RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C THP1Q08231 455 aa1.43□□□□□ -2.18
VPS54YDR027C YOR365CQ08844 703 aa1.43□□□□□ -2.18
VPS54YDR027C PAR32Q12515 295 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C SEC16P48415 2195 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C MDH1P17505 334 aaKnown RBP RIP-Chip data1.42□□□□□ -2.18not detected
VPS54YDR027C ATP11P32453 318 aa1.42□□□□□ -2.18
VPS54YDR027C TFB1P32776 642 aa1.42□□□□□ -2.18
VPS54YDR027C OSH3P38713 996 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C YHR210CP38893 341 aa1.42□□□□□ -2.18
VPS54YDR027C MBB1P39534 108 aa1.42□□□□□ -2.18
VPS54YDR027C YGR149WP48236 432 aa1.42□□□□□ -2.18
VPS54YDR027C HEF3P53978 1044 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C SOV1Q04748 898 aa1.42□□□□□ -2.18
VPS54YDR027C VTA1Q06263 330 aa1.42□□□□□ -2.18
VPS54YDR027C YDL009CQ12210 107 aa1.42□□□□□ -2.18
VPS54YDR027C HHF1P02309 103 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C SUI2P20459 304 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C OPI1P21957 404 aa1.42□□□□□ -2.18
VPS54YDR027C IDH2P28241 369 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C HSP104P31539 908 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C SPR1P32603 445 aa1.42□□□□□ -2.18
VPS54YDR027C YME2P32843 850 aa1.42□□□□□ -2.18
VPS54YDR027C SHP1P34223 423 aa1.42□□□□□ -2.18
VPS54YDR027C SKI2P35207 1287 aaKnown RBP RIP-Chip data1.42□□□□□ -2.18not detected
VPS54YDR027C YKL023WP36103 277 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C BNA4P38169 460 aa1.42□□□□□ -2.18
VPS54YDR027C TCM62P38228 572 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C RFS1P38234 210 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C EFM4P40516 257 aa1.42□□□□□ -2.18
VPS54YDR027C ALK1P43633 760 aaKnown RBP1.42□□□□□ -2.18
VPS54YDR027C YGR266WP53326 701 aa1.42□□□□□ -2.18
VPS54YDR027C CIK1Q01649 594 aa1.42□□□□□ -2.18
VPS54YDR027C KAP120Q02932 1032 aa1.42□□□□□ -2.18
VPS54YDR027C SYO1Q07395 620 aa1.42□□□□□ -2.18
VPS54YDR027C MEC1P38111 2368 aa1.42□□□□□ -2.18
VPS54YDR027C UTP10P42945 1769 aaKnown RBP1.41□□□□□ -2.18
VPS54YDR027C MES1P00958 751 aaKnown RBP1.41□□□□□ -2.18
VPS54YDR027C HSP82P02829 709 aaKnown RBP1.41□□□□□ -2.18
VPS54YDR027C SUP35P05453 685 aaKnown RBP1.41□□□□□ -2.18
VPS54YDR027C CPR1P14832 162 aaKnown RBP1.41□□□□□ -2.18
VPS54YDR027C MNE1P24720 663 aa1.41□□□□□ -2.18
VPS54YDR027C AFG1P32317 509 aa1.41□□□□□ -2.18
VPS54YDR027C HCS1P34243 683 aa1.41□□□□□ -2.18
VPS54YDR027C SLM4P38247 162 aa1.41□□□□□ -2.18
VPS54YDR027C JEM1P40358 645 aa1.41□□□□□ -2.18
VPS54YDR027C CAK1P43568 368 aaPredicted RBP1.41□□□□□ -2.18
VPS54YDR027C YJL055WP47044 245 aa1.41□□□□□ -2.18
VPS54YDR027C OGG1P53397 376 aaPredicted RBP1.41□□□□□ -2.18
VPS54YDR027C YLR152CP54072 576 aa1.41□□□□□ -2.18
VPS54YDR027C SHR3Q02774 210 aa1.41□□□□□ -2.18
VPS54YDR027C OAZ1Q02803 292 aa1.41□□□□□ -2.18
VPS54YDR027C MMR1Q06324 491 aa1.41□□□□□ -2.18
VPS54YDR027C GPM3Q12326 303 aa1.41□□□□□ -2.18
VPS54YDR027C MDN1Q12019 4910 aaKnown RBP1.41□□□□□ -2.18
VPS54YDR027C URA4P20051 364 aa1.41□□□□□ -2.18
VPS54YDR027C RRP7P25368 297 aaPredicted RBP1.41□□□□□ -2.18
VPS54YDR027C YCR022CP25620 114 aa1.41□□□□□ -2.18
VPS54YDR027C RXT2P38255 430 aa1.41□□□□□ -2.18
VPS54YDR027C SER3P40054 469 aa1.41□□□□□ -2.18
VPS54YDR027C FMS1P50264 508 aa1.41□□□□□ -2.18
VPS54YDR027C OCA1P50946 238 aaPredicted RBP1.41□□□□□ -2.18
VPS54YDR027C ZPR1P53303 486 aaKnown RBP1.41□□□□□ -2.18
VPS54YDR027C RCF1Q03713 159 aa1.41□□□□□ -2.18
VPS54YDR027C RRN11Q04712 507 aa1.41□□□□□ -2.18
VPS54YDR027C RKM5Q12367 367 aa1.41□□□□□ -2.18
VPS54YDR027C SUC2P00724 532 aa1.4□□□□□ -2.19
VPS54YDR027C SPS4P09937 338 aa1.4□□□□□ -2.19
VPS54YDR027C PEP5P12868 1029 aa1.4□□□□□ -2.19
VPS54YDR027C AMD1P15274 810 aaKnown RBP1.4□□□□□ -2.19
VPS54YDR027C ATP10P18496 279 aa1.4□□□□□ -2.19
VPS54YDR027C CLN1P20437 546 aa1.4□□□□□ -2.19
VPS54YDR027C ISY1P21374 235 aaPredicted RBP1.4□□□□□ -2.19
VPS54YDR027C CPR2P23285 205 aa1.4□□□□□ -2.19
VPS54YDR027C RAD14P28519 371 aa1.4□□□□□ -2.19
VPS54YDR027C DUG2P38149 878 aa1.4□□□□□ -2.19
VPS54YDR027C SYG1P40528 902 aa1.4□□□□□ -2.19
VPS54YDR027C YJR154WP47181 346 aa1.4□□□□□ -2.19
VPS54YDR027C ALT2P52892 507 aa1.4□□□□□ -2.19
VPS54YDR027C YGL138CP53122 345 aa1.4□□□□□ -2.19
VPS54YDR027C ACL4Q03771 387 aa1.4□□□□□ -2.19
VPS54YDR027C DON1Q05610 365 aa1.4□□□□□ -2.19
VPS54YDR027C RRP45Q05636 305 aaKnown RBP1.4□□□□□ -2.19
VPS54YDR027C PBA1Q05778 276 aa1.4□□□□□ -2.19
VPS54YDR027C MRPL51Q06090 140 aaPredicted RBP1.4□□□□□ -2.19
VPS54YDR027C RRG7Q08774 242 aaPredicted RBP1.4□□□□□ -2.19
VPS54YDR027C CFT2Q12102 859 aaPredicted RBP1.4□□□□□ -2.19
VPS54YDR027C VAM3Q12241 283 aa1.4□□□□□ -2.19
VPS54YDR027C CTF3Q12748 733 aa1.4□□□□□ -2.19
VPS54YDR027C OSM1P21375 501 aaKnown RBP1.4□□□□□ -2.19
VPS54YDR027C BEM1P29366 551 aa1.4□□□□□ -2.19
VPS54YDR027C MDL1P33310 695 aa1.4□□□□□ -2.19
VPS54YDR027C NIP100P33420 868 aa1.4□□□□□ -2.19
VPS54YDR027C ARA1P38115 344 aa1.4□□□□□ -2.19
VPS54YDR027C SEC28P40509 296 aaKnown RBP1.4□□□□□ -2.19
VPS54YDR027C TFG2P41896 400 aaPredicted RBP1.4□□□□□ -2.19
VPS54YDR027C ECM27P47144 725 aa1.4□□□□□ -2.19
VPS54YDR027C OCA2P53949 197 aa1.4□□□□□ -2.19
VPS54YDR027C ARK1P53974 638 aa1.4□□□□□ -2.19
VPS54YDR027C PHO92Q06390 306 aa1.4□□□□□ -2.19
VPS54YDR027C YLL032CQ07834 825 aaKnown RBP RIP-Chip data1.4□□□□□ -2.19not detected
Retrieved 100 of 5,963 RNA–protein pairs in 47.9 ms