaKnown RBP10.39□□□□□ -0.75
CDC28YBR160W PRY3P47033 881 aa10.37□□□□□ -0.75
CDC28YBR160W TSR3Q12094 313 aaKnown RBP10.11□□□□□ -0.79
CDC28YBR160W RPL17AP05740 184 aaKnown RBP10.04□□□□□ -0.8
CDC28YBR160W RPL17BP46990 184 aaKnown RBP10.04□□□□□ -0.8
CDC28YBR160W YCK3P39962 524 aa9.96□□□□□ -0.82
CDC28YBR160W TFA1P36100 482 aa9.92□□□□□ -0.82
CDC28YBR160W REB1P21538 810 aa9.9□□□□□ -0.82
CDC28YBR160W HAA1Q12753 694 aaKnown RBP9.79□□□□□ -0.84
CDC28YBR160W SPT21P35209 758 aa9.74□□□□□ -0.85
CDC28YBR160W MRPL32P25348 183 aa9.68□□□□□ -0.86
CDC28YBR160W RIM101P33400 625 aa9.48□□□□□ -0.89
CDC28YBR160W YKR023WP36119 530 aaKnown RBP9.48□□□□□ -0.89
CDC28YBR160W CDC27P38042 758 aa9.37□□□□□ -0.91
CDC28YBR160W TFC8Q12308 588 aa9.27□□□□□ -0.93
CDC28YBR160W HOP09932 586 aa9.22□□□□□ -0.93
CDC28YBR160W OXP1P28273 1286 aa9.18□□□□□ -0.94
CDC28YBR160W DCD1P06773 312 aa9.17□□□□□ -0.94
CDC28YBR160W YGL015CP33199 130 aa9.15□□□□□ -0.94
CDC28YBR160W UBP10P53874 792 aaPredicted RBP9.03□□□□□ -0.96
CDC28YBR160W MAP2P38174 421 aaKnown RBP8.99□□□□□ -0.97
CDC28YBR160W BCH2P36122 765 aa8.97□□□□□ -0.97
CDC28YBR160W YIL055CP40523 627 aaKnown RBP8.94□□□□□ -0.98
CDC28YBR160W PTP3P40048 928 aa8.92□□□□□ -0.98
CDC28YBR160W YAH1Q12184 172 aaKnown RBP8.89□□□□□ -0.99
CDC28YBR160W SCY1P53009 804 aa8.88□□□□□ -0.99
CDC28YBR160W RSM7P47150 247 aa8.87□□□□□ -0.99
CDC28YBR160W SSP1P38871 571 aa8.84□□□□□ -0.99
CDC28YBR160W YLR271WQ06152 274 aa8.84□□□□□ -0.99
CDC28YBR160W EPS1P40557 701 aa8.79□□□□□ -1
CDC28YBR160W AI2P03876 854 aa8.75□□□□□ -1.01
CDC28YBR160W SLX5P32828 619 aaKnown RBP8.74□□□□□ -1.01
CDC28YBR160W BDF1P35817 686 aa8.74□□□□□ -1.01
CDC28YBR160W ARP8Q12386 881 aaKnown RBP RIP-Chip data8.7□□□□□ -1.02not detected
CDC28YBR160W BBC1P47068 1157 aa8.68□□□□□ -1.02
CDC28YBR160W PSD2P53037 1138 aaKnown RBP8.68□□□□□ -1.02
CDC28YBR160W TIF4632P39936 914 aaKnown RBP8.59□□□□□ -1.03
CDC28YBR160W TGL3P40308 642 aa8.59□□□□□ -1.03
CDC28YBR160W MGA2P40578 1113 aa8.57□□□□□ -1.04
CDC28YBR160W CST9Q06032 482 aa8.55□□□□□ -1.04
CDC28YBR160W RQC2Q12532 1038 aaKnown RBP8.52□□□□□ -1.05
CDC28YBR160W MRM1P25270 412 aa8.45□□□□□ -1.06
CDC28YBR160W NSR1P27476 414 aaKnown RBP RIP-Chip data8.44□□□□□ -1.06not detected
CDC28YBR160W MST1P07236 462 aa8.34□□□□□ -1.07
CDC28YBR160W RCR1P38212 213 aa8.31□□□□□ -1.08
CDC28YBR160W RTG3P38165 486 aa8.3□□□□□ -1.08
CDC28YBR160W VPS29P38759 282 aa8.3□□□□□ -1.08
CDC28YBR160W YAP5P40574 245 aa8.3□□□□□ -1.08
CDC28YBR160W YOR238WQ08634 303 aa8.28□□□□□ -1.08
CDC28YBR160W YMR1P47147 688 aaKnown RBP RIP-Chip data8.22□□□□□ -1.09not detected
CDC28YBR160W RAM2P29703 316 aa8.21□□□□□ -1.1
CDC28YBR160W BUD31P25337 157 aaPredicted RBP8.2□□□□□ -1.1
CDC28YBR160W STS1P38637 319 aa8.19□□□□□ -1.1
CDC28YBR160W DBP1P24784 617 aaKnown RBP8.16□□□□□ -1.1
CDC28YBR160W PIB1Q06651 286 aa8.14□□□□□ -1.11
CDC28YBR160W YFR006WP43590 535 aa8.13□□□□□ -1.11
CDC28YBR160W MAK11P20484 414 aaKnown RBP8.11□□□□□ -1.11
CDC28YBR160W UBP9P39967 754 aa8.1□□□□□ -1.11
CDC28YBR160W VMA1P17255 1071 aaKnown RBP8.07□□□□□ -1.12
CDC28YBR160W GTT3P39996 337 aa8.05□□□□□ -1.12
CDC28YBR160W YBL029C-AQ3E756 94 aa8.05□□□□□ -1.12
CDC28YBR160W SAM3Q08986 587 aa8.03□□□□□ -1.12
CDC28YBR160W VNX1P42839 908 aa8.02□□□□□ -1.13
CDC28YBR160W EDS1P38073 919 aa7.99□□□□□ -1.13
CDC28YBR160W WSC3Q12215 556 aa7.99□□□□□ -1.13
CDC28YBR160W COQ8P27697 501 aa7.98□□□□□ -1.13
CDC28YBR160W SPA2P23201 1466 aaKnown RBP7.98□□□□□ -1.13
CDC28YBR160W SGS1P35187 1447 aa7.97□□□□□ -1.13
CDC28YBR160W YOL036WQ08206 761 aa7.97□□□□□ -1.13
CDC28YBR160W DMA1P38823 416 aa7.95□□□□□ -1.14
CDC28YBR160W MSB4Q12317 492 aa7.95□□□□□ -1.14
CDC28YBR160W MIF2P35201 549 aa7.93□□□□□ -1.14
CDC28YBR160W TIF11P38912 153 aaKnown RBP7.92□□□□□ -1.14
CDC28YBR160W NOP53Q12080 455 aaKnown RBP7.92□□□□□ -1.14
CDC28YBR160W PTC3P34221 468 aaKnown RBP7.91□□□□□ -1.14
CDC28YBR160W SPP1Q03012 353 aa7.91□□□□□ -1.14
CDC28YBR160W SET4P42948 560 aa7.9□□□□□ -1.14
CDC28YBR160W SET1P38827 1080 aaKnown RBP7.89□□□□□ -1.15
CDC28YBR160W GYP5Q12344 894 aa7.88□□□□□ -1.15
CDC28YBR160W ABP1P15891 592 aaKnown RBP7.86□□□□□ -1.15
CDC28YBR160W IOC2Q12072 812 aa7.86□□□□□ -1.15
CDC28YBR160W EAP1P36041 632 aaKnown RBP7.85□□□□□ -1.15
CDC28YBR160W ULI1P43604 169 aa7.84□□□□□ -1.15
CDC28YBR160W GRE2Q12068 342 aaKnown RBP7.84□□□□□ -1.15
CDC28YBR160W TRP5P00931 707 aaKnown RBP7.82□□□□□ -1.16
CDC28YBR160W INO80P53115 1489 aa7.81□□□□□ -1.16
CDC28YBR160W SSN2P38931 1420 aa7.81□□□□□ -1.16
CDC28YBR160W GUT1P32190 709 aa7.81□□□□□ -1.16
CDC28YBR160W YPR148CQ06523 435 aa7.81□□□□□ -1.16
CDC28YBR160W DCW1P36091 449 aa7.79□□□□□ -1.16
Retrieved 100 of 5,963 RNA–protein pairs in 89.7 ms