RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	RTG1	P32607	177 aa		4.03	□□□□□ -1.76
UBP1	YDL122W	HAP1	P0CE41	1502 aa		4.03	□□□□□ -1.76
UBP1	YDL122W	YAP3	P38749	330 aa		4.03	□□□□□ -1.76
UBP1	YDL122W	YMR074C	Q04773	145 aa		4.03	□□□□□ -1.76
UBP1	YDL122W	POL1	P13382	1468 aa		4.03	□□□□□ -1.76
UBP1	YDL122W	YTA7	P40340	1379 aa		4.02	□□□□□ -1.77
UBP1	YDL122W	URN1	Q06525	465 aa	Known RBP	3.97	□□□□□ -1.77
UBP1	YDL122W	NUP157	P40064	1391 aa	Known RBP	3.97	□□□□□ -1.77
UBP1	YDL122W	STH1	P32597	1359 aa		3.97	□□□□□ -1.77
UBP1	YDL122W	YBT1	P32386	1661 aa		3.97	□□□□□ -1.77
UBP1	YDL122W	CHL1	P22516	861 aa	Predicted RBP	3.96	□□□□□ -1.77
UBP1	YDL122W	THI12	P42883	340 aa		3.96	□□□□□ -1.77
UBP1	YDL122W	THI5	P43534	340 aa		3.96	□□□□□ -1.77
UBP1	YDL122W	THI11	P47183	340 aa		3.96	□□□□□ -1.77
UBP1	YDL122W	THI13	Q07748	340 aa		3.96	□□□□□ -1.77
UBP1	YDL122W	EAP1	P36041	632 aa	Known RBP	3.96	□□□□□ -1.78
UBP1	YDL122W	XDJ1	P39102	459 aa		3.96	□□□□□ -1.78
UBP1	YDL122W	DPS1	P04802	557 aa	Known RBP	3.95	□□□□□ -1.78
UBP1	YDL122W	BCK1	Q01389	1478 aa		3.94	□□□□□ -1.78
UBP1	YDL122W	SEC61	P32915	480 aa		3.94	□□□□□ -1.78
UBP1	YDL122W	VMR1	P38735	1592 aa		3.94	□□□□□ -1.78
UBP1	YDL122W	NUP188	P52593	1655 aa	Known RBP	3.94	□□□□□ -1.78
UBP1	YDL122W	YSP2	Q06681	1438 aa		3.94	□□□□□ -1.78
UBP1	YDL122W	MSB4	Q12317	492 aa		3.93	□□□□□ -1.78
UBP1	YDL122W	OXP1	P28273	1286 aa		3.93	□□□□□ -1.78
UBP1	YDL122W	RTT106	P40161	455 aa		3.92	□□□□□ -1.78
UBP1	YDL122W	YNL035C	P53962	389 aa	Known RBP	3.92	□□□□□ -1.78
UBP1	YDL122W	EDE1	P34216	1381 aa		3.91	□□□□□ -1.78
UBP1	YDL122W	IML1	P47170	1584 aa		3.9	□□□□□ -1.79
UBP1	YDL122W	SRC1	Q03707	834 aa		3.89	□□□□□ -1.79
UBP1	YDL122W	TRP5	P00931	707 aa	Known RBP	3.89	□□□□□ -1.79
UBP1	YDL122W	PRE3	P38624	215 aa		3.89	□□□□□ -1.79
UBP1	YDL122W	SAP30	P38429	201 aa		3.88	□□□□□ -1.79
UBP1	YDL122W	YRF1-2	P40105	1681 aa		3.88	□□□□□ -1.79
UBP1	YDL122W	UBP1	P25037	809 aa		3.87	□□□□□ -1.79
UBP1	YDL122W	TFG1	P41895	735 aa	Predicted RBP	3.87	□□□□□ -1.79
UBP1	YDL122W	ENV9	Q08651	330 aa		3.87	□□□□□ -1.79
UBP1	YDL122W	SEC7	P11075	2009 aa	Known RBP	3.86	□□□□□ -1.79
UBP1	YDL122W	APP1	P53933	587 aa		3.86	□□□□□ -1.79
UBP1	YDL122W	PDR11	P40550	1411 aa		3.86	□□□□□ -1.79
UBP1	YDL122W	VRP1	P37370	817 aa		3.85	□□□□□ -1.79
UBP1	YDL122W	PTP3	P40048	928 aa		3.85	□□□□□ -1.79
UBP1	YDL122W	UGA2	P38067	497 aa		3.83	□□□□□ -1.8
UBP1	YDL122W	RSM7	P47150	247 aa		3.83	□□□□□ -1.8
UBP1	YDL122W	CAT8	P39113	1433 aa		3.82	□□□□□ -1.8
UBP1	YDL122W	BBC1	P47068	1157 aa		3.8	□□□□□ -1.8
UBP1	YDL122W	YBL086C	P38177	466 aa		3.8	□□□□□ -1.8
UBP1	YDL122W	IMH1	Q06704	911 aa	Known RBP	3.79	□□□□□ -1.8
UBP1	YDL122W	YOL036W	Q08206	761 aa		3.79	□□□□□ -1.8
UBP1	YDL122W	SET4	P42948	560 aa		3.79	□□□□□ -1.8
UBP1	YDL122W	YDL129W	Q07555	291 aa		3.79	□□□□□ -1.8
UBP1	YDL122W	PDR5	P33302	1511 aa	Known RBP	3.78	□□□□□ -1.8
UBP1	YDL122W	AI2	P03876	854 aa		3.78	□□□□□ -1.8
UBP1	YDL122W	PIB1	Q06651	286 aa		3.78	□□□□□ -1.81
UBP1	YDL122W	GCN2	P15442	1659 aa		3.76	□□□□□ -1.81
UBP1	YDL122W	ALD2	P47771	506 aa		3.75	□□□□□ -1.81
UBP1	YDL122W	YLR271W	Q06152	274 aa		3.74	□□□□□ -1.81
UBP1	YDL122W	PEX21	P50091	288 aa		3.74	□□□□□ -1.81
UBP1	YDL122W	YPL062W	Q02781	134 aa		3.74	□□□□□ -1.81
UBP1	YDL122W	ENT1	Q12518	454 aa		3.74	□□□□□ -1.81
UBP1	YDL122W	SSA2	P10592	639 aa	Known RBP	3.72	□□□□□ -1.81
UBP1	YDL122W	IPL1	P38991	367 aa		3.72	□□□□□ -1.81
UBP1	YDL122W	DAN4	P47179	1161 aa		3.72	□□□□□ -1.81
UBP1	YDL122W	MAC1	P35192	417 aa		3.71	□□□□□ -1.82
UBP1	YDL122W	SSP1	P38871	571 aa		3.71	□□□□□ -1.82
UBP1	YDL122W	PSD2	P53037	1138 aa	Known RBP	3.71	□□□□□ -1.82
UBP1	YDL122W	GEA1	P47102	1408 aa	Predicted RBP	3.71	□□□□□ -1.82
UBP1	YDL122W	PUS5	Q06244	254 aa		3.71	□□□□□ -1.82
UBP1	YDL122W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	3.7	□□□□□ -1.82	not detected
UBP1	YDL122W	SDH2	P21801	266 aa		3.69	□□□□□ -1.82
UBP1	YDL122W	RRP5	Q05022	1729 aa	Known RBP	3.68	□□□□□ -1.82
UBP1	YDL122W	JIP4	Q03361	876 aa		3.68	□□□□□ -1.82
UBP1	YDL122W	SSA4	P22202	642 aa	Known RBP	3.68	□□□□□ -1.82
UBP1	YDL122W	LEU3	P08638	886 aa		3.66	□□□□□ -1.82
UBP1	YDL122W	POM152	P39685	1337 aa		3.66	□□□□□ -1.82
UBP1	YDL122W	RSF2	P46974	1380 aa		3.66	□□□□□ -1.82
UBP1	YDL122W	CFT1	Q06632	1357 aa	Known RBP	3.66	□□□□□ -1.82
UBP1	YDL122W	TAF7	Q05021	590 aa		3.65	□□□□□ -1.82
UBP1	YDL122W	DUS1	P53759	423 aa	Known RBP	3.65	□□□□□ -1.83
UBP1	YDL122W	SRB8	P25648	1427 aa		3.64	□□□□□ -1.83
UBP1	YDL122W	MRM1	P25270	412 aa		3.63	□□□□□ -1.83
UBP1	YDL122W	MGA2	P40578	1113 aa		3.63	□□□□□ -1.83
UBP1	YDL122W	RPN11	P43588	306 aa	Known RBP	3.63	□□□□□ -1.83
UBP1	YDL122W	CTH1	P47976	325 aa		3.63	□□□□□ -1.83
UBP1	YDL122W	SPT7	P35177	1332 aa		3.63	□□□□□ -1.83
UBP1	YDL122W	YJL181W	P46987	611 aa		3.63	□□□□□ -1.83
UBP1	YDL122W	ROM2	P51862	1356 aa	Known RBP	3.62	□□□□□ -1.83
UBP1	YDL122W	ELP4	Q02884	456 aa	Known RBP	3.61	□□□□□ -1.83
UBP1	YDL122W	URB1	P34241	1764 aa	Known RBP	3.61	□□□□□ -1.83
UBP1	YDL122W	SNF2	P22082	1703 aa		3.61	□□□□□ -1.83
UBP1	YDL122W	DMA1	P38823	416 aa		3.61	□□□□□ -1.83
UBP1	YDL122W	YNR029C	P53729	429 aa	Known RBP	3.61	□□□□□ -1.83
UBP1	YDL122W	YDR344C	Q05510	147 aa		3.61	□□□□□ -1.83
UBP1	YDL122W	PRP40	P33203	583 aa	Known RBP	3.6	□□□□□ -1.83
UBP1	YDL122W	YEF3	P16521	1044 aa	Known RBP	3.6	□□□□□ -1.83
UBP1	YDL122W	CST9	Q06032	482 aa		3.6	□□□□□ -1.83
UBP1	YDL122W	TYS1	P36421	394 aa	Known RBP	3.59	□□□□□ -1.84
UBP1	YDL122W	CKB1	P43639	278 aa		3.59	□□□□□ -1.84
UBP1	YDL122W	LYS4	P49367	693 aa	Predicted RBP	3.59	□□□□□ -1.84
UBP1	YDL122W	RTG3	P38165	486 aa		3.58	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms