Protein–RNA interactions for Protein: P53950

VAC7, Vacuolar segregation protein 7, yeastyeast

Predictions only

Length 1,165 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VAC7P53950 YML009W-BYML009W-B 477 nt20.52■□□□□ 0.88
VAC7P53950 NSR1YGR159C 1245 nt20.33■□□□□ 0.85
VAC7P53950 NOP1YDL014W 984 nt19.96■□□□□ 0.79
VAC7P53950 YKL036CYKL036C 393 nt18.58■□□□□ 0.56
VAC7P53950 MDJ1YFL016C 1536 nt17.96■□□□□ 0.47
VAC7P53950 Q0297Q0297 156 nt17.6■□□□□ 0.41
VAC7P53950 SRX1YKL086W 384 nt17.51■□□□□ 0.39
VAC7P53950 YJL027CYJL027C 417 nt17.33■□□□□ 0.36
VAC7P53950 SCS3YGL126W 1143 nt17.01■□□□□ 0.31
VAC7P53950 YCR051WYCR051W 669 nt16.55■□□□□ 0.24
VAC7P53950 YOL085CYOL085C 342 nt16.12■□□□□ 0.17
VAC7P53950 DBP2YNL112W 1641 nt16.02■□□□□ 0.16
VAC7P53950 PKP1YIL042C 1185 nt15.82■□□□□ 0.12
VAC7P53950 TRN1tP(UGG)A 72 nt15.81■□□□□ 0.12
VAC7P53950 SUF9tP(UGG)F 72 nt15.81■□□□□ 0.12
VAC7P53950 SUF8tP(UGG)H 72 nt15.81■□□□□ 0.12
VAC7P53950 tP(UGG)LtP(UGG)L 72 nt15.81■□□□□ 0.12
VAC7P53950 SUF7tP(UGG)M 72 nt15.81■□□□□ 0.12
VAC7P53950 tP(UGG)N1tP(UGG)N1 72 nt15.81■□□□□ 0.12
VAC7P53950 tP(UGG)N2tP(UGG)N2 72 nt15.81■□□□□ 0.12
VAC7P53950 tP(UGG)O1tP(UGG)O1 72 nt15.81■□□□□ 0.12
VAC7P53950 SUF11tP(UGG)O2 72 nt15.81■□□□□ 0.12
VAC7P53950 RPP1BYDL130W 321 nt15.77■□□□□ 0.12
VAC7P53950 CCC1YLR220W 969 nt15.54■□□□□ 0.08
VAC7P53950 YBR190WYBR190W 312 nt15.27■□□□□ 0.04
VAC7P53950 ATS1YAL020C 1002 nt15.23■□□□□ 0.03
VAC7P53950 SCJ1YMR214W 1134 nt15.21■□□□□ 0.03
VAC7P53950 PET122YER153C 765 nt15.08■□□□□ 0
VAC7P53950 tP(UGG)O3tP(UGG)O3 72 nt14.96□□□□□ -0.01
VAC7P53950 RVS167YDR388W 1449 nt14.92□□□□□ -0.02
VAC7P53950 SCR1SCR1 522 nt14.85□□□□□ -0.03
VAC7P53950 RTC3YHR087W 336 nt14.84□□□□□ -0.03
VAC7P53950 RRN5YLR141W 1092 nt14.62□□□□□ -0.07
VAC7P53950 SHR5YOL110W 714 nt14.5□□□□□ -0.09
VAC7P53950 YDJ1YNL064C 1230 nt14.48□□□□□ -0.09
VAC7P53950 SSA3YBL075C 1950 nt14.45□□□□□ -0.1
VAC7P53950 YER088W-BYER088W-B 147 nt14.36□□□□□ -0.11
VAC7P53950 RSB1YOR049C 1065 nt14.31□□□□□ -0.12
VAC7P53950 PST2YDR032C 597 nt14.12□□□□□ -0.15
VAC7P53950 GAR1YHR089C 618 nt14.08□□□□□ -0.16
VAC7P53950 URN1YPR152C 1398 nt14.02□□□□□ -0.17
VAC7P53950 DEP1YAL013W 1218 nt14.02□□□□□ -0.17
VAC7P53950 PUT4YOR348C 1884 nt13.85□□□□□ -0.19
VAC7P53950 YNL208WYNL208W 600 nt13.82□□□□□ -0.2
VAC7P53950 OPI9YLR338W 858 nt13.81□□□□□ -0.2
VAC7P53950 RPN10YHR200W 807 nt13.77□□□□□ -0.21
VAC7P53950 SAH1YER043C 1350 nt13.68□□□□□ -0.22
VAC7P53950 TIR1YER011W 765 nt13.64□□□□□ -0.23
VAC7P53950 ARE1YCR048W 1833 nt13.63□□□□□ -0.23
VAC7P53950 YKL097CYKL097C 411 nt13.55□□□□□ -0.24
VAC7P53950 SHU1YHL006C 453 nt13.51□□□□□ -0.25
VAC7P53950 SSA1YAL005C 1929 nt13.5□□□□□ -0.25
VAC7P53950 YHR049C-AYHR049C-A 297 nt13.39□□□□□ -0.27
VAC7P53950 SRB2YHR041C 633 nt13.37□□□□□ -0.27
VAC7P53950 PUN1YLR414C 792 nt13.37□□□□□ -0.27
VAC7P53950 YJR018WYJR018W 363 nt13.36□□□□□ -0.27
VAC7P53950 POA1YBR022W 534 nt13.34□□□□□ -0.27
VAC7P53950 YJR120WYJR120W 351 nt13.32□□□□□ -0.28
VAC7P53950 YAL037C-BYAL037C-B 975 nt13.23□□□□□ -0.29
VAC7P53950 PTC2YER089C 1395 nt13.19□□□□□ -0.3
VAC7P53950 YOR139CYOR139C 393 nt13.08□□□□□ -0.32
VAC7P53950 RPP2BYDR382W 333 nt13.07□□□□□ -0.32
VAC7P53950 WWM1YFL010C 636 nt13.07□□□□□ -0.32
VAC7P53950 BSC6YOL137W 1494 nt13.06□□□□□ -0.32
VAC7P53950 BUD23YCR047C 828 nt13.03□□□□□ -0.32
VAC7P53950 HOM6YJR139C 1080 nt13.02□□□□□ -0.33
VAC7P53950 NAB2YGL122C 1578 nt13.02□□□□□ -0.33
VAC7P53950 YGR021WYGR021W 873 nt13□□□□□ -0.33
VAC7P53950 MNP1YGL068W 585 nt12.97□□□□□ -0.33
VAC7P53950 FIS1YIL065C 468 nt12.92□□□□□ -0.34
VAC7P53950 BDH2YAL061W 1254 nt12.91□□□□□ -0.34
VAC7P53950 DAL1YIR027C 1383 nt12.87□□□□□ -0.35
VAC7P53950 INM2YDR287W 879 nt12.85□□□□□ -0.35
VAC7P53950 YFL021C-AYFL021C-A 855 nt12.85□□□□□ -0.35
VAC7P53950 NPL3YDR432W 1245 nt12.82□□□□□ -0.36
VAC7P53950 RKM5YLR137W 1104 nt12.81□□□□□ -0.36
VAC7P53950 PHO4YFR034C 939 nt12.77□□□□□ -0.37
VAC7P53950 YBL100CYBL100C 315 nt12.77□□□□□ -0.37
VAC7P53950 YOL037CYOL037C 354 nt12.77□□□□□ -0.37
VAC7P53950 LSM3YLR438C-A 270 nt12.75□□□□□ -0.37
VAC7P53950 FPR4YLR449W 1179 nt12.75□□□□□ -0.37
VAC7P53950 FUN26YAL022C 1554 nt12.64□□□□□ -0.39
VAC7P53950 TRM9YML014W 840 nt12.58□□□□□ -0.4
VAC7P53950 tM(CAU)CtM(CAU)C 72 nt12.54□□□□□ -0.4
VAC7P53950 IMT4tM(CAU)E 72 nt12.54□□□□□ -0.4
VAC7P53950 IMT3tM(CAU)J3 72 nt12.54□□□□□ -0.4
VAC7P53950 IMT1tM(CAU)O1 72 nt12.54□□□□□ -0.4
VAC7P53950 IMT2tM(CAU)P 72 nt12.54□□□□□ -0.4
VAC7P53950 CCT6YDR188W 1641 nt12.54□□□□□ -0.4
VAC7P53950 SPT5YML010W 3192 nt12.52□□□□□ -0.41
VAC7P53950 YPS1YLR120C 1710 nt12.5□□□□□ -0.41
VAC7P53950 YLR281CYLR281C 468 nt12.49□□□□□ -0.41
VAC7P53950 SSA4YER103W 1929 nt12.47□□□□□ -0.41
VAC7P53950 YDR095CYDR095C 411 nt12.45□□□□□ -0.42
VAC7P53950 WHI5YOR083W 888 nt12.41□□□□□ -0.42
VAC7P53950 PUS2YGL063W 1113 nt12.36□□□□□ -0.43
VAC7P53950 ALF1YNL148C 765 nt12.35□□□□□ -0.43
VAC7P53950 SUF2tP(AGG)C 72 nt12.33□□□□□ -0.44
VAC7P53950 SUF10tP(AGG)N 72 nt12.33□□□□□ -0.44
VAC7P53950 YLR154C-GYLR154C-G 150 nt12.3□□□□□ -0.44
Retrieved 100 of 7,029 protein–RNA pairs in 52.5 ms