RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	SPT23	P35210	1082 aa		5.03	□□□□□ -1.6
LCB4	YOR171C	NMA111	P53920	997 aa		5.03	□□□□□ -1.6
LCB4	YOR171C	YRR1	Q12172	810 aa		5.03	□□□□□ -1.6
LCB4	YOR171C	SIT4	P20604	311 aa		5.03	□□□□□ -1.6
LCB4	YOR171C	SCJ1	P25303	377 aa		5.03	□□□□□ -1.6
LCB4	YOR171C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	5.02	□□□□□ -1.61	not detected
LCB4	YOR171C	HGH1	P48362	394 aa	Known RBP	5.02	□□□□□ -1.61
LCB4	YOR171C	HST2	P53686	357 aa		5.02	□□□□□ -1.61
LCB4	YOR171C	YMR196W	Q04336	1088 aa		5.01	□□□□□ -1.61
LCB4	YOR171C	GLN1	P32288	370 aa	Known RBP	5	□□□□□ -1.61
LCB4	YOR171C	BRL1	P38770	471 aa		5	□□□□□ -1.61
LCB4	YOR171C	RLF2	Q12495	606 aa		5	□□□□□ -1.61
LCB4	YOR171C	PDR1	P12383	1068 aa		4.99	□□□□□ -1.61
LCB4	YOR171C	HAP5	Q02516	242 aa		4.99	□□□□□ -1.61
LCB4	YOR171C	ESS1	P22696	170 aa		4.98	□□□□□ -1.61
LCB4	YOR171C	MMP1	Q12372	583 aa		4.98	□□□□□ -1.61
LCB4	YOR171C	YJU3	P28321	313 aa		4.98	□□□□□ -1.61
LCB4	YOR171C	NUD1	P32336	851 aa		4.98	□□□□□ -1.61
LCB4	YOR171C	PKH3	Q03306	898 aa	Predicted RBP	4.96	□□□□□ -1.61
LCB4	YOR171C	ERF2	Q06551	359 aa		4.96	□□□□□ -1.62
LCB4	YOR171C	KEX2	P13134	814 aa		4.95	□□□□□ -1.62
LCB4	YOR171C	RAM1	P22007	431 aa		4.95	□□□□□ -1.62
LCB4	YOR171C	STR2	P47164	639 aa		4.95	□□□□□ -1.62
LCB4	YOR171C	RTF1	P53064	558 aa		4.95	□□□□□ -1.62
LCB4	YOR171C	BNI4	P53858	892 aa		4.95	□□□□□ -1.62
LCB4	YOR171C	RAD59	Q12223	238 aa		4.95	□□□□□ -1.62
LCB4	YOR171C	YJL007C	P47080	104 aa		4.94	□□□□□ -1.62
LCB4	YOR171C	ISM1	P48526	1002 aa		4.94	□□□□□ -1.62
LCB4	YOR171C	YNL115C	P53925	644 aa		4.94	□□□□□ -1.62
LCB4	YOR171C	SLY41	P22215	453 aa		4.94	□□□□□ -1.62
LCB4	YOR171C	GAR1	P28007	205 aa	Known RBP	4.94	□□□□□ -1.62
LCB4	YOR171C	BIM1	P40013	344 aa		4.94	□□□□□ -1.62
LCB4	YOR171C	ATG32	P40458	529 aa		4.93	□□□□□ -1.62
LCB4	YOR171C	RSC30	P38781	883 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	YPR015C	Q12531	247 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-DR4	O74302	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-H	P0C2I4	478 aa	Known RBP	4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-A	P0CX57	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-PR1	P0CX58	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-OR	P0CX59	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-PR2	P0CX60	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-DR5	P0CX65	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-ER2	P0CX66	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-GR3	P0CX67	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-LR1	P0CX68	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-MR2	P0CX69	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	BIO2	P32451	375 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	YBL036C	P38197	257 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-JR2	P47099	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-DR1	Q03856	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-ML1	Q04706	440 aa	Known RBP	4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-BR	Q12217	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-NL2	Q12470	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	TY1A-GR2	Q12485	440 aa		4.92	□□□□□ -1.62
LCB4	YOR171C	ARG8	P18544	423 aa		4.91	□□□□□ -1.62
LCB4	YOR171C	TRM1	P15565	570 aa	Known RBP	4.9	□□□□□ -1.62
LCB4	YOR171C	SEC2	P17065	759 aa		4.9	□□□□□ -1.62
LCB4	YOR171C	NPL4	P33755	580 aa		4.9	□□□□□ -1.62
LCB4	YOR171C	LAM6	Q08001	693 aa		4.9	□□□□□ -1.63
LCB4	YOR171C	BUD20	Q08004	166 aa	Predicted RBP	4.9	□□□□□ -1.63
LCB4	YOR171C	ERG12	P07277	443 aa		4.89	□□□□□ -1.63
LCB4	YOR171C	PTC2	P39966	464 aa	Known RBP	4.89	□□□□□ -1.63
LCB4	YOR171C	AGE1	Q04412	482 aa		4.89	□□□□□ -1.63
LCB4	YOR171C	CSE4	P36012	229 aa		4.88	□□□□□ -1.63
LCB4	YOR171C	TIF1	P10081	395 aa	Known RBP	4.88	□□□□□ -1.63
LCB4	YOR171C	GCD11	P32481	527 aa	Known RBP	4.88	□□□□□ -1.63
LCB4	YOR171C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
LCB4	YOR171C	PUS6	P53294	404 aa		4.88	□□□□□ -1.63
LCB4	YOR171C	YML082W	Q04533	649 aa	Known RBP	4.87	□□□□□ -1.63
LCB4	YOR171C	MAK16	P10962	306 aa	Predicted RBP	4.86	□□□□□ -1.63
LCB4	YOR171C	TUB4	P53378	473 aa		4.86	□□□□□ -1.63
LCB4	YOR171C	YNL108C	P53929	270 aa		4.86	□□□□□ -1.63
LCB4	YOR171C	YDJ1	P25491	409 aa	Known RBP	4.86	□□□□□ -1.63
LCB4	YOR171C	TBF1	Q02457	562 aa		4.85	□□□□□ -1.63
LCB4	YOR171C	PRT1	P06103	763 aa	Known RBP	4.84	□□□□□ -1.63
LCB4	YOR171C	SUP45	P12385	437 aa	Known RBP	4.84	□□□□□ -1.63
LCB4	YOR171C	AMS1	P22855	1083 aa		4.84	□□□□□ -1.63
LCB4	YOR171C	PAC1	P39946	494 aa	Known RBP	4.84	□□□□□ -1.63
LCB4	YOR171C	RPL34B	P40525	121 aa	Known RBP	4.84	□□□□□ -1.63
LCB4	YOR171C	YDL206W	Q12424	762 aa		4.84	□□□□□ -1.63
LCB4	YOR171C	SPT5	P27692	1063 aa	Known RBP	4.83	□□□□□ -1.64
LCB4	YOR171C	ENO2	P00925	437 aa	Known RBP	4.82	□□□□□ -1.64
LCB4	YOR171C	RTG2	P32608	588 aa	Known RBP	4.82	□□□□□ -1.64
LCB4	YOR171C	RRN7	P40992	514 aa		4.82	□□□□□ -1.64
LCB4	YOR171C	YPR204W	Q08995	1032 aa		4.82	□□□□□ -1.64
LCB4	YOR171C	RPA14	P50106	137 aa		4.81	□□□□□ -1.64
LCB4	YOR171C	NAF1	P53919	492 aa	Known RBP	4.81	□□□□□ -1.64
LCB4	YOR171C	PDC1	P06169	563 aa	Known RBP	4.8	□□□□□ -1.64
LCB4	YOR171C	URN1	Q06525	465 aa	Known RBP	4.8	□□□□□ -1.64
LCB4	YOR171C	RIM21	P48565	533 aa		4.79	□□□□□ -1.64
LCB4	YOR171C	YPR097W	Q06839	1073 aa		4.79	□□□□□ -1.64
LCB4	YOR171C	SUB2	Q07478	446 aa	Known RBP	4.79	□□□□□ -1.64
LCB4	YOR171C	ENO1	P00924	437 aa	Known RBP	4.79	□□□□□ -1.64
LCB4	YOR171C	TTI1	P36097	1038 aa		4.79	□□□□□ -1.64
LCB4	YOR171C	MRX10	Q05648	414 aa		4.79	□□□□□ -1.64
LCB4	YOR171C	ALR1	Q08269	859 aa		4.79	□□□□□ -1.64
LCB4	YOR171C	CPS1	P27614	576 aa		4.78	□□□□□ -1.64
LCB4	YOR171C	MCM16	Q12262	181 aa		4.78	□□□□□ -1.64
LCB4	YOR171C	PAT1	P25644	796 aa	Known RBP	4.77	□□□□□ -1.65
LCB4	YOR171C	SPT16	P32558	1035 aa	Known RBP	4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 21.9 ms