RNA–Protein interactions for RNA: YBR160W

CDC28, Transcript of Cyclin-dependent kinase (CDK) catalytic subunit, yeast

Gene CDC28, Length 897 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC28	YBR160W	PZF1	P39933	429 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	VRG4	P40107	337 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	NDE1	P40215	560 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	PAN6	P40459	309 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	ERG10	P41338	398 aa	Known RBP	4.63	□□□□□ -1.67
CDC28	YBR160W	IME4	P41833	600 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	PFA3	P42836	336 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	YFR018C	P43599	363 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	AIM22	P47051	409 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	STE24	P47154	453 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	LSM7	P53905	115 aa	Known RBP	4.63	□□□□□ -1.67
CDC28	YBR160W	YPL068C	Q02749	293 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	NGL2	Q03264	515 aa	Known RBP	4.63	□□□□□ -1.67
CDC28	YBR160W	RCR2	Q03446	210 aa	Known RBP	4.63	□□□□□ -1.67
CDC28	YBR160W	NSE5	Q03718	556 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	RRG7	Q08774	242 aa	Predicted RBP	4.63	□□□□□ -1.67
CDC28	YBR160W	FEX2	Q08991	375 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	SFM1	Q12314	213 aa		4.63	□□□□□ -1.67
CDC28	YBR160W	RPS21B	Q3E754	87 aa	Known RBP	4.63	□□□□□ -1.67
CDC28	YBR160W	YPR096C	O13587	100 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	IPP1	P00817	287 aa	Known RBP	4.62	□□□□□ -1.67
CDC28	YBR160W	GCN4	P03069	281 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	SPS2	P08459	502 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	MRP2	P10663	115 aa	Predicted RBP	4.62	□□□□□ -1.67
CDC28	YBR160W	RPL3	P14126	387 aa	Known RBP	4.62	□□□□□ -1.67
CDC28	YBR160W	KGD2	P19262	463 aa	Predicted RBP	4.62	□□□□□ -1.67
CDC28	YBR160W	PEX1	P24004	1043 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	DCC1	P25559	380 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	SEC17	P32602	292 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	TIP20	P33891	701 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	RSM22	P36056	628 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	APM3	P38153	483 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	YHL026C	P38740	315 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	RPP1	P38786	293 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	BIG1	P38813	335 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	MDM31	P38880	579 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	HIS6	P40545	261 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	SKP2	P42843	763 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	ATG18	P43601	500 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	ECM27	P47144	725 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	AAD10	P47182	288 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	GOR1	P53839	350 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	HXT11	P54862	567 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	TDA1	Q03533	586 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	VHS1	Q03785	461 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	YDR249C	Q03787	373 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	YMR087W	Q04299	284 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	ASM4	Q05166	528 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	RAD34	Q06665	692 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	YOL073C	Q08232	322 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	ATP14	Q12349	124 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	SKM1	Q12469	655 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	MHT1	Q12525	324 aa		4.62	□□□□□ -1.67
CDC28	YBR160W	YLR415C	O13578	112 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	FUM1	P08417	488 aa	Known RBP	4.61	□□□□□ -1.67
CDC28	YBR160W	PHO80	P20052	293 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	CNB1	P25296	175 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	SLM5	P25345	492 aa	Known RBP	4.61	□□□□□ -1.67
CDC28	YBR160W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
CDC28	YBR160W	SSO1	P32867	290 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	CBT1	P36038	271 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC28	YBR160W	YBR063C	P38083	404 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	ECM31	P38122	312 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	URA8	P38627	578 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC28	YBR160W	STP2	P38704	541 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	RCY1	P39531	840 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	PTI1	P39927	425 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC28	YBR160W	SSU1	P41930	458 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	GAT1	P43574	510 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	RMD8	P43620	662 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	YJL043W	P47053	257 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	POP6	P53218	158 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	HOL1	P53389	586 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	RRN9	P53437	365 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	IPI3	P53877	555 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	FDC1	Q03034	503 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	SCS7	Q03529	384 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	TRM82	Q03774	444 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	YMR130W	Q04223	302 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	MFB1	Q04922	465 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	ECM22	Q05958	814 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC28	YBR160W	SPO77	Q06134	477 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	DCS1	Q06151	350 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	VPS74	Q06385	345 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	TPO3	Q06451	622 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	IRC10	Q08118	586 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	SYC1	Q08553	188 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC28	YBR160W	CLP1	Q08685	445 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC28	YBR160W	DIN7	Q12086	430 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	RPN5	Q12250	445 aa	Known RBP	4.61	□□□□□ -1.67
CDC28	YBR160W	MRX4	Q12467	430 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	MTR10	Q99189	972 aa		4.61	□□□□□ -1.67
CDC28	YBR160W	YBR085C-A	O43137	85 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	HAP2	P06774	265 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	STE3	P06783	470 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	RPC40	P07703	335 aa	Known RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	YCK1	P23291	538 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	BUD5	P25300	642 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC28	YBR160W	YCR102C	P25608	368 aa		4.6	□□□□□ -1.67
CDC28	YBR160W	ERG9	P29704	444 aa		4.6	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 18 ms