RNA–Protein interactions for RNA: YDR257C

RKM4, Transcript of Ribosomal lysine methyltransferase, yeast

Gene RKM4, Length 1,485 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKM4	YDR257C	NFI1	Q12216	726 aa		4.64	□□□□□ -1.67
RKM4	YDR257C	NCA2	Q12374	616 aa		4.64	□□□□□ -1.67
RKM4	YDR257C	HHF1	P02309	103 aa	Known RBP	4.63	□□□□□ -1.67
RKM4	YDR257C	ATP1	P07251	545 aa	Known RBP	4.63	□□□□□ -1.67
RKM4	YDR257C	PHO84	P25297	587 aa	Known RBP	4.63	□□□□□ -1.67
RKM4	YDR257C	YBL059W	P34224	193 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	LAS1	P36146	502 aa	Predicted RBP	4.63	□□□□□ -1.67
RKM4	YDR257C	CHK1	P38147	527 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	CCT4	P39078	528 aa	Known RBP	4.63	□□□□□ -1.67
RKM4	YDR257C	CAJ1	P39101	391 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	JLP2	P40206	208 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	TOS3	P43637	560 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	YGR016W	P53209	190 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	TOF1	P53840	1238 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	HER2	Q03557	464 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	CCE1	Q03702	353 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	TSR1	Q07381	788 aa	Known RBP	4.63	□□□□□ -1.67
RKM4	YDR257C	NDE2	Q07500	545 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	RNH203	Q12338	110 aa		4.63	□□□□□ -1.67
RKM4	YDR257C	SPT15	P13393	240 aa	Known RBP	4.62	□□□□□ -1.67
RKM4	YDR257C	SIM1	P40472	476 aa		4.62	□□□□□ -1.67
RKM4	YDR257C	RTT102	P53330	157 aa		4.62	□□□□□ -1.67
RKM4	YDR257C	URC2	Q04411	772 aa		4.62	□□□□□ -1.67
RKM4	YDR257C	AAD15	Q08361	143 aa		4.62	□□□□□ -1.67
RKM4	YDR257C	ERV2	Q12284	196 aa		4.62	□□□□□ -1.67
RKM4	YDR257C	RPL12A	P0CX53	165 aa	Known RBP	4.62	□□□□□ -1.67
RKM4	YDR257C	RPL12B	P0CX54	165 aa		4.62	□□□□□ -1.67
RKM4	YDR257C	DEG1	P31115	442 aa	Known RBP	4.62	□□□□□ -1.67
RKM4	YDR257C	PAD1	P33751	242 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
RKM4	YDR257C	NDT80	P38830	627 aa		4.62	□□□□□ -1.67
RKM4	YDR257C	ECM7	Q06200	448 aa		4.62	□□□□□ -1.67
RKM4	YDR257C	OPI3	P05375	206 aa		4.61	□□□□□ -1.67
RKM4	YDR257C	ARF1	P11076	181 aa	Known RBP	4.61	□□□□□ -1.67
RKM4	YDR257C	CBS2	P14905	389 aa		4.61	□□□□□ -1.67
RKM4	YDR257C	DAP2	P18962	818 aa		4.61	□□□□□ -1.67
RKM4	YDR257C	SKT5	P34226	696 aa		4.61	□□□□□ -1.67
RKM4	YDR257C	YKL097C	P34245	136 aa		4.61	□□□□□ -1.67
RKM4	YDR257C	DOA1	P36037	715 aa		4.61	□□□□□ -1.67
RKM4	YDR257C	ATM1	P40416	690 aa		4.61	□□□□□ -1.67
RKM4	YDR257C	STE24	P47154	453 aa		4.61	□□□□□ -1.67
RKM4	YDR257C	ELP3	Q02908	557 aa	Known RBP	4.61	□□□□□ -1.67
RKM4	YDR257C	CUE5	Q08412	411 aa	Known RBP	4.61	□□□□□ -1.67
RKM4	YDR257C	TRP1	P00912	224 aa		4.6	□□□□□ -1.67
RKM4	YDR257C	ADH5	P38113	351 aa	Known RBP	4.6	□□□□□ -1.67
RKM4	YDR257C	PTH1	P38876	190 aa	Known RBP	4.6	□□□□□ -1.67
RKM4	YDR257C	YOR387C	Q08910	206 aa		4.6	□□□□□ -1.67
RKM4	YDR257C	EXG1	P23776	448 aa	Known RBP	4.59	□□□□□ -1.67
RKM4	YDR257C	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
RKM4	YDR257C	ARO2	P28777	376 aa	Known RBP	4.59	□□□□□ -1.67
RKM4	YDR257C	FAA1	P30624	700 aa	Known RBP	4.59	□□□□□ -1.67
RKM4	YDR257C	YBR139W	P38109	508 aa		4.59	□□□□□ -1.67
RKM4	YDR257C	YBL028C	P38202	106 aa		4.59	□□□□□ -1.67
RKM4	YDR257C	SPP381	P38282	291 aa	Predicted RBP	4.59	□□□□□ -1.67
RKM4	YDR257C	COX14	P39103	70 aa		4.59	□□□□□ -1.67
RKM4	YDR257C	ATP22	P50273	684 aa	Predicted RBP	4.59	□□□□□ -1.67
RKM4	YDR257C	PMT5	P52867	743 aa		4.59	□□□□□ -1.67
RKM4	YDR257C	YGR117C	P53270	476 aa		4.59	□□□□□ -1.67
RKM4	YDR257C	CWC25	P53854	179 aa	Known RBP	4.59	□□□□□ -1.67
RKM4	YDR257C	POM152	P39685	1337 aa		4.58	□□□□□ -1.68
RKM4	YDR257C	TPK3	P05986	398 aa		4.58	□□□□□ -1.68
RKM4	YDR257C	CAP2	P13517	287 aa		4.58	□□□□□ -1.68
RKM4	YDR257C	UBA1	P22515	1024 aa	Known RBP	4.58	□□□□□ -1.68
RKM4	YDR257C	YEF1	P32622	495 aa		4.58	□□□□□ -1.68
RKM4	YDR257C	MTM1	P53320	366 aa		4.58	□□□□□ -1.68
RKM4	YDR257C	SPR6	Q01684	191 aa		4.58	□□□□□ -1.68
RKM4	YDR257C	YRM1	Q12340	786 aa		4.58	□□□□□ -1.68
RKM4	YDR257C	CYC3	P06182	269 aa		4.57	□□□□□ -1.68
RKM4	YDR257C	TPM1	P17536	199 aa	Known RBP	4.57	□□□□□ -1.68
RKM4	YDR257C	MNS1	P32906	549 aa		4.57	□□□□□ -1.68
RKM4	YDR257C	SIF2	P38262	535 aa		4.57	□□□□□ -1.68
RKM4	YDR257C	YIL029C	P40538	142 aa		4.57	□□□□□ -1.68
RKM4	YDR257C	REE1	P40893	198 aa		4.57	□□□□□ -1.68
RKM4	YDR257C	RRP46	P53256	223 aa	Predicted RBP	4.57	□□□□□ -1.68
RKM4	YDR257C	YDR286C	Q05530	114 aa		4.57	□□□□□ -1.68
RKM4	YDR257C	DBP9	Q06218	594 aa	Known RBP	4.57	□□□□□ -1.68
RKM4	YDR257C	MDM36	Q06820	579 aa		4.57	□□□□□ -1.68
RKM4	YDR257C	NOP6	Q07623	225 aa	Known RBP	4.57	□□□□□ -1.68
RKM4	YDR257C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
RKM4	YDR257C	SUP35	P05453	685 aa	Known RBP	4.56	□□□□□ -1.68
RKM4	YDR257C	PHA2	P32452	334 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	KAR9	P32526	644 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	SPT10	P35208	640 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	AVT5	P38176	459 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	YPI1	P43587	155 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	YGL242C	P53066	181 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	BTN2	P53286	410 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	NUP116	Q02630	1113 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	ASA1	Q06822	443 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	TLG2	Q08144	397 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	LDS2	Q08218	356 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	PGC1	Q08959	321 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	YOP1	Q12402	180 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	NBL1	Q3E7Y6	73 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	SCH9	P11792	824 aa	Known RBP	4.56	□□□□□ -1.68
RKM4	YDR257C	DAL2	P25335	343 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	NAM9	P27929	486 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	POP5	P28005	173 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	ANP1	P32629	500 aa		4.56	□□□□□ -1.68
RKM4	YDR257C	RFS1	P38234	210 aa	Known RBP	4.56	□□□□□ -1.68
RKM4	YDR257C	SBE22	P38814	852 aa		4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 18.8 ms