RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C SPC34P36131 295 aa1.54□□□□□ -2.16
VPS54YDR027C MAL33P38157 468 aa1.54□□□□□ -2.16
VPS54YDR027C IRC6P43615 237 aa1.54□□□□□ -2.16
VPS54YDR027C SRB7P47822 140 aa1.54□□□□□ -2.16
VPS54YDR027C MRPL19P53875 158 aa1.54□□□□□ -2.16
VPS54YDR027C NUS1Q12063 375 aa1.54□□□□□ -2.16
VPS54YDR027C ARP6Q12509 438 aa1.54□□□□□ -2.16
VPS54YDR027C ARG3P05150 338 aa1.53□□□□□ -2.16
VPS54YDR027C MTF1P14908 341 aaKnown RBP1.53□□□□□ -2.16
VPS54YDR027C SMY1P32364 656 aaKnown RBP1.53□□□□□ -2.16
VPS54YDR027C TFC3P34111 1160 aa1.53□□□□□ -2.16
VPS54YDR027C YNK1P36010 153 aaKnown RBP1.53□□□□□ -2.16
VPS54YDR027C MIA40P36046 403 aa1.53□□□□□ -2.16
VPS54YDR027C SRO77P38163 1010 aa1.53□□□□□ -2.16
VPS54YDR027C YER130CP39959 443 aa1.53□□□□□ -2.16
VPS54YDR027C YFR016CP43597 1233 aaKnown RBP1.53□□□□□ -2.16
VPS54YDR027C YFR020WP43600 232 aa1.53□□□□□ -2.16
VPS54YDR027C RTT101P47050 842 aa1.53□□□□□ -2.16
VPS54YDR027C RPS7BP48164 190 aaKnown RBP1.53□□□□□ -2.16
VPS54YDR027C SKG3Q06315 1026 aa1.53□□□□□ -2.16
VPS54YDR027C HUA2Q12134 243 aa1.53□□□□□ -2.16
VPS54YDR027C SPE4Q12455 300 aa1.53□□□□□ -2.16
VPS54YDR027C YBR085C-AO43137 85 aa1.53□□□□□ -2.16
VPS54YDR027C SEC53P07283 254 aaKnown RBP1.53□□□□□ -2.16
VPS54YDR027C AXL1P40851 1208 aa1.53□□□□□ -2.16
VPS54YDR027C RMD8P43620 662 aa1.53□□□□□ -2.16
VPS54YDR027C SOL4P53315 255 aa1.53□□□□□ -2.16
VPS54YDR027C YML037CQ03703 340 aa1.53□□□□□ -2.16
VPS54YDR027C TAF11Q04226 346 aa1.53□□□□□ -2.16
VPS54YDR027C NOP58Q12499 511 aaKnown RBP1.53□□□□□ -2.16
VPS54YDR027C PGA3Q12746 312 aaKnown RBP1.53□□□□□ -2.16
VPS54YDR027C HSH49Q99181 213 aaPredicted RBP1.53□□□□□ -2.16
VPS54YDR027C YLL067CQ07888 1374 aa1.53□□□□□ -2.16
VPS54YDR027C GCN4P03069 281 aa1.53□□□□□ -2.17
VPS54YDR027C MET17P06106 444 aa1.53□□□□□ -2.17
VPS54YDR027C PGS1P25578 521 aa1.53□□□□□ -2.17
VPS54YDR027C YBL029WP38201 376 aa1.53□□□□□ -2.17
VPS54YDR027C FLC2P39719 783 aa1.53□□□□□ -2.17
VPS54YDR027C YTA12P40341 825 aa1.53□□□□□ -2.17
VPS54YDR027C SPO22P40511 975 aa1.53□□□□□ -2.17
VPS54YDR027C SGN1P40561 250 aaKnown RBP RIP-Chip data1.53□□□□□ -2.17not detected
VPS54YDR027C VTC2P43585 828 aa1.53□□□□□ -2.17
VPS54YDR027C COS10P52924 374 aa1.53□□□□□ -2.17
VPS54YDR027C PKP2P53170 491 aa1.53□□□□□ -2.17
VPS54YDR027C YGR117CP53270 476 aa1.53□□□□□ -2.17
VPS54YDR027C RPT6Q01939 405 aaKnown RBP1.53□□□□□ -2.17
VPS54YDR027C RPM2Q02773 1202 aa1.53□□□□□ -2.17
VPS54YDR027C ERO1Q03103 563 aa1.53□□□□□ -2.17
VPS54YDR027C ERP1Q05359 219 aaKnown RBP1.53□□□□□ -2.17
VPS54YDR027C SLM3Q12093 417 aa1.53□□□□□ -2.17
VPS54YDR027C RED1P14291 827 aa1.52□□□□□ -2.17
VPS54YDR027C PWP1P21304 576 aaKnown RBP1.52□□□□□ -2.17
VPS54YDR027C PRE8P23639 250 aa1.52□□□□□ -2.17
VPS54YDR027C NDC1P32500 655 aa1.52□□□□□ -2.17
VPS54YDR027C PTR2P32901 601 aa1.52□□□□□ -2.17
VPS54YDR027C MFT1P33441 392 aaKnown RBP1.52□□□□□ -2.17
VPS54YDR027C CCT6P39079 546 aa1.52□□□□□ -2.17
VPS54YDR027C YEL057CP39983 233 aa1.52□□□□□ -2.17
VPS54YDR027C PRE5P40302 234 aaKnown RBP1.52□□□□□ -2.17
VPS54YDR027C SGM1P47166 707 aa1.52□□□□□ -2.17
VPS54YDR027C YGR250CP53316 781 aaKnown RBP1.52□□□□□ -2.17
VPS54YDR027C RPC11Q04307 110 aaPredicted RBP1.52□□□□□ -2.17
VPS54YDR027C CDC45Q08032 650 aa1.52□□□□□ -2.17
VPS54YDR027C TCO89Q08921 799 aa1.52□□□□□ -2.17
VPS54YDR027C CTI6Q08923 506 aa1.52□□□□□ -2.17
VPS54YDR027C NMD4Q12129 218 aa1.52□□□□□ -2.17
VPS54YDR027C ERP4Q12450 207 aa1.52□□□□□ -2.17
VPS54YDR027C ARD1P07347 238 aaPredicted RBP1.52□□□□□ -2.17
VPS54YDR027C CBS1P14066 229 aa1.52□□□□□ -2.17
VPS54YDR027C TYR1P20049 452 aa1.52□□□□□ -2.17
VPS54YDR027C PEP3P27801 918 aa1.52□□□□□ -2.17
VPS54YDR027C ATS1P31386 333 aa1.52□□□□□ -2.17
VPS54YDR027C IST1P53843 298 aaPredicted RBP1.52□□□□□ -2.17
VPS54YDR027C INA17Q02888 182 aa1.52□□□□□ -2.17
VPS54YDR027C SYF1Q04048 859 aaPredicted RBP1.52□□□□□ -2.17
VPS54YDR027C YLR287CQ05881 355 aa1.52□□□□□ -2.17
VPS54YDR027C ATG26Q06321 1198 aa1.52□□□□□ -2.17
VPS54YDR027C PSR1Q07800 427 aa1.52□□□□□ -2.17
VPS54YDR027C GRC3Q07845 632 aa1.52□□□□□ -2.17
VPS54YDR027C YPL272CQ08984 517 aa1.52□□□□□ -2.17
VPS54YDR027C RCN2Q12044 265 aa1.52□□□□□ -2.17
VPS54YDR027C ATG9Q12142 997 aa1.52□□□□□ -2.17
VPS54YDR027C RRG1Q12167 365 aaPredicted RBP1.52□□□□□ -2.17
VPS54YDR027C GRX6Q12438 231 aa1.52□□□□□ -2.17
VPS54YDR027C LYS2P07702 1392 aa1.51□□□□□ -2.17
VPS54YDR027C CKA1P15790 372 aa1.51□□□□□ -2.17
VPS54YDR027C FUR1P18562 216 aaKnown RBP1.51□□□□□ -2.17
VPS54YDR027C ROX1P25042 368 aa1.51□□□□□ -2.17
VPS54YDR027C ERG3P32353 365 aa1.51□□□□□ -2.17
VPS54YDR027C PDB1P32473 366 aaKnown RBP1.51□□□□□ -2.17
VPS54YDR027C YEL045CP32616 141 aa1.51□□□□□ -2.17
VPS54YDR027C AUR1P36107 401 aaPredicted RBP1.51□□□□□ -2.17
VPS54YDR027C NOP4P37838 685 aaKnown RBP1.51□□□□□ -2.17
VPS54YDR027C AGP2P38090 596 aa1.51□□□□□ -2.17
VPS54YDR027C RPR2P40571 144 aa1.51□□□□□ -2.17
VPS54YDR027C SMC3P47037 1230 aa1.51□□□□□ -2.17
VPS54YDR027C SPC19Q03954 165 aa1.51□□□□□ -2.17
VPS54YDR027C PAL1Q05518 499 aaKnown RBP1.51□□□□□ -2.17
VPS54YDR027C HEL2Q05580 639 aaKnown RBP1.51□□□□□ -2.17
VPS54YDR027C RTT109Q07794 436 aa1.51□□□□□ -2.17
Retrieved 100 of 5,963 RNA–protein pairs in 41.3 ms