RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHR3	YDL212W	RPN5	Q12250	445 aa	Known RBP	3.18	□□□□□ -1.9
SHR3	YDL212W	PCL9	Q12477	304 aa		3.18	□□□□□ -1.9
SHR3	YDL212W	ECT1	P33412	323 aa		3.17	□□□□□ -1.9
SHR3	YDL212W	YHR177W	P38867	453 aa		3.17	□□□□□ -1.9
SHR3	YDL212W	SEH1	P53011	349 aa	Known RBP	3.17	□□□□□ -1.9
SHR3	YDL212W	RSC1	P53236	928 aa		3.17	□□□□□ -1.9
SHR3	YDL212W	RTT102	P53330	157 aa		3.17	□□□□□ -1.9
SHR3	YDL212W	CIK1	Q01649	594 aa		3.17	□□□□□ -1.9
SHR3	YDL212W	YDR541C	Q03049	344 aa		3.17	□□□□□ -1.9
SHR3	YDL212W	YOR376W	Q08900	122 aa		3.17	□□□□□ -1.9
SHR3	YDL212W	FOL3	Q12676	427 aa	Predicted RBP	3.17	□□□□□ -1.9
SHR3	YDL212W	RPL1A	P0CX43	217 aa	Known RBP	3.16	□□□□□ -1.9
SHR3	YDL212W	RPL1B	P0CX44	217 aa	Known RBP	3.16	□□□□□ -1.9
SHR3	YDL212W	RNA1	P11745	407 aa	Known RBP	3.16	□□□□□ -1.9
SHR3	YDL212W	DPH2	P32461	534 aa		3.16	□□□□□ -1.9
SHR3	YDL212W	MNL1	P38888	796 aa		3.16	□□□□□ -1.9
SHR3	YDL212W	LCB2	P40970	561 aa		3.16	□□□□□ -1.9
SHR3	YDL212W	CIN2	P46670	268 aa		3.16	□□□□□ -1.9
SHR3	YDL212W	CTK3	P46963	296 aa	Predicted RBP	3.16	□□□□□ -1.9
SHR3	YDL212W	YML6	P51998	286 aa		3.16	□□□□□ -1.9
SHR3	YDL212W	VAC7	P53950	1165 aa		3.16	□□□□□ -1.9
SHR3	YDL212W	REX2	P54964	269 aa	Known RBP	3.16	□□□□□ -1.9
SHR3	YDL212W	LDS2	Q08218	356 aa		3.16	□□□□□ -1.9
SHR3	YDL212W	GIT1	P25346	518 aa		3.15	□□□□□ -1.91
SHR3	YDL212W	SPP381	P38282	291 aa	Predicted RBP	3.15	□□□□□ -1.91
SHR3	YDL212W	MLH1	P38920	769 aa		3.15	□□□□□ -1.91
SHR3	YDL212W	ATP22	P50273	684 aa	Predicted RBP	3.15	□□□□□ -1.91
SHR3	YDL212W	YIP5	P53108	310 aa		3.15	□□□□□ -1.91
SHR3	YDL212W	FLC3	P53121	802 aa		3.15	□□□□□ -1.91
SHR3	YDL212W	VHT1	P53241	593 aa		3.15	□□□□□ -1.91
SHR3	YDL212W	PRP38	Q00723	242 aa	Predicted RBP	3.15	□□□□□ -1.91
SHR3	YDL212W	GAT3	Q07928	141 aa		3.15	□□□□□ -1.91
SHR3	YDL212W	MSP1	P28737	362 aa		3.14	□□□□□ -1.91
SHR3	YDL212W	ANP1	P32629	500 aa		3.14	□□□□□ -1.91
SHR3	YDL212W	PFF1	P38244	976 aa		3.14	□□□□□ -1.91
SHR3	YDL212W	LSM12	P38828	187 aa	Known RBP	3.14	□□□□□ -1.91
SHR3	YDL212W	SEC27	P41811	889 aa	Known RBP	3.14	□□□□□ -1.91
SHR3	YDL212W	TRF5	P48561	642 aa	Known RBP	3.14	□□□□□ -1.91
SHR3	YDL212W	KTR6	P54070	446 aa		3.14	□□□□□ -1.91
SHR3	YDL212W	MSC3	Q05812	728 aa		3.14	□□□□□ -1.91
SHR3	YDL212W	MEX67	Q99257	599 aa	Known RBP	3.14	□□□□□ -1.91
SHR3	YDL212W	RPS18A	P0CX55	146 aa	Known RBP	3.13	□□□□□ -1.91
SHR3	YDL212W	RPS18B	P0CX56	146 aa	Predicted RBP	3.13	□□□□□ -1.91
SHR3	YDL212W	ZUO1	P32527	433 aa	Known RBP	3.13	□□□□□ -1.91
SHR3	YDL212W	PDC2	P32896	925 aa		3.13	□□□□□ -1.91
SHR3	YDL212W	PXA2	P34230	853 aa		3.13	□□□□□ -1.91
SHR3	YDL212W	WSC4	P38739	605 aa		3.13	□□□□□ -1.91
SHR3	YDL212W	CHL4	P38907	458 aa		3.13	□□□□□ -1.91
SHR3	YDL212W	AIP1	P46680	615 aa	Known RBP	3.13	□□□□□ -1.91
SHR3	YDL212W	YLR177W	Q06251	628 aa		3.13	□□□□□ -1.91
SHR3	YDL212W	MCH1	Q07376	486 aa		3.13	□□□□□ -1.91
SHR3	YDL212W	RAX2	Q12465	1220 aa		3.13	□□□□□ -1.91
SHR3	YDL212W	STE7	P06784	515 aa		3.12	□□□□□ -1.91
SHR3	YDL212W	RPL21A	Q02753	160 aa	Known RBP	3.12	□□□□□ -1.91
SHR3	YDL212W	ERO1	Q03103	563 aa		3.12	□□□□□ -1.91
SHR3	YDL212W	AAD15	Q08361	143 aa		3.12	□□□□□ -1.91
SHR3	YDL212W	TIR4	Q12218	487 aa	Predicted RBP	3.12	□□□□□ -1.91
SHR3	YDL212W	RPL21B	Q12672	160 aa	Known RBP	3.12	□□□□□ -1.91
SHR3	YDL212W	MAS2	P11914	482 aa		3.11	□□□□□ -1.91
SHR3	YDL212W	PUT4	P15380	627 aa		3.11	□□□□□ -1.91
SHR3	YDL212W	TOA1	P32773	286 aa		3.11	□□□□□ -1.91
SHR3	YDL212W	SOL2	P37262	315 aa		3.11	□□□□□ -1.91
SHR3	YDL212W	DTR1	P38125	572 aa		3.11	□□□□□ -1.91
SHR3	YDL212W	YDR115W	Q04598	105 aa		3.11	□□□□□ -1.91
SHR3	YDL212W	IPK1	Q06667	281 aa		3.11	□□□□□ -1.91
SHR3	YDL212W	SFM1	Q12314	213 aa		3.11	□□□□□ -1.91
SHR3	YDL212W	TPI1	P00942	248 aa	Known RBP	3.1	□□□□□ -1.91
SHR3	YDL212W	BMT2	P38278	337 aa		3.1	□□□□□ -1.91
SHR3	YDL212W	SLX1	P38324	304 aa		3.1	□□□□□ -1.91
SHR3	YDL212W	LRP1	P38801	184 aa	Known RBP	3.1	□□□□□ -1.91
SHR3	YDL212W	ASN2	P49090	572 aa	Known RBP	3.1	□□□□□ -1.91
SHR3	YDL212W	RRP7	P25368	297 aa	Predicted RBP	3.09	□□□□□ -1.91
SHR3	YDL212W	FHL1	P39521	936 aa		3.09	□□□□□ -1.91
SHR3	YDL212W	SEC9	P40357	651 aa		3.09	□□□□□ -1.91
SHR3	YDL212W	YFL012W	P43580	148 aa		3.09	□□□□□ -1.91
SHR3	YDL212W	ATP16	Q12165	160 aa		3.09	□□□□□ -1.91
SHR3	YDL212W	PAR32	Q12515	295 aa	Known RBP	3.09	□□□□□ -1.91
SHR3	YDL212W	KAP104	P38217	918 aa	Known RBP	3.08	□□□□□ -1.92
SHR3	YDL212W	WSS1	P38838	269 aa		3.08	□□□□□ -1.92
SHR3	YDL212W	YER184C	P39961	794 aa		3.08	□□□□□ -1.92
SHR3	YDL212W	YJL055W	P47044	245 aa		3.08	□□□□□ -1.92
SHR3	YDL212W	HST1	P53685	503 aa		3.08	□□□□□ -1.92
SHR3	YDL212W	YOL085C	Q99345	113 aa		3.08	□□□□□ -1.92
SHR3	YDL212W	UNG1	P12887	359 aa		3.07	□□□□□ -1.92
SHR3	YDL212W	MNE1	P24720	663 aa		3.07	□□□□□ -1.92
SHR3	YDL212W	PEX5	P35056	612 aa		3.07	□□□□□ -1.92
SHR3	YDL212W	SMP1	P38128	452 aa		3.07	□□□□□ -1.92
SHR3	YDL212W	PEX22	P39718	180 aa		3.07	□□□□□ -1.92
SHR3	YDL212W	YPR078C	Q06813	372 aa		3.07	□□□□□ -1.92
SHR3	YDL212W	YDL109C	Q12103	647 aa		3.07	□□□□□ -1.92
SHR3	YDL212W	HMS1	Q12398	434 aa		3.07	□□□□□ -1.92
SHR3	YDL212W	PRM7	Q12459	698 aa		3.07	□□□□□ -1.92
SHR3	YDL212W	HEM4	P06174	275 aa		3.06	□□□□□ -1.92
SHR3	YDL212W	RPL16A	P26784	199 aa	Known RBP	3.06	□□□□□ -1.92
SHR3	YDL212W	BIO3	P50277	480 aa		3.06	□□□□□ -1.92
SHR3	YDL212W	VPS9	P54787	451 aa		3.06	□□□□□ -1.92
SHR3	YDL212W	FSH2	Q05015	223 aa		3.06	□□□□□ -1.92
SHR3	YDL212W	YLH47	Q06493	454 aa		3.06	□□□□□ -1.92
SHR3	YDL212W	SRO7	Q12038	1033 aa		3.06	□□□□□ -1.92
SHR3	YDL212W	YDR061W	Q12298	539 aa		3.06	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 39.4 ms