RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C ECM27P47144 725 aa2.04□□□□□ -2.08
VPS35YJL154C DRN1P53255 507 aaKnown RBP2.04□□□□□ -2.08
VPS35YJL154C YGR111WP53265 400 aa2.04□□□□□ -2.08
VPS35YJL154C VPS9P54787 451 aa2.04□□□□□ -2.08
VPS35YJL154C PNG1Q02890 363 aa2.04□□□□□ -2.08
VPS35YJL154C YDR131CQ03899 556 aa2.04□□□□□ -2.08
VPS35YJL154C YDR387CQ04162 555 aa2.04□□□□□ -2.08
VPS35YJL154C YMR087WQ04299 284 aa2.04□□□□□ -2.08
VPS35YJL154C TAP42Q04372 366 aa2.04□□□□□ -2.08
VPS35YJL154C QCR6P00127 147 aa2.04□□□□□ -2.08
VPS35YJL154C HIP1P06775 603 aa2.04□□□□□ -2.08
VPS35YJL154C CLN1P20437 546 aa2.04□□□□□ -2.08
VPS35YJL154C YCR041WP37265 110 aa2.04□□□□□ -2.08
VPS35YJL154C SLM4P38247 162 aa2.04□□□□□ -2.08
VPS35YJL154C RRT2P38332 387 aa2.04□□□□□ -2.08
VPS35YJL154C RTT107P38850 1070 aa2.04□□□□□ -2.08
VPS35YJL154C GDI1P39958 451 aaKnown RBP2.04□□□□□ -2.08
VPS35YJL154C YND1P40009 630 aa2.04□□□□□ -2.08
VPS35YJL154C YAT2P40017 923 aa2.04□□□□□ -2.08
VPS35YJL154C GWT1P47026 490 aa2.04□□□□□ -2.08
VPS35YJL154C GIP3Q03016 1276 aa2.04□□□□□ -2.08
VPS35YJL154C RCF1Q03713 159 aa2.04□□□□□ -2.08
VPS35YJL154C YLL032CQ07834 825 aaKnown RBP RIP-Chip data2.04□□□□□ -2.08not detected
VPS35YJL154C AEP3Q12089 606 aa2.04□□□□□ -2.08
VPS35YJL154C DAP1Q12091 152 aa2.04□□□□□ -2.08
VPS35YJL154C SET6Q12529 373 aa2.04□□□□□ -2.08
VPS35YJL154C YML002WP0CF17 737 aa2.04□□□□□ -2.08
VPS35YJL154C RPL20AP0CX23 172 aaKnown RBP2.04□□□□□ -2.08
VPS35YJL154C RPL20BP0CX24 172 aaPredicted RBP2.04□□□□□ -2.08
VPS35YJL154C OPI1P21957 404 aa2.04□□□□□ -2.08
VPS35YJL154C MNE1P24720 663 aa2.04□□□□□ -2.08
VPS35YJL154C RHB1P25378 209 aa2.04□□□□□ -2.08
VPS35YJL154C URA7P28274 579 aaKnown RBP2.04□□□□□ -2.08
VPS35YJL154C HIR2P32480 875 aa2.04□□□□□ -2.08
VPS35YJL154C LCB2P40970 561 aa2.04□□□□□ -2.08
VPS35YJL154C SNU66Q12420 587 aaPredicted RBP2.04□□□□□ -2.08
VPS35YJL154C NUP188P52593 1655 aaKnown RBP2.03□□□□□ -2.08
VPS35YJL154C RIP1P08067 215 aa2.03□□□□□ -2.08
VPS35YJL154C YCR100CP25606 316 aa2.03□□□□□ -2.08
VPS35YJL154C KRE2P27809 442 aa2.03□□□□□ -2.08
VPS35YJL154C NDI1P32340 513 aa2.03□□□□□ -2.08
VPS35YJL154C YBP1P38315 674 aa2.03□□□□□ -2.08
VPS35YJL154C YAP3P38749 330 aa2.03□□□□□ -2.08
VPS35YJL154C JEM1P40358 645 aa2.03□□□□□ -2.08
VPS35YJL154C YFL067WP43537 175 aa2.03□□□□□ -2.08
VPS35YJL154C RTT101P47050 842 aa2.03□□□□□ -2.08
VPS35YJL154C POP6P53218 158 aa2.03□□□□□ -2.08
VPS35YJL154C ACL4Q03771 387 aa2.03□□□□□ -2.08
VPS35YJL154C HEL2Q05580 639 aaKnown RBP2.03□□□□□ -2.08
VPS35YJL154C YPT1P01123 206 aaKnown RBP2.03□□□□□ -2.09
VPS35YJL154C MDL1P33310 695 aa2.03□□□□□ -2.09
VPS35YJL154C RRP1P35178 278 aaPredicted RBP2.03□□□□□ -2.09
VPS35YJL154C KEL1P38853 1164 aaKnown RBP2.03□□□□□ -2.09
VPS35YJL154C MDM31P38880 579 aa2.03□□□□□ -2.09
VPS35YJL154C BUD27P43573 796 aaKnown RBP RIP-Chip data2.03□□□□□ -2.09not detected
VPS35YJL154C HMS2P47175 358 aa2.03□□□□□ -2.09
VPS35YJL154C SSN8P47821 323 aa2.03□□□□□ -2.09
VPS35YJL154C YPL199CQ08954 240 aa2.03□□□□□ -2.09
VPS35YJL154C KEL3Q08979 651 aaPredicted RBP2.03□□□□□ -2.09
VPS35YJL154C YLL056CQ12177 298 aa2.03□□□□□ -2.09
VPS35YJL154C GPM3Q12326 303 aa2.03□□□□□ -2.09
VPS35YJL154C RKM5Q12367 367 aa2.03□□□□□ -2.09
VPS35YJL154C PAR32Q12515 295 aaKnown RBP2.03□□□□□ -2.09
VPS35YJL154C MTR10Q99189 972 aa2.03□□□□□ -2.09
VPS35YJL154C SNQ2P32568 1501 aaKnown RBP2.02□□□□□ -2.09
VPS35YJL154C PRP21P32524 280 aaPredicted RBP2.02□□□□□ -2.09
VPS35YJL154C ECM25P32525 599 aa2.02□□□□□ -2.09
VPS35YJL154C PMU1P36069 295 aa2.02□□□□□ -2.09
VPS35YJL154C PIM1P36775 1133 aa2.02□□□□□ -2.09
VPS35YJL154C RRN10P38204 145 aa2.02□□□□□ -2.09
VPS35YJL154C TCB2P48231 1178 aa2.02□□□□□ -2.09
VPS35YJL154C YIP1P53039 248 aa2.02□□□□□ -2.09
VPS35YJL154C YGL260WP53056 76 aa2.02□□□□□ -2.09
VPS35YJL154C PIR3Q03180 325 aa2.02□□□□□ -2.09
VPS35YJL154C BNA5Q05979 453 aa2.02□□□□□ -2.09
VPS35YJL154C TY1B-AO13527 1196 aaKnown RBP2.02□□□□□ -2.09
VPS35YJL154C AMD1P15274 810 aaKnown RBP2.02□□□□□ -2.09
VPS35YJL154C SPC110P32380 944 aa2.02□□□□□ -2.09
VPS35YJL154C MTC4P38335 694 aaKnown RBP2.02□□□□□ -2.09
VPS35YJL154C PIB2P53191 635 aa2.02□□□□□ -2.09
VPS35YJL154C CAF40P53829 373 aa2.02□□□□□ -2.09
VPS35YJL154C OCA2P53949 197 aa2.02□□□□□ -2.09
VPS35YJL154C OAZ1Q02803 292 aa2.02□□□□□ -2.09
VPS35YJL154C YLR345WQ06137 509 aa2.02□□□□□ -2.09
VPS35YJL154C MMR1Q06324 491 aa2.02□□□□□ -2.09
VPS35YJL154C PPT2Q12036 173 aa2.02□□□□□ -2.09
VPS35YJL154C NUP157P40064 1391 aaKnown RBP2.01□□□□□ -2.09
VPS35YJL154C ARG4P04076 463 aaPredicted RBP2.01□□□□□ -2.09
VPS35YJL154C SWI3P32591 825 aa2.01□□□□□ -2.09
VPS35YJL154C LTV1P34078 463 aa2.01□□□□□ -2.09
VPS35YJL154C YBR056WP38081 501 aa2.01□□□□□ -2.09
VPS35YJL154C LYS1P38998 373 aaRIP-Chip data2.01□□□□□ -2.09not detected
VPS35YJL154C PCF11P39081 626 aaPredicted RBP2.01□□□□□ -2.09
VPS35YJL154C YJL213WP40896 331 aa2.01□□□□□ -2.09
VPS35YJL154C VMA13P41807 478 aaKnown RBP2.01□□□□□ -2.09
VPS35YJL154C LAM5P43560 674 aa2.01□□□□□ -2.09
VPS35YJL154C YJL132WP47014 750 aa2.01□□□□□ -2.09
VPS35YJL154C YJR011CP47086 261 aaPredicted RBP2.01□□□□□ -2.09
VPS35YJL154C BET5Q03630 159 aa2.01□□□□□ -2.09
VPS35YJL154C PDR5P33302 1511 aaKnown RBP2.01□□□□□ -2.09
Retrieved 100 of 5,963 RNA–protein pairs in 20.2 ms