RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 CFAP74Q9C0B2 1584 aa12.84□□□□□ -0.35
PNKP-229ENST00000637897 CDC42BPBQ9Y5S2 1711 aa12.84□□□□□ -0.35
PNKP-229ENST00000637897 MYO5CQ9NQX4 1742 aa12.83□□□□□ -0.36
PNKP-229ENST00000637897 HECW2Q9P2P5 1572 aa12.83□□□□□ -0.36
PNKP-229ENST00000637897 PTPRMP28827 1452 aa12.82□□□□□ -0.36
PNKP-229ENST00000637897 MADDQ8WXG6 1647 aa12.81□□□□□ -0.36
PNKP-229ENST00000637897 FYCO1Q9BQS8 1478 aa12.81□□□□□ -0.36
PNKP-229ENST00000637897 CCDC18Q5T9S5 1454 aa12.8□□□□□ -0.36
PNKP-229ENST00000637897 ZFYVE16Q7Z3T8 1539 aa12.8□□□□□ -0.36
PNKP-229ENST00000637897 EFCAB2Q5VUJ9 269 aa12.8□□□□□ -0.36
PNKP-229ENST00000637897 CDK11AQ9UQ88 783 aaPredicted RBP12.8□□□□□ -0.36
PNKP-229ENST00000637897 KDM5CP41229 1560 aa12.79□□□□□ -0.36
PNKP-229ENST00000637897 AFAP1Q8N556 730 aa12.79□□□□□ -0.36
PNKP-229ENST00000637897 TRAPPC8Q9Y2L5 1435 aa12.79□□□□□ -0.36
PNKP-229ENST00000637897 MAGI2Q86UL8 1455 aa12.78□□□□□ -0.36
PNKP-229ENST00000637897 PREX2Q70Z35 1606 aa12.78□□□□□ -0.36
PNKP-229ENST00000637897 LOC105371045A0A1W2PR82 267 aa12.78□□□□□ -0.36
PNKP-229ENST00000637897 CDC42BPAQ5VT25 1732 aa12.78□□□□□ -0.36
PNKP-229ENST00000637897 ARHGAP5Q13017 1502 aa12.78□□□□□ -0.36
PNKP-229ENST00000637897 GPATCH8Q9UKJ3 1502 aaKnown RBP12.77□□□□□ -0.37
PNKP-229ENST00000637897 CEP162Q5TB80 1403 aa12.76□□□□□ -0.37
PNKP-229ENST00000637897 ABCC1P33527 1531 aa12.76□□□□□ -0.37
PNKP-229ENST00000637897 RIMS1Q86UR5 1692 aaKnown RBP12.74□□□□□ -0.37
PNKP-229ENST00000637897 ATP10AO60312 1499 aa12.74□□□□□ -0.37
PNKP-229ENST00000637897 ARID4BQ4LE39 1312 aaPredicted RBP12.74□□□□□ -0.37
PNKP-229ENST00000637897 SAMD9LQ8IVG5 1584 aa12.73□□□□□ -0.37
PNKP-229ENST00000637897 DIP2CQ9Y2E4 1556 aa12.73□□□□□ -0.37
PNKP-229ENST00000637897 ZNF518AQ6AHZ1 1483 aa12.73□□□□□ -0.37
PNKP-229ENST00000637897 ITSN2Q9NZM3 1697 aa12.73□□□□□ -0.37
PNKP-229ENST00000637897 ABCA6Q8N139 1617 aa12.73□□□□□ -0.37
PNKP-229ENST00000637897 LMTK3Q96Q04 1460 aa12.72□□□□□ -0.37
PNKP-229ENST00000637897 MLH3Q9UHC1 1453 aa12.72□□□□□ -0.37
PNKP-229ENST00000637897 C9orf84Q5VXU9 1444 aa12.71□□□□□ -0.37
PNKP-229ENST00000637897 KIDINS220Q9ULH0 1771 aa12.71□□□□□ -0.38
PNKP-229ENST00000637897 MLECQ14165 292 aa12.7□□□□□ -0.38
PNKP-229ENST00000637897 REREQ9P2R6 1566 aa12.69□□□□□ -0.38
PNKP-229ENST00000637897 SYCP2Q9BX26 1530 aa12.68□□□□□ -0.38
PNKP-229ENST00000637897 ZNF644Q9H582 1327 aaPredicted RBP12.68□□□□□ -0.38
PNKP-229ENST00000637897 HNRNPMP52272 730 aaKnown RBP eCLIP12.68□□□□□ -0.38
PNKP-229ENST00000637897 TIAM1Q13009 1591 aa12.68□□□□□ -0.38
PNKP-229ENST00000637897 FER1L4A9Z1Z3 1794 aa12.66□□□□□ -0.38
PNKP-229ENST00000637897 CEBPAP49715 358 aaPredicted RBP12.66□□□□□ -0.38
PNKP-229ENST00000637897 FBXO41Q8TF61 875 aa12.66□□□□□ -0.38
PNKP-229ENST00000637897 MBD5Q9P267 1494 aa12.65□□□□□ -0.38
PNKP-229ENST00000637897 KIAA1107Q9UPP5 1409 aa12.65□□□□□ -0.38
PNKP-229ENST00000637897 ZNF777Q9ULD5 760 aaPredicted RBP12.65□□□□□ -0.38
PNKP-229ENST00000637897 AGLP35573 1532 aa12.65□□□□□ -0.38
PNKP-229ENST00000637897 EHBP1L1Q8N3D4 1523 aa12.64□□□□□ -0.39
PNKP-229ENST00000637897 MTUS2Q5JR59 1369 aa12.64□□□□□ -0.39
PNKP-229ENST00000637897 HSPA2P54652 639 aa12.63□□□□□ -0.39
PNKP-229ENST00000637897 PLPPR3Q6T4P5 718 aa12.63□□□□□ -0.39
PNKP-229ENST00000637897 CFDP1Q9UEE9 299 aaPredicted RBP12.63□□□□□ -0.39
PNKP-229ENST00000637897 CCNB3Q8WWL7 1395 aa12.63□□□□□ -0.39
PNKP-229ENST00000637897 INO80Q9ULG1 1556 aaPredicted RBP12.62□□□□□ -0.39
PNKP-229ENST00000637897 KANK4Q5T7N3 995 aaPredicted RBP12.62□□□□□ -0.39
PNKP-229ENST00000637897 VPS8Q8N3P4 1428 aa12.62□□□□□ -0.39
PNKP-229ENST00000637897 NCOA2Q15596 1464 aa12.61□□□□□ -0.39
PNKP-229ENST00000637897 PLXNC1O60486 1568 aa12.6□□□□□ -0.39
PNKP-229ENST00000637897 ATP7AQ04656 1500 aa12.59□□□□□ -0.39
PNKP-229ENST00000637897 SPAG9O60271 1321 aaKnown RBP12.59□□□□□ -0.39
PNKP-229ENST00000637897 LRRC9Q6ZRR7 1453 aa12.58□□□□□ -0.4
PNKP-229ENST00000637897 C3P01024 1663 aa12.57□□□□□ -0.4
PNKP-229ENST00000637897 MYT1LQ9UL68 1186 aa12.57□□□□□ -0.4
PNKP-229ENST00000637897 PLEKHH2Q8IVE3 1493 aa12.57□□□□□ -0.4
PNKP-229ENST00000637897 A2MP01023 1474 aa12.55□□□□□ -0.4
PNKP-229ENST00000637897 SUPT6HQ7KZ85 1726 aaKnown RBP12.55□□□□□ -0.4
PNKP-229ENST00000637897 CAMSAP2Q08AD1 1489 aa12.54□□□□□ -0.4
PNKP-229ENST00000637897 STRCQ7RTU9 1775 aa12.53□□□□□ -0.4
PNKP-229ENST00000637897 MAP3K1Q13233 1512 aa12.53□□□□□ -0.4
PNKP-229ENST00000637897 SETD1BQ9UPS6 1966 aaKnown RBP12.53□□□□□ -0.4
PNKP-229ENST00000637897 PREX1Q8TCU6 1659 aa12.53□□□□□ -0.4
PNKP-229ENST00000637897 RTEL1-TNFRSF6BF6WH68 1400 aa12.53□□□□□ -0.4
PNKP-229ENST00000637897 ADGBQ8N7X0 1667 aa12.52□□□□□ -0.4
PNKP-229ENST00000637897 ZMYM3Q14202 1370 aa12.51□□□□□ -0.41
PNKP-229ENST00000637897 SOCS7O14512 581 aa12.5□□□□□ -0.41
PNKP-229ENST00000637897 CCDC141Q6ZP82 1450 aa12.5□□□□□ -0.41
PNKP-229ENST00000637897 ARHGEF5Q12774 1597 aa12.49□□□□□ -0.41
PNKP-229ENST00000637897 DHX29Q7Z478 1369 aaKnown RBP12.49□□□□□ -0.41
PNKP-229ENST00000637897 MROH2AA6NES4 1674 aa12.48□□□□□ -0.41
PNKP-229ENST00000637897 CLTCQ00610 1675 aaKnown RBP12.48□□□□□ -0.41
PNKP-229ENST00000637897 PTPRKQ15262 1439 aa12.48□□□□□ -0.41
PNKP-229ENST00000637897 CNTLNQ9NXG0 1405 aa12.48□□□□□ -0.41
PNKP-229ENST00000637897 ILDR2Q71H61 639 aa12.48□□□□□ -0.41
PNKP-229ENST00000637897 UHRF1BP1Q6BDS2 1440 aa12.47□□□□□ -0.41
PNKP-229ENST00000637897 GGT6Q6P531 493 aa12.47□□□□□ -0.41
PNKP-229ENST00000637897 NPATQ14207 1427 aa12.45□□□□□ -0.42
PNKP-229ENST00000637897 MYOM3Q5VTT5 1437 aa12.45□□□□□ -0.42
PNKP-229ENST00000637897 MAST1Q9Y2H9 1570 aa12.44□□□□□ -0.42
PNKP-229ENST00000637897 MIA2Q96PC5 1412 aa12.44□□□□□ -0.42
PNKP-229ENST00000637897 RSPH4AQ5TD94 716 aa12.43□□□□□ -0.42
PNKP-229ENST00000637897 NCOA1Q15788 1441 aa12.43□□□□□ -0.42
PNKP-229ENST00000637897 MROH1Q8NDA8 1641 aa12.42□□□□□ -0.42
PNKP-229ENST00000637897 KIF3BO15066 747 aa12.42□□□□□ -0.42
PNKP-229ENST00000637897 FBXO31Q5XUX0 539 aaPredicted RBP12.42□□□□□ -0.42
PNKP-229ENST00000637897 ABCC5O15440 1437 aa12.42□□□□□ -0.42
PNKP-229ENST00000637897 MYO3AQ8NEV4 1616 aa12.4□□□□□ -0.42
PNKP-229ENST00000637897 ESF1Q9H501 851 aaKnown RBP12.4□□□□□ -0.42
PNKP-229ENST00000637897 PPP6R1Q9UPN7 881 aa12.4□□□□□ -0.42
PNKP-229ENST00000637897 ZNF142P52746 1687 aaPredicted RBP12.39□□□□□ -0.43
PNKP-229ENST00000637897 PTPRTO14522 1441 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms