RNA–Protein interactions for RNA: YLR378C

SEC61, Transcript of Conserved ER protein translocation channel, yeastyeast

Gene SEC61, Length 1,443 nt, Biotype protein coding, Subcellular localisation Mitochondria, Peroxisome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC61YLR378C RCM1P53972 490 aa12.06□□□□□ -0.48
SEC61YLR378C NSR1P27476 414 aaKnown RBP RIP-Chip data12.05□□□□□ -0.48not detected
SEC61YLR378C RTG3P38165 486 aa12.04□□□□□ -0.48
SEC61YLR378C FKH1P40466 484 aa12.04□□□□□ -0.48
SEC61YLR378C PSK1P31374 1356 aa12.03□□□□□ -0.48
SEC61YLR378C TFA1P36100 482 aa12□□□□□ -0.49
SEC61YLR378C CPS1P27614 576 aa11.99□□□□□ -0.49
SEC61YLR378C PPH3P32345 308 aa11.99□□□□□ -0.49
SEC61YLR378C THI12P42883 340 aa11.97□□□□□ -0.49
SEC61YLR378C THI5P43534 340 aa11.97□□□□□ -0.49
SEC61YLR378C THI11P47183 340 aa11.97□□□□□ -0.49
SEC61YLR378C THI13Q07748 340 aa11.97□□□□□ -0.49
SEC61YLR378C LEU2P04173 364 aaPredicted RBP11.95□□□□□ -0.5
SEC61YLR378C NST1P53935 1240 aa11.94□□□□□ -0.5
SEC61YLR378C YML133CQ03099 1374 aa11.92□□□□□ -0.5
SEC61YLR378C YLL067CQ07888 1374 aa11.92□□□□□ -0.5
SEC61YLR378C YLL066CQ99208 1374 aa11.92□□□□□ -0.5
SEC61YLR378C MTR4P47047 1073 aaKnown RBP11.92□□□□□ -0.5
SEC61YLR378C PDI1P17967 522 aaKnown RBP11.89□□□□□ -0.51
SEC61YLR378C RTF1P53064 558 aa11.89□□□□□ -0.51
SEC61YLR378C CSE4P36012 229 aa11.86□□□□□ -0.51
SEC61YLR378C TAP42Q04372 366 aa11.86□□□□□ -0.51
SEC61YLR378C KAR2P16474 682 aaKnown RBP11.84□□□□□ -0.51
SEC61YLR378C GRX4P32642 244 aa11.84□□□□□ -0.51
SEC61YLR378C IOC4Q04213 475 aa11.84□□□□□ -0.51
SEC61YLR378C ADE6P38972 1358 aaKnown RBP11.83□□□□□ -0.52
SEC61YLR378C TRK1P12685 1235 aa11.83□□□□□ -0.52
SEC61YLR378C YEF3P16521 1044 aaKnown RBP11.83□□□□□ -0.52
SEC61YLR378C PRP43P53131 767 aaKnown RBP11.83□□□□□ -0.52
SEC61YLR378C RPS24AP0CX31 135 aaKnown RBP11.81□□□□□ -0.52
SEC61YLR378C RPS24BP0CX32 135 aaKnown RBP11.81□□□□□ -0.52
SEC61YLR378C PRS1P32895 427 aaKnown RBP11.81□□□□□ -0.52
SEC61YLR378C YFR006WP43590 535 aa11.78□□□□□ -0.52
SEC61YLR378C RPP0P05317 312 aaKnown RBP11.77□□□□□ -0.52
SEC61YLR378C PAP2P53632 584 aaKnown RBP11.77□□□□□ -0.53
SEC61YLR378C HIM1Q06674 414 aa11.77□□□□□ -0.53
SEC61YLR378C TY4B-HP0C2J7 1802 aa11.76□□□□□ -0.53
SEC61YLR378C TY4B-JP47024 1803 aa11.76□□□□□ -0.53
SEC61YLR378C GAS4Q08271 471 aa11.76□□□□□ -0.53
SEC61YLR378C DPS1P04802 557 aaKnown RBP11.74□□□□□ -0.53
SEC61YLR378C VPS27P40343 622 aaKnown RBP11.74□□□□□ -0.53
SEC61YLR378C YDL144CQ07589 356 aa11.74□□□□□ -0.53
SEC61YLR378C SNF2P22082 1703 aa11.73□□□□□ -0.53
SEC61YLR378C AUS1Q08409 1394 aa11.73□□□□□ -0.53
SEC61YLR378C PTP3P40048 928 aa11.72□□□□□ -0.53
SEC61YLR378C RTR1P40084 226 aaPredicted RBP11.72□□□□□ -0.53
SEC61YLR378C CDC45Q08032 650 aa11.72□□□□□ -0.53
SEC61YLR378C PRP5P21372 849 aaPredicted RBP11.7□□□□□ -0.54
SEC61YLR378C PRP45P28004 379 aaPredicted RBP11.7□□□□□ -0.54
SEC61YLR378C RPO41P13433 1351 aaKnown RBP11.68□□□□□ -0.54
SEC61YLR378C MPP10P47083 593 aaKnown RBP11.68□□□□□ -0.54
SEC61YLR378C RRP5Q05022 1729 aaKnown RBP11.67□□□□□ -0.54
SEC61YLR378C RRP46P53256 223 aaPredicted RBP11.67□□□□□ -0.54
SEC61YLR378C YRF1-2P40105 1681 aa11.63□□□□□ -0.55
SEC61YLR378C PRD1P25375 712 aa11.63□□□□□ -0.55
SEC61YLR378C SLM3Q12093 417 aa11.63□□□□□ -0.55
SEC61YLR378C BUB1P41695 1021 aaKnown RBP RIP-Chip data11.62□□□□□ -0.55not detected
SEC61YLR378C YRB30P53107 440 aaPredicted RBP11.62□□□□□ -0.55
SEC61YLR378C RVB2Q12464 471 aaKnown RBP11.62□□□□□ -0.55
SEC61YLR378C MSB3P48566 633 aaPredicted RBP11.61□□□□□ -0.55
SEC61YLR378C TCB1Q12466 1186 aa11.61□□□□□ -0.55
SEC61YLR378C AKL1P38080 1108 aaKnown RBP11.6□□□□□ -0.55
SEC61YLR378C NOP2P40991 618 aaKnown RBP11.6□□□□□ -0.55
SEC61YLR378C SUI2P20459 304 aaKnown RBP11.6□□□□□ -0.55
SEC61YLR378C SAP155P43612 1002 aa11.6□□□□□ -0.55
SEC61YLR378C FKS3Q04952 1785 aa11.59□□□□□ -0.55
SEC61YLR378C APC1P53886 1748 aa11.59□□□□□ -0.55
SEC61YLR378C YIL177CP40434 1758 aa11.59□□□□□ -0.55
SEC61YLR378C YJL225CP40889 1758 aa11.59□□□□□ -0.55
SEC61YLR378C ENT1Q12518 454 aa11.59□□□□□ -0.55
SEC61YLR378C DSD1P53095 428 aa11.58□□□□□ -0.56
SEC61YLR378C URB1P34241 1764 aaKnown RBP11.58□□□□□ -0.56
SEC61YLR378C TPD3P31383 635 aa11.57□□□□□ -0.56
SEC61YLR378C THI22Q06490 572 aa11.57□□□□□ -0.56
SEC61YLR378C REB1P21538 810 aa11.56□□□□□ -0.56
SEC61YLR378C XKS1P42826 600 aa11.56□□□□□ -0.56
SEC61YLR378C YAH1Q12184 172 aaKnown RBP11.55□□□□□ -0.56
SEC61YLR378C HSP104P31539 908 aaKnown RBP11.54□□□□□ -0.56
SEC61YLR378C CTF4Q01454 927 aa11.54□□□□□ -0.56
SEC61YLR378C RSF2P46974 1380 aa11.52□□□□□ -0.56
SEC61YLR378C YNL050CP53952 270 aa11.52□□□□□ -0.57
SEC61YLR378C AOS1Q06624 347 aa11.52□□□□□ -0.57
SEC61YLR378C RTT109Q07794 436 aa11.52□□□□□ -0.57
SEC61YLR378C ENV9Q08651 330 aa11.52□□□□□ -0.57
SEC61YLR378C YRF1-4O13559 1382 aa11.51□□□□□ -0.57
SEC61YLR378C NTH2P35172 780 aa11.51□□□□□ -0.57
SEC61YLR378C NAB6Q03735 1134 aaKnown RBP RIP-Chip data11.51□□□□□ -0.57not detected
SEC61YLR378C RCR1P38212 213 aa11.5□□□□□ -0.57
SEC61YLR378C FUN12P39730 1002 aaKnown RBP11.5□□□□□ -0.57
SEC61YLR378C APP1P53933 587 aa11.5□□□□□ -0.57
SEC61YLR378C HEF3P53978 1044 aaKnown RBP11.5□□□□□ -0.57
SEC61YLR378C FPR3P38911 411 aaKnown RBP11.49□□□□□ -0.57
SEC61YLR378C MAM1P40065 302 aa11.49□□□□□ -0.57
SEC61YLR378C ZDS1P50111 915 aaKnown RBP11.49□□□□□ -0.57
SEC61YLR378C RAD2P07276 1031 aa11.48□□□□□ -0.57
SEC61YLR378C IES2P40154 320 aa11.48□□□□□ -0.57
SEC61YLR378C MAK21Q12176 1025 aaKnown RBP11.48□□□□□ -0.57
SEC61YLR378C SIR4P11978 1358 aa11.47□□□□□ -0.57
SEC61YLR378C MEC3Q02574 474 aa11.47□□□□□ -0.57
SEC61YLR378C GYP7P48365 746 aa11.46□□□□□ -0.57
Retrieved 100 of 5,963 RNA–protein pairs in 33.1 ms