RNA–Protein interactions for RNA: YGL172W

NUP49, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP49, Length 1,419 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP49YGL172W TAF8Q03750 510 aa9.31□□□□□ -0.92
NUP49YGL172W NAP1P25293 417 aaKnown RBP9.29□□□□□ -0.92
NUP49YGL172W ORC1P54784 914 aaPredicted RBP9.28□□□□□ -0.92
NUP49YGL172W RPL17AP05740 184 aaKnown RBP9.27□□□□□ -0.93
NUP49YGL172W RPL17BP46990 184 aaKnown RBP9.27□□□□□ -0.93
NUP49YGL172W KIP3P53086 805 aaKnown RBP9.27□□□□□ -0.93
NUP49YGL172W REB1P21538 810 aa9.26□□□□□ -0.93
NUP49YGL172W TY3B-IQ7LHG5 1498 aaKnown RBP9.25□□□□□ -0.93
NUP49YGL172W MRPL32P25348 183 aa9.24□□□□□ -0.93
NUP49YGL172W SPE2P21182 396 aa9.23□□□□□ -0.93
NUP49YGL172W RCM1P53972 490 aa9.22□□□□□ -0.93
NUP49YGL172W YLR419WQ06698 1435 aaKnown RBP9.2□□□□□ -0.94
NUP49YGL172W CPS1P27614 576 aa9.18□□□□□ -0.94
NUP49YGL172W PPH3P32345 308 aa9.17□□□□□ -0.94
NUP49YGL172W POL5P39985 1022 aaKnown RBP9.16□□□□□ -0.94
NUP49YGL172W LEO1P38439 464 aa9.15□□□□□ -0.94
NUP49YGL172W PTP3P40048 928 aa9.15□□□□□ -0.94
NUP49YGL172W CHZ1P40019 153 aaPredicted RBP9.14□□□□□ -0.95
NUP49YGL172W PSK1P31374 1356 aa9.12□□□□□ -0.95
NUP49YGL172W SCT1P32784 759 aa9.11□□□□□ -0.95
NUP49YGL172W APP1P53933 587 aa9.09□□□□□ -0.95
NUP49YGL172W YAH1Q12184 172 aaKnown RBP9.08□□□□□ -0.96
NUP49YGL172W PRP45P28004 379 aaPredicted RBP9.05□□□□□ -0.96
NUP49YGL172W ADE6P38972 1358 aaKnown RBP9.05□□□□□ -0.96
NUP49YGL172W MHP1P43638 1398 aa9.05□□□□□ -0.96
NUP49YGL172W LEU2P04173 364 aaPredicted RBP9.05□□□□□ -0.96
NUP49YGL172W TY4B-HP0C2J7 1802 aa9.05□□□□□ -0.96
NUP49YGL172W TY4B-JP47024 1803 aa9.05□□□□□ -0.96
NUP49YGL172W YML133CQ03099 1374 aa9.04□□□□□ -0.96
NUP49YGL172W YLL067CQ07888 1374 aa9.04□□□□□ -0.96
NUP49YGL172W YLL066CQ99208 1374 aa9.04□□□□□ -0.96
NUP49YGL172W ENT1Q12518 454 aa9.04□□□□□ -0.96
NUP49YGL172W RRP5Q05022 1729 aaKnown RBP9.03□□□□□ -0.96
NUP49YGL172W MTR4P47047 1073 aaKnown RBP9.03□□□□□ -0.96
NUP49YGL172W CSE4P36012 229 aa9.02□□□□□ -0.97
NUP49YGL172W RTG3P38165 486 aa9.02□□□□□ -0.97
NUP49YGL172W FKH1P40466 484 aa9.02□□□□□ -0.97
NUP49YGL172W PDS5Q04264 1277 aa9.02□□□□□ -0.97
NUP49YGL172W RPS24AP0CX31 135 aaKnown RBP9.01□□□□□ -0.97
NUP49YGL172W RPS24BP0CX32 135 aaKnown RBP9.01□□□□□ -0.97
NUP49YGL172W PRP5P21372 849 aaPredicted RBP9.01□□□□□ -0.97
NUP49YGL172W ENV9Q08651 330 aa9□□□□□ -0.97
NUP49YGL172W PRP43P53131 767 aaKnown RBP8.98□□□□□ -0.97
NUP49YGL172W MLP1Q02455 1875 aaKnown RBP8.98□□□□□ -0.97
NUP49YGL172W MSB3P48566 633 aaPredicted RBP8.97□□□□□ -0.97
NUP49YGL172W YIL055CP40523 627 aaKnown RBP8.96□□□□□ -0.98
NUP49YGL172W YRF1-2P40105 1681 aa8.95□□□□□ -0.98
NUP49YGL172W PDI1P17967 522 aaKnown RBP8.95□□□□□ -0.98
NUP49YGL172W IMH1Q06704 911 aaKnown RBP8.94□□□□□ -0.98
NUP49YGL172W RTF1P53064 558 aa8.93□□□□□ -0.98
NUP49YGL172W GAS4Q08271 471 aa8.93□□□□□ -0.98
NUP49YGL172W SLM3Q12093 417 aa8.92□□□□□ -0.98
NUP49YGL172W TCB1Q12466 1186 aa8.92□□□□□ -0.98
NUP49YGL172W DPS1P04802 557 aaKnown RBP8.91□□□□□ -0.98
NUP49YGL172W NST1P53935 1240 aa8.9□□□□□ -0.98
NUP49YGL172W YIL177CP40434 1758 aa8.89□□□□□ -0.99
NUP49YGL172W YJL225CP40889 1758 aa8.89□□□□□ -0.99
NUP49YGL172W PSD2P53037 1138 aaKnown RBP8.89□□□□□ -0.99
NUP49YGL172W TAP42Q04372 366 aa8.89□□□□□ -0.99
NUP49YGL172W GLN1P32288 370 aaKnown RBP8.88□□□□□ -0.99
NUP49YGL172W HIM1Q06674 414 aa8.88□□□□□ -0.99
NUP49YGL172W RSF2P46974 1380 aa8.88□□□□□ -0.99
NUP49YGL172W AUS1Q08409 1394 aa8.88□□□□□ -0.99
NUP49YGL172W LEU3P08638 886 aa8.88□□□□□ -0.99
NUP49YGL172W GRX4P32642 244 aa8.88□□□□□ -0.99
NUP49YGL172W IES2P40154 320 aa8.87□□□□□ -0.99
NUP49YGL172W SEC3P33332 1336 aaKnown RBP8.86□□□□□ -0.99
NUP49YGL172W KAR2P16474 682 aaKnown RBP8.86□□□□□ -0.99
NUP49YGL172W YEF3P16521 1044 aaKnown RBP8.86□□□□□ -0.99
NUP49YGL172W XKS1P42826 600 aa8.86□□□□□ -0.99
NUP49YGL172W SPT7P35177 1332 aa8.85□□□□□ -0.99
NUP49YGL172W ENP1P38333 483 aaKnown RBP8.85□□□□□ -0.99
NUP49YGL172W TRK1P12685 1235 aa8.84□□□□□ -0.99
NUP49YGL172W URB1P34241 1764 aaKnown RBP8.84□□□□□ -0.99
NUP49YGL172W FKS3Q04952 1785 aa8.84□□□□□ -0.99
NUP49YGL172W YMR074CQ04773 145 aa8.83□□□□□ -1
NUP49YGL172W APC1P53886 1748 aa8.83□□□□□ -1
NUP49YGL172W YGL015CP33199 130 aa8.81□□□□□ -1
NUP49YGL172W PAP2P53632 584 aaKnown RBP8.81□□□□□ -1
NUP49YGL172W DOT5P40553 215 aa8.8□□□□□ -1
NUP49YGL172W YKL133CP36066 463 aa8.8□□□□□ -1
NUP49YGL172W SSP1P38871 571 aa8.8□□□□□ -1
NUP49YGL172W ROM2P51862 1356 aaKnown RBP8.79□□□□□ -1
NUP49YGL172W RCR1P38212 213 aa8.79□□□□□ -1
NUP49YGL172W BUB1P41695 1021 aaKnown RBP RIP-Chip data8.79□□□□□ -1not detected
NUP49YGL172W RPO41P13433 1351 aaKnown RBP8.79□□□□□ -1
NUP49YGL172W YRF1-3P0CX14 1859 aa8.78□□□□□ -1
NUP49YGL172W YRF1-7P0CX15 1859 aa8.78□□□□□ -1
NUP49YGL172W YRF1-6P53819 1859 aa8.78□□□□□ -1
NUP49YGL172W RIM101P33400 625 aa8.78□□□□□ -1
NUP49YGL172W FOX2Q02207 900 aaKnown RBP8.78□□□□□ -1
NUP49YGL172W SIR4P11978 1358 aa8.76□□□□□ -1.01
NUP49YGL172W RPN11P43588 306 aaKnown RBP8.76□□□□□ -1.01
NUP49YGL172W BUD31P25337 157 aaPredicted RBP8.75□□□□□ -1.01
NUP49YGL172W YRF1-4O13559 1382 aa8.74□□□□□ -1.01
NUP49YGL172W COBP00163 385 aa8.74□□□□□ -1.01
NUP49YGL172W MEC3Q02574 474 aa8.74□□□□□ -1.01
NUP49YGL172W CDC27P38042 758 aa8.73□□□□□ -1.01
NUP49YGL172W DSD1P53095 428 aa8.73□□□□□ -1.01
NUP49YGL172W RRP46P53256 223 aaPredicted RBP8.73□□□□□ -1.01
Retrieved 100 of 5,963 RNA–protein pairs in 68.9 ms