RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPC40	YPR110C	RFC3	P38629	340 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	FAU1	P40099	211 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	POP1	P41812	875 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	TCB2	P48231	1178 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	SEC5	P89102	971 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	NUP53	Q03790	475 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	VPS74	Q06385	345 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.02	□□□□□ -1.93	not detected
RPC40	YPR110C	SIL1	Q08199	421 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	RKM1	Q08961	583 aa	Predicted RBP	3.02	□□□□□ -1.93
RPC40	YPR110C	CSR2	Q12734	1121 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	MDS3	P53094	1487 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	ECM5	Q03214	1411 aa		3.02	□□□□□ -1.93
RPC40	YPR110C	ESP1	Q03018	1630 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	MES1	P00958	751 aa	Known RBP	3.01	□□□□□ -1.93
RPC40	YPR110C	EXO70	P19658	623 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	BUB3	P26449	341 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	KRE2	P27809	442 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	ERV1	P27882	189 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	SIN4	P32259	974 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	PRP21	P32524	280 aa	Predicted RBP	3.01	□□□□□ -1.93
RPC40	YPR110C	FRE1	P32791	686 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	REC114	P32841	428 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	TRS65	P32893	560 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	NIP100	P33420	868 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	RIM2	P38127	377 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	BZZ1	P38822	633 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	CCT2	P39076	527 aa	Known RBP	3.01	□□□□□ -1.93
RPC40	YPR110C	VPS52	P39904	641 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	CAK1	P43568	368 aa	Predicted RBP	3.01	□□□□□ -1.93
RPC40	YPR110C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	3.01	□□□□□ -1.93	not detected
RPC40	YPR110C	TOM22	P49334	152 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	RPT4	P53549	437 aa	Known RBP	3.01	□□□□□ -1.93
RPC40	YPR110C	LSC1	P53598	329 aa	Known RBP	3.01	□□□□□ -1.93
RPC40	YPR110C	NCS2	P53923	493 aa	Predicted RBP	3.01	□□□□□ -1.93
RPC40	YPR110C	CIK1	Q01649	594 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	YDR415C	Q04033	374 aa	Predicted RBP	3.01	□□□□□ -1.93
RPC40	YPR110C	MRPL51	Q06090	140 aa	Predicted RBP	3.01	□□□□□ -1.93
RPC40	YPR110C	HSP42	Q12329	375 aa		3.01	□□□□□ -1.93
RPC40	YPR110C	MYO2	P19524	1574 aa	Known RBP	3	□□□□□ -1.93
RPC40	YPR110C	PEP1	P32319	1579 aa		3	□□□□□ -1.93
RPC40	YPR110C	HSP82	P02829	709 aa	Known RBP	3	□□□□□ -1.93
RPC40	YPR110C	LEU4	P06208	619 aa	Known RBP	3	□□□□□ -1.93
RPC40	YPR110C	MRS3	P10566	314 aa		3	□□□□□ -1.93
RPC40	YPR110C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3	□□□□□ -1.93	not detected
RPC40	YPR110C	CBP4	P37267	147 aa		3	□□□□□ -1.93
RPC40	YPR110C	ARA1	P38115	344 aa		3	□□□□□ -1.93
RPC40	YPR110C	VHC1	P38329	1120 aa		3	□□□□□ -1.93
RPC40	YPR110C	ZIM17	P42844	174 aa		3	□□□□□ -1.93
RPC40	YPR110C	IRC15	Q02733	499 aa		3	□□□□□ -1.93
RPC40	YPR110C	HOT1	Q03213	719 aa		3	□□□□□ -1.93
RPC40	YPR110C	AIM32	Q04689	311 aa		3	□□□□□ -1.93
RPC40	YPR110C	MDM30	Q05930	598 aa		3	□□□□□ -1.93
RPC40	YPR110C	NRT1	Q08485	598 aa		3	□□□□□ -1.93
RPC40	YPR110C	VAM3	Q12241	283 aa		3	□□□□□ -1.93
RPC40	YPR110C	RKM5	Q12367	367 aa		3	□□□□□ -1.93
RPC40	YPR110C	TAF2	P23255	1407 aa		3	□□□□□ -1.93
RPC40	YPR110C	CAR1	P00812	333 aa	Known RBP	2.99	□□□□□ -1.93
RPC40	YPR110C	HIR2	P32480	875 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	TFB1	P32776	642 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	APE3	P37302	537 aa	Known RBP	2.99	□□□□□ -1.93
RPC40	YPR110C	RRT2	P38332	387 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	HAT2	P39984	401 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	YJL070C	P40361	888 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	SAS2	P40963	338 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	IKS1	P47042	667 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	YJR011C	P47086	261 aa	Predicted RBP	2.99	□□□□□ -1.93
RPC40	YPR110C	ART5	P53244	586 aa	Known RBP	2.99	□□□□□ -1.93
RPC40	YPR110C	OGG1	P53397	376 aa	Predicted RBP	2.99	□□□□□ -1.93
RPC40	YPR110C	KTR5	P53966	522 aa	Predicted RBP	2.99	□□□□□ -1.93
RPC40	YPR110C	RLI1	Q03195	608 aa	Known RBP	2.99	□□□□□ -1.93
RPC40	YPR110C	ACL4	Q03771	387 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	HSP31	Q04432	237 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	ERP1	Q05359	219 aa	Known RBP	2.99	□□□□□ -1.93
RPC40	YPR110C	MMR1	Q06324	491 aa		2.99	□□□□□ -1.93
RPC40	YPR110C	SNU66	Q12420	587 aa	Predicted RBP	2.99	□□□□□ -1.93
RPC40	YPR110C	HIP1	P06775	603 aa		2.98	□□□□□ -1.93
RPC40	YPR110C	SPC110	P32380	944 aa		2.98	□□□□□ -1.93
RPC40	YPR110C	NIP1	P32497	812 aa	Known RBP	2.98	□□□□□ -1.93
RPC40	YPR110C	SLM4	P38247	162 aa		2.98	□□□□□ -1.93
RPC40	YPR110C	SAD1	P43589	448 aa		2.98	□□□□□ -1.93
RPC40	YPR110C	RPS0B	P46654	252 aa	Known RBP	2.98	□□□□□ -1.93
RPC40	YPR110C	ECM27	P47144	725 aa		2.98	□□□□□ -1.93
RPC40	YPR110C	GRS2	Q06817	618 aa		2.98	□□□□□ -1.93
RPC40	YPR110C	DAP1	Q12091	152 aa		2.98	□□□□□ -1.93
RPC40	YPR110C	MED2	Q12124	431 aa		2.98	□□□□□ -1.93
RPC40	YPR110C	RPL15A	P05748	204 aa	Known RBP	2.97	□□□□□ -1.93
RPC40	YPR110C	URA4	P20051	364 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	YCR022C	P25620	114 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	BRF1	P29056	596 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	NDC1	P32500	655 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	LOS1	P33418	1100 aa	Predicted RBP	2.97	□□□□□ -1.93
RPC40	YPR110C	LTV1	P34078	463 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	RTT107	P38850	1070 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	ELP2	P42935	788 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	TRS85	P46944	698 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	GWT1	P47026	490 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	RTT101	P47050	842 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	ARK1	P53974	638 aa		2.97	□□□□□ -1.93
RPC40	YPR110C	PNG1	Q02890	363 aa		2.97	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 40.7 ms