RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 NISCHQ9Y2I1 1504 aa43.96■■■■■ 4.63
CLN3-258ENST00000637184 CCDC180Q9P1Z9 1646 aa38.56■■■■□ 3.76
CLN3-258ENST00000637184 ZCCHC6Q5VYS8 1495 aaKnown RBP36.84■■■■□ 3.49
CLN3-258ENST00000637184 ABCC9O60706 1549 aa36.77■■■■□ 3.48
CLN3-258ENST00000637184 DCAF8L2P0C7V8 631 aa36.44■■■■□ 3.42
CLN3-258ENST00000637184 DCAF1Q9Y4B6 1507 aa36.37■■■■□ 3.41
CLN3-258ENST00000637184 MYO15BQ96JP2 1530 aa36.11■■■■□ 3.37
CLN3-258ENST00000637184 NACADO15069 1562 aa36.01■■■■□ 3.35
CLN3-258ENST00000637184 RB1CC1Q8TDY2 1594 aa35.8■■■■□ 3.32
CLN3-258ENST00000637184 SHROOM4Q9ULL8 1493 aa35.53■■■■□ 3.28
CLN3-258ENST00000637184 SCRIBQ14160 1630 aa35.36■■■■□ 3.25
CLN3-258ENST00000637184 UNC13AQ9UPW8 1703 aa35.04■■■■□ 3.2
CLN3-258ENST00000637184 BICRAQ9NZM4 1560 aa34.68■■■■□ 3.14
CLN3-258ENST00000637184 PABPN1Q86U42 306 aaKnown RBP eCLIP34.59■■■■□ 3.13
CLN3-258ENST00000637184 CECR2Q9BXF3 1484 aa34.16■■■■□ 3.06
CLN3-258ENST00000637184 SUPT5HO00267 1087 aaKnown RBP34.01■■■■□ 3.04
CLN3-258ENST00000637184 BAZ1AQ9NRL2 1556 aaPredicted RBP34■■■■□ 3.03
CLN3-258ENST00000637184 RSF1Q96T23 1441 aaPredicted RBP33.93■■■■□ 3.02
CLN3-258ENST00000637184 MROH2BQ7Z745 1585 aa33.93■■■■□ 3.02
CLN3-258ENST00000637184 SMARCA4P51532 1647 aa33.88■■■■□ 3.01
CLN3-258ENST00000637184 EIF4G1Q04637 1599 aaKnown RBP33.69■■■□□ 2.98
CLN3-258ENST00000637184 WIZO95785 1651 aa33.64■■■□□ 2.98
CLN3-258ENST00000637184 PEG3Q9GZU2 1588 aa33.49■■■□□ 2.95
CLN3-258ENST00000637184 SMARCA2P51531 1590 aa33.43■■■□□ 2.94
CLN3-258ENST00000637184 ATAD2BQ9ULI0 1458 aa33.42■■■□□ 2.94
CLN3-258ENST00000637184 TOP2AP11388 1531 aaKnown RBP33.29■■■□□ 2.92
CLN3-258ENST00000637184 CC2D2AQ9P2K1 1620 aa33.29■■■□□ 2.92
CLN3-258ENST00000637184 BAZ1BQ9UIG0 1483 aaKnown RBP33.23■■■□□ 2.91
CLN3-258ENST00000637184 NCAPD3P42695 1498 aa33.21■■■□□ 2.91
CLN3-258ENST00000637184 HMGXB3Q12766 1538 aa33.14■■■□□ 2.9
CLN3-258ENST00000637184 CCDC88BA6NC98 1476 aa32.93■■■□□ 2.86
CLN3-258ENST00000637184 DNAJC5BQ9UF47 199 aa32.76■■■□□ 2.84
CLN3-258ENST00000637184 CFTRP13569 1480 aa32.36■■■□□ 2.77
CLN3-258ENST00000637184 CADPSQ9ULU8 1353 aa32.34■■■□□ 2.77
CLN3-258ENST00000637184 CHIC1Q5VXU3 224 aa32.33■■■□□ 2.77
CLN3-258ENST00000637184 PRDM2Q13029 1718 aa32.21■■■□□ 2.75
CLN3-258ENST00000637184 LAMC3Q9Y6N6 1575 aa32.18■■■□□ 2.74
CLN3-258ENST00000637184 NESP48681 1621 aa32.15■■■□□ 2.74
CLN3-258ENST00000637184 ABCC8Q09428 1581 aa32.1■■■□□ 2.73
CLN3-258ENST00000637184 TRIM41Q8WV44 630 aa32.04■■■□□ 2.72
CLN3-258ENST00000637184 FANCD2Q9BXW9 1451 aa31.98■■■□□ 2.71
CLN3-258ENST00000637184 WRNQ14191 1432 aaPredicted RBP eCLIP31.97■■■□□ 2.71
CLN3-258ENST00000637184 PDS5BQ9NTI5 1447 aa31.94■■■□□ 2.7
CLN3-258ENST00000637184 SYNJ1O43426 1573 aa31.83■■■□□ 2.69
CLN3-258ENST00000637184 CEP164Q9UPV0 1460 aa31.83■■■□□ 2.69
CLN3-258ENST00000637184 KIF21AQ7Z4S6 1674 aa31.79■■■□□ 2.68
CLN3-258ENST00000637184 TOP2BQ02880 1626 aa31.76■■■□□ 2.68
CLN3-258ENST00000637184 CUX1P39880 1505 aa31.76■■■□□ 2.67
CLN3-258ENST00000637184 BIVM-ERCC5R4GMW8 1640 aa31.74■■■□□ 2.67
CLN3-258ENST00000637184 DNMBPQ6XZF7 1577 aa31.63■■■□□ 2.65
CLN3-258ENST00000637184 ERCC6Q03468 1493 aa31.62■■■□□ 2.65
CLN3-258ENST00000637184 TOPBP1Q92547 1522 aa31.58■■■□□ 2.65
CLN3-258ENST00000637184 URB2Q14146 1524 aaKnown RBP31.58■■■□□ 2.65
CLN3-258ENST00000637184 MRC2Q9UBG0 1479 aa31.54■■■□□ 2.64
CLN3-258ENST00000637184 FGD5Q6ZNL6 1462 aa31.48■■■□□ 2.63
CLN3-258ENST00000637184 SOGA1O94964 1423 aa31.41■■■□□ 2.62
CLN3-258ENST00000637184 FAM9AQ8IZU1 332 aaPredicted RBP31.4■■■□□ 2.62
CLN3-258ENST00000637184 POLA1P09884 1462 aaPredicted RBP31.39■■■□□ 2.62
CLN3-258ENST00000637184 WDR62O43379 1518 aa31.39■■■□□ 2.61
CLN3-258ENST00000637184 THOC2Q8NI27 1593 aaKnown RBP31.37■■■□□ 2.61
CLN3-258ENST00000637184 EEA1Q15075 1411 aa31.33■■■□□ 2.61
CLN3-258ENST00000637184 RUSC2Q8N2Y8 1516 aa31.3■■■□□ 2.6
CLN3-258ENST00000637184 RAD54L2Q9Y4B4 1467 aa31.27■■■□□ 2.6
CLN3-258ENST00000637184 KIF27Q86VH2 1401 aa31.22■■■□□ 2.59
CLN3-258ENST00000637184 CUX2O14529 1486 aa31.21■■■□□ 2.59
CLN3-258ENST00000637184 ABCA10Q8WWZ4 1543 aa31.2■■■□□ 2.59
CLN3-258ENST00000637184 CSRNP3Q8WYN3 585 aa31.17■■■□□ 2.58
CLN3-258ENST00000637184 WDR97A6NE52 1622 aa31.14■■■□□ 2.58
CLN3-258ENST00000637184 TARBP1Q13395 1621 aaKnown RBP31.14■■■□□ 2.58
CLN3-258ENST00000637184 IFT140Q96RY7 1462 aa31.1■■■□□ 2.57
CLN3-258ENST00000637184 LOC105371045A0A1W2PR82 267 aa31.07■■■□□ 2.56
CLN3-258ENST00000637184 TDRD9Q8NDG6 1382 aaKnown RBP31.01■■■□□ 2.56
CLN3-258ENST00000637184 ABCA5Q8WWZ7 1642 aa30.98■■■□□ 2.55
CLN3-258ENST00000637184 GAPVD1Q14C86 1478 aa30.95■■■□□ 2.55
CLN3-258ENST00000637184 IGF1RP08069 1367 aa30.95■■■□□ 2.55
CLN3-258ENST00000637184 EHMT2Q96KQ7 1210 aa30.95■■■□□ 2.55
CLN3-258ENST00000637184 KIF21BO75037 1637 aa30.92■■■□□ 2.54
CLN3-258ENST00000637184 ZNF608Q9ULD9 1512 aaPredicted RBP30.9■■■□□ 2.54
CLN3-258ENST00000637184 AQRO60306 1485 aaKnown RBP eCLIP30.88■■■□□ 2.536e-6■■■■□ 25.1
CLN3-258ENST00000637184 PRXQ9BXM0 1461 aa30.88■■■□□ 2.53
CLN3-258ENST00000637184 GOLGA3Q08378 1498 aa30.86■■■□□ 2.53
CLN3-258ENST00000637184 ERICH3Q5RHP9 1530 aa30.85■■■□□ 2.53
CLN3-258ENST00000637184 EIF4G3O43432 1585 aaKnown RBP30.81■■■□□ 2.52
CLN3-258ENST00000637184 PBRM1Q86U86 1689 aa30.81■■■□□ 2.52
CLN3-258ENST00000637184 CARMIL1Q5VZK9 1371 aa30.81■■■□□ 2.52
CLN3-258ENST00000637184 RAPGEF2Q9Y4G8 1499 aa30.8■■■□□ 2.52
CLN3-258ENST00000637184 CUL7Q14999 1698 aa30.79■■■□□ 2.52
CLN3-258ENST00000637184 GRIN2BQ13224 1484 aa30.78■■■□□ 2.52
CLN3-258ENST00000637184 UBTFP17480 764 aaKnown RBP30.74■■■□□ 2.51
CLN3-258ENST00000637184 TNIKQ9UKE5 1360 aa30.67■■■□□ 2.5
CLN3-258ENST00000637184 FHAD1B1AJZ9 1412 aa30.62■■■□□ 2.49
CLN3-258ENST00000637184 ADAMTS12P58397 1594 aa30.61■■■□□ 2.49
CLN3-258ENST00000637184 SNAPC4Q5SXM2 1469 aa30.6■■■□□ 2.49
CLN3-258ENST00000637184 MAGI1Q96QZ7 1491 aaPredicted RBP30.57■■■□□ 2.48
CLN3-258ENST00000637184 CEP162Q5TB80 1403 aa30.47■■■□□ 2.47
CLN3-258ENST00000637184 SYNJ2O15056 1496 aa30.45■■■□□ 2.47
CLN3-258ENST00000637184 CHMP7Q8WUX9 453 aaPredicted RBP30.41■■■□□ 2.46
CLN3-258ENST00000637184 CTTNBP2Q8WZ74 1663 aa30.39■■■□□ 2.46
CLN3-258ENST00000637184 GRIN2AQ12879 1464 aa30.39■■■□□ 2.46
CLN3-258ENST00000637184 FBLN2P98095 1184 aa30.36■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms