RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W USO1P25386 1790 aa7.95□□□□□ -1.14
ATG4YNL223W MRX12P47084 519 aa7.95□□□□□ -1.14
ATG4YNL223W SPT7P35177 1332 aa7.95□□□□□ -1.14
ATG4YNL223W RIA1P53893 1110 aa7.94□□□□□ -1.14
ATG4YNL223W NAP1P25293 417 aaKnown RBP7.93□□□□□ -1.14
ATG4YNL223W SCT1P32784 759 aa7.93□□□□□ -1.14
ATG4YNL223W PDS5Q04264 1277 aa7.93□□□□□ -1.14
ATG4YNL223W CHZ1P40019 153 aaPredicted RBP7.9□□□□□ -1.14
ATG4YNL223W PSD2P53037 1138 aaKnown RBP7.9□□□□□ -1.14
ATG4YNL223W NSR1P27476 414 aaKnown RBP RIP-Chip data7.89□□□□□ -1.15not detected
ATG4YNL223W YNR029CP53729 429 aaKnown RBP7.88□□□□□ -1.15
ATG4YNL223W MIF2P35201 549 aa7.87□□□□□ -1.15
ATG4YNL223W ENP1P38333 483 aaKnown RBP7.87□□□□□ -1.15
ATG4YNL223W MLP1Q02455 1875 aaKnown RBP7.87□□□□□ -1.15
ATG4YNL223W RCM1P53972 490 aa7.87□□□□□ -1.15
ATG4YNL223W FKH1P40466 484 aa7.86□□□□□ -1.15
ATG4YNL223W PSK1P31374 1356 aa7.86□□□□□ -1.15
ATG4YNL223W YML133CQ03099 1374 aa7.86□□□□□ -1.15
ATG4YNL223W YLL067CQ07888 1374 aa7.86□□□□□ -1.15
ATG4YNL223W YLL066CQ99208 1374 aa7.86□□□□□ -1.15
ATG4YNL223W PPH3P32345 308 aa7.85□□□□□ -1.15
ATG4YNL223W SPT21P35209 758 aa7.85□□□□□ -1.15
ATG4YNL223W RTG3P38165 486 aa7.85□□□□□ -1.15
ATG4YNL223W NST1P53935 1240 aa7.85□□□□□ -1.15
ATG4YNL223W LEU3P08638 886 aa7.84□□□□□ -1.15
ATG4YNL223W YMR196WQ04336 1088 aa7.84□□□□□ -1.15
ATG4YNL223W CPS1P27614 576 aa7.83□□□□□ -1.16
ATG4YNL223W THI12P42883 340 aa7.81□□□□□ -1.16
ATG4YNL223W THI5P43534 340 aa7.81□□□□□ -1.16
ATG4YNL223W THI11P47183 340 aa7.81□□□□□ -1.16
ATG4YNL223W THI13Q07748 340 aa7.81□□□□□ -1.16
ATG4YNL223W LEU2P04173 364 aaPredicted RBP7.76□□□□□ -1.17
ATG4YNL223W YEF3P16521 1044 aaKnown RBP7.76□□□□□ -1.17
ATG4YNL223W ADE6P38972 1358 aaKnown RBP7.75□□□□□ -1.17
ATG4YNL223W MTR4P47047 1073 aaKnown RBP7.75□□□□□ -1.17
ATG4YNL223W TRK1P12685 1235 aa7.74□□□□□ -1.17
ATG4YNL223W TY4B-HP0C2J7 1802 aa7.73□□□□□ -1.17
ATG4YNL223W TY4B-JP47024 1803 aa7.73□□□□□ -1.17
ATG4YNL223W PRS1P32895 427 aaKnown RBP7.73□□□□□ -1.17
ATG4YNL223W PDI1P17967 522 aaKnown RBP7.72□□□□□ -1.17
ATG4YNL223W PRP43P53131 767 aaKnown RBP7.72□□□□□ -1.17
ATG4YNL223W TAP42Q04372 366 aa7.72□□□□□ -1.17
ATG4YNL223W IOC4Q04213 475 aa7.71□□□□□ -1.18
ATG4YNL223W AUS1Q08409 1394 aa7.7□□□□□ -1.18
ATG4YNL223W TFA1P36100 482 aa7.7□□□□□ -1.18
ATG4YNL223W YKR023WP36119 530 aaKnown RBP7.7□□□□□ -1.18
ATG4YNL223W RPS24AP0CX31 135 aaKnown RBP7.69□□□□□ -1.18
ATG4YNL223W RPS24BP0CX32 135 aaKnown RBP7.69□□□□□ -1.18
ATG4YNL223W CSE4P36012 229 aa7.69□□□□□ -1.18
ATG4YNL223W SNF2P22082 1703 aa7.69□□□□□ -1.18
ATG4YNL223W RTF1P53064 558 aa7.68□□□□□ -1.18
ATG4YNL223W HIM1Q06674 414 aa7.68□□□□□ -1.18
ATG4YNL223W GRX4P32642 244 aa7.68□□□□□ -1.18
ATG4YNL223W KAR2P16474 682 aaKnown RBP7.67□□□□□ -1.18
ATG4YNL223W CDC27P38042 758 aa7.67□□□□□ -1.18
ATG4YNL223W YFR006WP43590 535 aa7.67□□□□□ -1.18
ATG4YNL223W PTP3P40048 928 aa7.66□□□□□ -1.18
ATG4YNL223W RRP46P53256 223 aaPredicted RBP7.66□□□□□ -1.18
ATG4YNL223W YIL177CP40434 1758 aa7.66□□□□□ -1.18
ATG4YNL223W YJL225CP40889 1758 aa7.66□□□□□ -1.18
ATG4YNL223W RRP5Q05022 1729 aaKnown RBP7.65□□□□□ -1.19
ATG4YNL223W RPP0P05317 312 aaKnown RBP7.64□□□□□ -1.19
ATG4YNL223W GAS4Q08271 471 aa7.64□□□□□ -1.19
ATG4YNL223W YRF1-2P40105 1681 aa7.64□□□□□ -1.19
ATG4YNL223W RIM101P33400 625 aa7.63□□□□□ -1.19
ATG4YNL223W DPS1P04802 557 aaKnown RBP7.62□□□□□ -1.19
ATG4YNL223W YGL015CP33199 130 aa7.62□□□□□ -1.19
ATG4YNL223W YDL144CQ07589 356 aa7.62□□□□□ -1.19
ATG4YNL223W PRP5P21372 849 aaPredicted RBP7.62□□□□□ -1.19
ATG4YNL223W VPS27P40343 622 aaKnown RBP7.62□□□□□ -1.19
ATG4YNL223W RPO41P13433 1351 aaKnown RBP7.61□□□□□ -1.19
ATG4YNL223W PRP45P28004 379 aaPredicted RBP7.61□□□□□ -1.19
ATG4YNL223W RTR1P40084 226 aaPredicted RBP7.61□□□□□ -1.19
ATG4YNL223W MPP10P47083 593 aaKnown RBP7.61□□□□□ -1.19
ATG4YNL223W PAP2P53632 584 aaKnown RBP7.61□□□□□ -1.19
ATG4YNL223W CDC45Q08032 650 aa7.6□□□□□ -1.19
ATG4YNL223W APC1P53886 1748 aa7.6□□□□□ -1.19
ATG4YNL223W URB1P34241 1764 aaKnown RBP7.59□□□□□ -1.19
ATG4YNL223W FKS3Q04952 1785 aa7.59□□□□□ -1.19
ATG4YNL223W PRD1P25375 712 aa7.58□□□□□ -1.2
ATG4YNL223W MSB3P48566 633 aaPredicted RBP7.58□□□□□ -1.2
ATG4YNL223W SLM3Q12093 417 aa7.58□□□□□ -1.2
ATG4YNL223W RVB2Q12464 471 aaKnown RBP7.57□□□□□ -1.2
ATG4YNL223W SUI2P20459 304 aaKnown RBP7.56□□□□□ -1.2
ATG4YNL223W BUB1P41695 1021 aaKnown RBP RIP-Chip data7.56□□□□□ -1.2not detected
ATG4YNL223W THI22Q06490 572 aa7.56□□□□□ -1.2
ATG4YNL223W YRF1-4O13559 1382 aa7.56□□□□□ -1.2
ATG4YNL223W AKL1P38080 1108 aaKnown RBP7.55□□□□□ -1.2
ATG4YNL223W SAP155P43612 1002 aa7.55□□□□□ -1.2
ATG4YNL223W TFC8Q12308 588 aa7.55□□□□□ -1.2
ATG4YNL223W TCB1Q12466 1186 aa7.54□□□□□ -1.2
ATG4YNL223W HOP09932 586 aa7.53□□□□□ -1.2
ATG4YNL223W DSD1P53095 428 aa7.53□□□□□ -1.2
ATG4YNL223W YRB30P53107 440 aaPredicted RBP7.53□□□□□ -1.2
ATG4YNL223W HEF3P53978 1044 aaKnown RBP7.53□□□□□ -1.2
ATG4YNL223W ENT1Q12518 454 aa7.53□□□□□ -1.2
ATG4YNL223W TPD3P31383 635 aa7.52□□□□□ -1.21
ATG4YNL223W NOP2P40991 618 aaKnown RBP7.52□□□□□ -1.21
ATG4YNL223W XKS1P42826 600 aa7.51□□□□□ -1.21
ATG4YNL223W RTT109Q07794 436 aa7.51□□□□□ -1.21
Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms