RNA–Protein interactions for RNA: ENST00000641847.1

PHGDH-228, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 692 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-228ENST00000641847 ZMYM4Q5VZL5 1548 aa15.04■□□□□ -0
PHGDH-228ENST00000641847 UHRF1BP1Q6BDS2 1440 aa15.04■□□□□ -0
PHGDH-228ENST00000641847 RICTORQ6R327 1708 aa15.03■□□□□ -0
PHGDH-228ENST00000641847 SAMD9Q5K651 1589 aa15.03■□□□□ -0
PHGDH-228ENST00000641847 TTC37Q6PGP7 1564 aa15.03■□□□□ -0
PHGDH-228ENST00000641847 CLIP1P30622 1438 aa15.03■□□□□ -0
PHGDH-228ENST00000641847 RANGAP1P46060 587 aaPredicted RBP15.03■□□□□ -0
PHGDH-228ENST00000641847 CEBPAP49715 358 aaPredicted RBP15.02■□□□□ -0
PHGDH-228ENST00000641847 FER1L4A9Z1Z3 1794 aa15.01□□□□□ -0.01
PHGDH-228ENST00000641847 PREX1Q8TCU6 1659 aa15.01□□□□□ -0.01
PHGDH-228ENST00000641847 ESF1Q9H501 851 aaKnown RBP15□□□□□ -0.01
PHGDH-228ENST00000641847 ATP10AO60312 1499 aa15□□□□□ -0.01
PHGDH-228ENST00000641847 NUP153P49790 1475 aaKnown RBP15□□□□□ -0.01
PHGDH-228ENST00000641847 ARHGAP35Q9NRY4 1499 aa15□□□□□ -0.01
PHGDH-228ENST00000641847 PTPRTO14522 1441 aa15□□□□□ -0.01
PHGDH-228ENST00000641847 C9orf84Q5VXU9 1444 aa14.99□□□□□ -0.01
PHGDH-228ENST00000641847 SCAPERQ9BY12 1400 aa14.99□□□□□ -0.01
PHGDH-228ENST00000641847 ARHGEF12Q9NZN5 1544 aa14.97□□□□□ -0.01
PHGDH-228ENST00000641847 MYT1LQ9UL68 1186 aa14.97□□□□□ -0.01
PHGDH-228ENST00000641847 IQSEC2Q5JU85 1478 aa14.96□□□□□ -0.01
PHGDH-228ENST00000641847 HECW1Q76N89 1606 aa14.96□□□□□ -0.01
PHGDH-228ENST00000641847 EFCAB2Q5VUJ9 269 aa14.95□□□□□ -0.02
PHGDH-228ENST00000641847 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.95□□□□□ -0.02
PHGDH-228ENST00000641847 STRCQ7RTU9 1775 aa14.93□□□□□ -0.02
PHGDH-228ENST00000641847 SETD1BQ9UPS6 1966 aaKnown RBP14.93□□□□□ -0.02
PHGDH-228ENST00000641847 PLCH2O75038 1416 aa14.92□□□□□ -0.02
PHGDH-228ENST00000641847 UBAP1LF5GYI3 381 aa14.92□□□□□ -0.02
PHGDH-228ENST00000641847 SIGLEC1Q9BZZ2 1709 aa14.91□□□□□ -0.02
PHGDH-228ENST00000641847 CDK11AQ9UQ88 783 aaPredicted RBP14.89□□□□□ -0.03
PHGDH-228ENST00000641847 TRAPPC8Q9Y2L5 1435 aa14.89□□□□□ -0.03
PHGDH-228ENST00000641847 ZNF518AQ6AHZ1 1483 aa14.89□□□□□ -0.03
PHGDH-228ENST00000641847 LTBP4Q8N2S1 1624 aa14.87□□□□□ -0.03
PHGDH-228ENST00000641847 VPS8Q8N3P4 1428 aa14.86□□□□□ -0.03
PHGDH-228ENST00000641847 NCOA1Q15788 1441 aa14.85□□□□□ -0.03
PHGDH-228ENST00000641847 FMN1Q68DA7 1419 aa14.85□□□□□ -0.03
PHGDH-228ENST00000641847 AFAP1Q8N556 730 aa14.85□□□□□ -0.03
PHGDH-228ENST00000641847 ATP1B4Q9UN42 357 aaPredicted RBP14.85□□□□□ -0.03
PHGDH-228ENST00000641847 CNTLNQ9NXG0 1405 aa14.83□□□□□ -0.04
PHGDH-228ENST00000641847 PKD2Q13563 968 aa14.8□□□□□ -0.04
PHGDH-228ENST00000641847 SCAF1Q9H7N4 1312 aaKnown RBP14.8□□□□□ -0.04
PHGDH-228ENST00000641847 FYCO1Q9BQS8 1478 aa14.8□□□□□ -0.04
PHGDH-228ENST00000641847 ZNF335Q9H4Z2 1342 aaPredicted RBP14.79□□□□□ -0.04
PHGDH-228ENST00000641847 ARHGAP5Q13017 1502 aa14.78□□□□□ -0.04
PHGDH-228ENST00000641847 CASKIN1Q8WXD9 1431 aa14.78□□□□□ -0.04
PHGDH-228ENST00000641847 PHF23Q9BUL5 403 aaPredicted RBP14.78□□□□□ -0.04
PHGDH-228ENST00000641847 REREQ9P2R6 1566 aa14.77□□□□□ -0.04
PHGDH-228ENST00000641847 CDK13Q14004 1512 aaKnown RBP14.77□□□□□ -0.04
PHGDH-228ENST00000641847 NCKAP5LQ9HCH0 1330 aa14.77□□□□□ -0.04
PHGDH-228ENST00000641847 C3P01024 1663 aa14.77□□□□□ -0.05
PHGDH-228ENST00000641847 KDM5CP41229 1560 aa14.77□□□□□ -0.05
PHGDH-228ENST00000641847 AGLP35573 1532 aa14.76□□□□□ -0.05
PHGDH-228ENST00000641847 MLH3Q9UHC1 1453 aa14.76□□□□□ -0.05
PHGDH-228ENST00000641847 NPATQ14207 1427 aa14.76□□□□□ -0.05
PHGDH-228ENST00000641847 MYO5CQ9NQX4 1742 aa14.76□□□□□ -0.05
PHGDH-228ENST00000641847 TOM1O60784 492 aa14.76□□□□□ -0.05
PHGDH-228ENST00000641847 CAMSAP1Q5T5Y3 1602 aa14.76□□□□□ -0.05
PHGDH-228ENST00000641847 LRRIQ1Q96JM4 1722 aa14.75□□□□□ -0.05
PHGDH-228ENST00000641847 DIP2CQ9Y2E4 1556 aa14.74□□□□□ -0.05
PHGDH-228ENST00000641847 HSPA1LP34931 641 aa14.74□□□□□ -0.05
PHGDH-228ENST00000641847 PIP4K2BP78356 416 aa14.74□□□□□ -0.05
PHGDH-228ENST00000641847 PPP6R1Q9UPN7 881 aa14.73□□□□□ -0.05
PHGDH-228ENST00000641847 KIF14Q15058 1648 aa14.72□□□□□ -0.05
PHGDH-228ENST00000641847 ZMYM3Q14202 1370 aa14.72□□□□□ -0.05
PHGDH-228ENST00000641847 CCDC18Q5T9S5 1454 aa14.7□□□□□ -0.06
PHGDH-228ENST00000641847 TROQ12816 1431 aaPredicted RBP14.7□□□□□ -0.06
PHGDH-228ENST00000641847 PLA2R1Q13018 1463 aa14.69□□□□□ -0.06
PHGDH-228ENST00000641847 TIAM1Q13009 1591 aa14.69□□□□□ -0.06
PHGDH-228ENST00000641847 MED1Q15648 1581 aaPredicted RBP14.68□□□□□ -0.06
PHGDH-228ENST00000641847 ABCA6Q8N139 1617 aa14.68□□□□□ -0.06
PHGDH-228ENST00000641847 MAP3K1Q13233 1512 aa14.66□□□□□ -0.06
PHGDH-228ENST00000641847 TCOF1Q13428 1488 aaKnown RBP14.64□□□□□ -0.07
PHGDH-228ENST00000641847 APLP2Q06481 763 aa14.64□□□□□ -0.07
PHGDH-228ENST00000641847 SPAG9O60271 1321 aaKnown RBP14.64□□□□□ -0.07
PHGDH-228ENST00000641847 MROH2AA6NES4 1674 aa14.63□□□□□ -0.07
PHGDH-228ENST00000641847 PTPRKQ15262 1439 aa14.62□□□□□ -0.07
PHGDH-228ENST00000641847 CPS1P31327 1500 aa14.61□□□□□ -0.07
PHGDH-228ENST00000641847 ABCC1P33527 1531 aa14.61□□□□□ -0.07
PHGDH-228ENST00000641847 GGT6Q6P531 493 aa14.61□□□□□ -0.07
PHGDH-228ENST00000641847 ZNF777Q9ULD5 760 aaPredicted RBP14.61□□□□□ -0.07
PHGDH-228ENST00000641847 EHBP1L1Q8N3D4 1523 aa14.61□□□□□ -0.07
PHGDH-228ENST00000641847 CEP170BQ9Y4F5 1589 aaPredicted RBP14.6□□□□□ -0.07
PHGDH-228ENST00000641847 LRRC9Q6ZRR7 1453 aa14.6□□□□□ -0.07
PHGDH-228ENST00000641847 MYO3AQ8NEV4 1616 aa14.58□□□□□ -0.08
PHGDH-228ENST00000641847 SHANK2Q9UPX8 1470 aa14.57□□□□□ -0.08
PHGDH-228ENST00000641847 ZNF142P52746 1687 aaPredicted RBP14.57□□□□□ -0.08
PHGDH-228ENST00000641847 KIDINS220Q9ULH0 1771 aa14.57□□□□□ -0.08
PHGDH-228ENST00000641847 SUPT6HQ7KZ85 1726 aaKnown RBP14.56□□□□□ -0.08
PHGDH-228ENST00000641847 ANKLE2Q86XL3 938 aa14.56□□□□□ -0.08
PHGDH-228ENST00000641847 MTUS2Q5JR59 1369 aa14.56□□□□□ -0.08
PHGDH-228ENST00000641847 A2ML1A8K2U0 1454 aa14.56□□□□□ -0.08
PHGDH-228ENST00000641847 PREX2Q70Z35 1606 aa14.55□□□□□ -0.08
PHGDH-228ENST00000641847 ITSN2Q9NZM3 1697 aa14.55□□□□□ -0.08
PHGDH-228ENST00000641847 CDC42BPBQ9Y5S2 1711 aa14.55□□□□□ -0.08
PHGDH-228ENST00000641847 KANK4Q5T7N3 995 aaPredicted RBP14.55□□□□□ -0.08
PHGDH-228ENST00000641847 HNRNPMP52272 730 aaKnown RBP eCLIP14.54□□□□□ -0.08
PHGDH-228ENST00000641847 PPARGC1BQ86YN6 1023 aaKnown RBP14.54□□□□□ -0.08
PHGDH-228ENST00000641847 SAMD9LQ8IVG5 1584 aa14.54□□□□□ -0.08
PHGDH-228ENST00000641847 CLTCQ00610 1675 aaKnown RBP14.53□□□□□ -0.08
PHGDH-228ENST00000641847 A2MP01023 1474 aa14.53□□□□□ -0.08
PHGDH-228ENST00000641847 THEMISQ8N1K5 641 aaPredicted RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms