RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 ABCA9Q8IUA7 1624 aa28.68■■■□□ 2.18
CLN3-258ENST00000637184 ZNF644Q9H582 1327 aaPredicted RBP28.68■■■□□ 2.18
CLN3-258ENST00000637184 CAMSAP2Q08AD1 1489 aa28.67■■■□□ 2.18
CLN3-258ENST00000637184 PLCH2O75038 1416 aa28.66■■■□□ 2.18
CLN3-258ENST00000637184 ARHGAP5Q13017 1502 aa28.65■■■□□ 2.18
CLN3-258ENST00000637184 DNAJC5Q9H3Z4 198 aa28.62■■■□□ 2.17
CLN3-258ENST00000637184 ARAP3Q8WWN8 1544 aa28.59■■■□□ 2.17
CLN3-258ENST00000637184 EFCAB2Q5VUJ9 269 aa28.57■■■□□ 2.16
CLN3-258ENST00000637184 SAMD9LQ8IVG5 1584 aa28.57■■■□□ 2.16
CLN3-258ENST00000637184 DNMT1P26358 1616 aaKnown RBP28.57■■■□□ 2.16
CLN3-258ENST00000637184 PTPRKQ15262 1439 aa28.56■■■□□ 2.16
CLN3-258ENST00000637184 DAPK1P53355 1430 aa28.55■■■□□ 2.16
CLN3-258ENST00000637184 ABCC5O15440 1437 aa28.52■■■□□ 2.16
CLN3-258ENST00000637184 CD109Q6YHK3 1445 aa28.52■■■□□ 2.16
CLN3-258ENST00000637184 PLEKHH2Q8IVE3 1493 aa28.52■■■□□ 2.16
CLN3-258ENST00000637184 GLI2P10070 1586 aa28.5■■■□□ 2.15
CLN3-258ENST00000637184 HNRNPMP52272 730 aaKnown RBP eCLIP28.49■■■□□ 2.15
CLN3-258ENST00000637184 FANCAO15360 1455 aa28.49■■■□□ 2.15
CLN3-258ENST00000637184 DIP2BQ9P265 1576 aa28.48■■■□□ 2.15
CLN3-258ENST00000637184 KIAA1107Q9UPP5 1409 aa28.48■■■□□ 2.15
CLN3-258ENST00000637184 ARHGEF5Q12774 1597 aa28.48■■■□□ 2.15
CLN3-258ENST00000637184 CHIC2Q9UKJ5 165 aa28.47■■■□□ 2.15
CLN3-258ENST00000637184 SYCP2Q9BX26 1530 aa28.47■■■□□ 2.15
CLN3-258ENST00000637184 MBD5Q9P267 1494 aa28.46■■■□□ 2.15
CLN3-258ENST00000637184 CROCC2H7BZ55 1655 aa28.46■■■□□ 2.15
CLN3-258ENST00000637184 RSPH4AQ5TD94 716 aa28.45■■■□□ 2.15
CLN3-258ENST00000637184 MAP3K4Q9Y6R4 1608 aa28.45■■■□□ 2.14
CLN3-258ENST00000637184 FAM69CQ0P6D2 419 aa28.45■■■□□ 2.14
CLN3-258ENST00000637184 ABCC1P33527 1531 aa28.44■■■□□ 2.14
CLN3-258ENST00000637184 SETD5Q9C0A6 1442 aa28.43■■■□□ 2.14
CLN3-258ENST00000637184 CCDC141Q6ZP82 1450 aa28.42■■■□□ 2.14
CLN3-258ENST00000637184 AKNAQ7Z591 1439 aa28.41■■■□□ 2.14
CLN3-258ENST00000637184 HFM1A2PYH4 1435 aa28.41■■■□□ 2.14
CLN3-258ENST00000637184 CFAP74Q9C0B2 1584 aa28.41■■■□□ 2.14
CLN3-258ENST00000637184 TSPY4P0CV99 314 aa28.4■■■□□ 2.14
CLN3-258ENST00000637184 TSPY10P0CW01 314 aa28.4■■■□□ 2.14
CLN3-258ENST00000637184 ROCK1Q13464 1354 aa28.39■■■□□ 2.14
CLN3-258ENST00000637184 SHANK2Q9UPX8 1470 aa28.39■■■□□ 2.14
CLN3-258ENST00000637184 ARHGEF12Q9NZN5 1544 aa28.39■■■□□ 2.14
CLN3-258ENST00000637184 ADGBQ8N7X0 1667 aa28.38■■■□□ 2.13
CLN3-258ENST00000637184 RAB3GAP2Q9H2M9 1393 aa28.37■■■□□ 2.13
CLN3-258ENST00000637184 RRP7BPQ9NSQ0 103 aa28.37■■■□□ 2.13
CLN3-258ENST00000637184 ADGRL1O94910 1474 aa28.36■■■□□ 2.13
CLN3-258ENST00000637184 NAIPQ13075 1403 aa28.36■■■□□ 2.13
CLN3-258ENST00000637184 C9orf84Q5VXU9 1444 aa28.36■■■□□ 2.13
CLN3-258ENST00000637184 KIF13AQ9H1H9 1805 aa28.34■■■□□ 2.13
CLN3-258ENST00000637184 ADGRL2O95490 1459 aa28.34■■■□□ 2.13
CLN3-258ENST00000637184 GCC2Q8IWJ2 1684 aa28.33■■■□□ 2.13
CLN3-258ENST00000637184 NEO1Q92859 1461 aa28.33■■■□□ 2.13
CLN3-258ENST00000637184 ANKRD30AQ9BXX3 1397 aa28.32■■■□□ 2.12
CLN3-258ENST00000637184 SCAPERQ9BY12 1400 aa28.32■■■□□ 2.12
CLN3-258ENST00000637184 NCOA1Q15788 1441 aa28.31■■■□□ 2.12
CLN3-258ENST00000637184 TRAPPC8Q9Y2L5 1435 aa28.31■■■□□ 2.12
CLN3-258ENST00000637184 HRCP23327 699 aa28.29■■■□□ 2.12
CLN3-258ENST00000637184 MAST1Q9Y2H9 1570 aa28.29■■■□□ 2.12
CLN3-258ENST00000637184 TSPOAP1O95153 1857 aa28.29■■■□□ 2.12
CLN3-258ENST00000637184 CCER1Q8TC90 406 aaPredicted RBP28.27■■■□□ 2.12
CLN3-258ENST00000637184 AFAP1Q8N556 730 aa28.25■■■□□ 2.11
CLN3-258ENST00000637184 TEX14Q8IWB6 1497 aa28.23■■■□□ 2.11
CLN3-258ENST00000637184 PPRC1Q5VV67 1664 aaKnown RBP28.23■■■□□ 2.11
CLN3-258ENST00000637184 SPAG9O60271 1321 aaKnown RBP28.21■■■□□ 2.11
CLN3-258ENST00000637184 ZNF518AQ6AHZ1 1483 aa28.2■■■□□ 2.11
CLN3-258ENST00000637184 KIF15Q9NS87 1388 aa28.19■■■□□ 2.1
CLN3-258ENST00000637184 PLXNC1O60486 1568 aa28.18■■■□□ 2.1
CLN3-258ENST00000637184 RTEL1-TNFRSF6BF6WH68 1400 aa28.18■■■□□ 2.1
CLN3-258ENST00000637184 POGZQ7Z3K3 1410 aa28.18■■■□□ 2.1
CLN3-258ENST00000637184 KDM6BO15054 1643 aa28.17■■■□□ 2.1
CLN3-258ENST00000637184 DENND4BO75064 1496 aaPredicted RBP28.16■■■□□ 2.1
CLN3-258ENST00000637184 ZFYVE16Q7Z3T8 1539 aa28.15■■■□□ 2.1
CLN3-258ENST00000637184 ANKRD50Q9ULJ7 1429 aa28.14■■■□□ 2.1
CLN3-258ENST00000637184 DHX57Q6P158 1386 aaKnown RBP28.14■■■□□ 2.1
CLN3-258ENST00000637184 ACIN1Q9UKV3 1341 aaKnown RBP28.13■■■□□ 2.09
CLN3-258ENST00000637184 INO80Q9ULG1 1556 aaPredicted RBP28.13■■■□□ 2.09
CLN3-258ENST00000637184 ATP7AQ04656 1500 aa28.12■■■□□ 2.09
CLN3-258ENST00000637184 KDM5CP41229 1560 aa28.12■■■□□ 2.09
CLN3-258ENST00000637184 MYT1LQ9UL68 1186 aa28.11■■■□□ 2.09
CLN3-258ENST00000637184 TRHP20396 242 aaPredicted RBP28.09■■■□□ 2.09
CLN3-258ENST00000637184 RAPGEF3O95398 923 aa28.09■■■□□ 2.09
CLN3-258ENST00000637184 DUOX2Q9NRD8 1548 aa28.08■■■□□ 2.09
CLN3-258ENST00000637184 RICTORQ6R327 1708 aa28.08■■■□□ 2.09
CLN3-258ENST00000637184 TRIM52Q96A61 297 aa28.07■■■□□ 2.08
CLN3-258ENST00000637184 MLH3Q9UHC1 1453 aa28.06■■■□□ 2.08
CLN3-258ENST00000637184 KIDINS220Q9ULH0 1771 aa28.06■■■□□ 2.08
CLN3-258ENST00000637184 HECW2Q9P2P5 1572 aa28.05■■■□□ 2.08
CLN3-258ENST00000637184 ERBINQ96RT1 1412 aa28.02■■■□□ 2.08
CLN3-258ENST00000637184 FRMPD1Q5SYB0 1578 aa28■■■□□ 2.07
CLN3-258ENST00000637184 CLSPNQ9HAW4 1339 aa27.99■■■□□ 2.07
CLN3-258ENST00000637184 ZEB1P37275 1124 aaPredicted RBP27.99■■■□□ 2.07
CLN3-258ENST00000637184 ZMYM4Q5VZL5 1548 aa27.95■■■□□ 2.06
CLN3-258ENST00000637184 DHX29Q7Z478 1369 aaKnown RBP27.93■■■□□ 2.06
CLN3-258ENST00000637184 ABCA6Q8N139 1617 aa27.93■■■□□ 2.06
CLN3-258ENST00000637184 MPHOSPH9Q99550 1183 aa27.92■■■□□ 2.06
CLN3-258ENST00000637184 A2MP01023 1474 aa27.91■■■□□ 2.06
CLN3-258ENST00000637184 COL17A1Q9UMD9 1497 aaPredicted RBP27.91■■■□□ 2.06
CLN3-258ENST00000637184 NUP155O75694 1391 aa27.91■■■□□ 2.06
CLN3-258ENST00000637184 MAGI2Q86UL8 1455 aa27.9■■■□□ 2.06
CLN3-258ENST00000637184 UNC13BO14795 1591 aa27.89■■■□□ 2.06
CLN3-258ENST00000637184 SLC4A1APQ9BWU0 796 aaKnown RBP27.88■■■□□ 2.05
CLN3-258ENST00000637184 KDM5DQ9BY66 1539 aa27.88■■■□□ 2.05
CLN3-258ENST00000637184 DIP2CQ9Y2E4 1556 aa27.88■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 295.3 ms